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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHUZ] human gut metagenome; feces
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182281047
OHUZ01000779
[OHUZ] human gut metagenome; feces
103
15
-
Leu
TAA
[ENA]
¢þ
>WENV182281046
OHUZ01000779
[OHUZ] human gut metagenome; feces
198
124
-
Val
TAC
[ENA]
¢þ
>WENV182281048
OHUZ01000987
[OHUZ] human gut metagenome; feces
223
298
+
Ala
TGC
[ENA]
¢þ
>WENV182281040
OHUZ01000255
[OHUZ] human gut metagenome; feces
368
457
+
Ser
GCT
[ENA]
¢þ
>WENV182281043
OHUZ01000361
[OHUZ] human gut metagenome; feces
398
472
+
Thr
TGT
[ENA]
¢þ
>WENV182281045
OHUZ01000421
[OHUZ] human gut metagenome; feces
410
335
-
fMet
CAT
[ENA]
¢þ
>WENV182281041
OHUZ01000255
[OHUZ] human gut metagenome; feces
461
536
+
Lys
CTT
[ENA]
¢þ
>WENV182281044
OHUZ01000361
[OHUZ] human gut metagenome; feces
503
578
+
Pro
TGG
[ENA]
¢þ
>WENV182281042
OHUZ01000255
[OHUZ] human gut metagenome; feces
546
620
+
Glu
CTC
[ENA]
¢þ
>WENV182281039
OHUZ01000043
[OHUZ] human gut metagenome; feces
687
611
-
Ile
GAT
[ENA]
¢þ
>WENV182281038
OHUZ01000043
[OHUZ] human gut metagenome; feces
764
691
-
Ala
TGC
[ENA]
¢þ
>WENV182281035
OHUZ01000012
[OHUZ] human gut metagenome; feces
1665
1739
+
Ile
GAT
[ENA]
¢þ
>WENV182281036
OHUZ01000012
[OHUZ] human gut metagenome; feces
1756
1830
+
Ala
TGC
[ENA]
¢þ
>WENV182281037
OHUZ01000023
[OHUZ] human gut metagenome; feces
2858
2931
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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