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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHVF] human gut metagenome; feces
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182281985
OHVF01000049
[OHVF] human gut metagenome; feces
75
164
+
Ser
GCT
[ENA]
¢þ
>WENV182281996
OHVF01000505
[OHVF] human gut metagenome; feces
83
155
+
Thr
GGT
[ENA]
¢þ
>WENV182282026
OHVF01002507
[OHVF] human gut metagenome; feces
87
11
-
Arg
TCT
[ENA]
¢þ
>WENV182282007
OHVF01001181
[OHVF] human gut metagenome; feces
100
27
-
fMet
CAT
[ENA]
¢þ
>WENV182282005
OHVF01001067
[OHVF] human gut metagenome; feces
141
215
+
Phe
GAA
[ENA]
¢þ
>WENV182282018
OHVF01002046
[OHVF] human gut metagenome; feces
160
89
-
Cys
GCA
[ENA]
¢þ
>WENV182282019
OHVF01002088
[OHVF] human gut metagenome; feces
173
87
-
Leu
CAG
[ENA]
¢þ
>WENV182282022
OHVF01002336
[OHVF] human gut metagenome; feces
212
299
+
Ser
CGA
[ENA]
¢þ
>WENV182282017
OHVF01002046
[OHVF] human gut metagenome; feces
237
166
-
Glu
TTC
[ENA]
¢þ
>WENV182282006
OHVF01001181
[OHVF] human gut metagenome; feces
249
166
-
Tyr
GTA
[ENA]
¢þ
>WENV182282031
OHVF01003310
[OHVF] human gut metagenome; feces
255
336
+
Leu
TAG
[ENA]
¢þ
>WENV182282015
OHVF01001940
[OHVF] human gut metagenome; feces
260
334
+
Met
CAT
[ENA]
¢þ
>WENV182282021
OHVF01002168
[OHVF] human gut metagenome; feces
295
372
+
Pro
TGG
[ENA]
¢þ
>WENV182282032
OHVF01003490
[OHVF] human gut metagenome; feces
311
397
+
Leu
TAA
[ENA]
¢þ
>WENV182282016
OHVF01002046
[OHVF] human gut metagenome; feces
324
253
-
Asn
GTT
[ENA]
¢þ
>WENV182282030
OHVF01003167
[OHVF] human gut metagenome; feces
337
263
-
Glu
CTC
[ENA]
¢þ
>WENV182282010
OHVF01001690
[OHVF] human gut metagenome; feces
341
412
+
Gln
TTG
[ENA]
¢þ
>WENV182282023
OHVF01002336
[OHVF] human gut metagenome; feces
368
458
+
Ser
GCT
[ENA]
¢þ
>WENV182282012
OHVF01001791
[OHVF] human gut metagenome; feces
403
320
-
Tyr
GTA
[ENA]
¢þ
>WENV182282014
OHVF01001864
[OHVF] human gut metagenome; feces
403
327
-
Ile
GAT
[ENA]
¢þ
>WENV182282020
OHVF01002161
[OHVF] human gut metagenome; feces
407
498
+
Ser
GGA
[ENA]
¢þ
>WENV182282024
OHVF01002359
[OHVF] human gut metagenome; feces
410
489
+
His
GTG
[ENA]
¢þ
>WENV182282008
OHVF01001235
[OHVF] human gut metagenome; feces
415
500
+
Leu
AAG
[ENA]
¢þ
>WENV182282028
OHVF01002528
[OHVF] human gut metagenome; feces
463
377
-
Leu
CAG
[ENA]
¢þ
>WENV182282029
OHVF01003167
[OHVF] human gut metagenome; feces
480
405
-
Lys
CTT
[ENA]
¢þ
>WENV182282013
OHVF01001864
[OHVF] human gut metagenome; feces
482
407
-
Ala
TGC
[ENA]
¢þ
>WENV182282027
OHVF01002511
[OHVF] human gut metagenome; feces
484
556
+
Glu
TTC
[ENA]
¢þ
>WENV182281994
OHVF01000461
[OHVF] human gut metagenome; feces
491
566
+
Thr
GGT
[ENA]
¢þ
>WENV182282009
OHVF01001235
[OHVF] human gut metagenome; feces
504
587
+
Leu
CAG
[ENA]
¢þ
>WENV182282011
OHVF01001791
[OHVF] human gut metagenome; feces
522
448
-
Thr
TGT
[ENA]
¢þ
>WENV182281995
OHVF01000493
[OHVF] human gut metagenome; feces
560
485
-
Met
CAT
[ENA]
¢þ
>WENV182282025
OHVF01002501
[OHVF] human gut metagenome; feces
565
489
-
fMet
CAT
[ENA]
¢þ
>WENV182282004
OHVF01000921
[OHVF] human gut metagenome; feces
567
490
-
Val
TAC
[ENA]
¢þ
>WENV182282001
OHVF01000647
[OHVF] human gut metagenome; feces
589
515
-
Ile2
CAT
[ENA]
¢þ
>WENV182281998
OHVF01000534
[OHVF] human gut metagenome; feces
605
529
-
Asn
GTT
[ENA]
¢þ
>WENV182281991
OHVF01000223
[OHVF] human gut metagenome; feces
616
691
+
Lys
CTT
[ENA]
¢þ
>WENV182281992
OHVF01000310
[OHVF] human gut metagenome; feces
661
743
+
Leu
TAG
[ENA]
¢þ
>WENV182282003
OHVF01000921
[OHVF] human gut metagenome; feces
664
590
-
Asn
GTT
[ENA]
¢þ
>WENV182281997
OHVF01000505
[OHVF] human gut metagenome; feces
683
595
-
Ser
GGA
[ENA]
¢þ
>WENV182281999
OHVF01000552
[OHVF] human gut metagenome; feces
690
766
+
Met
CAT
[ENA]
¢þ
>WENV182281990
OHVF01000194
[OHVF] human gut metagenome; feces
724
641
-
Leu
CAG
[ENA]
¢þ
>WENV182282002
OHVF01000902
[OHVF] human gut metagenome; feces
735
660
-
Ala
CGC
[ENA]
¢þ
>WENV182282000
OHVF01000552
[OHVF] human gut metagenome; feces
776
850
+
Glu
TTC
[ENA]
¢þ
>WENV182281989
OHVF01000194
[OHVF] human gut metagenome; feces
844
771
-
Gly
GCC
[ENA]
¢þ
>WENV182281993
OHVF01000351
[OHVF] human gut metagenome; feces
925
850
-
Phe
GAA
[ENA]
¢þ
>WENV182281987
OHVF01000127
[OHVF] human gut metagenome; feces
1429
1505
+
Ala
GGC
[ENA]
¢þ
>WENV182281988
OHVF01000127
[OHVF] human gut metagenome; feces
1509
1585
+
Ile
GAT
[ENA]
¢þ
>WENV182281986
OHVF01000049
[OHVF] human gut metagenome; feces
2112
2188
+
Ile
GAT
[ENA]
¢þ
>WENV182281984
OHVF01000012
[OHVF] human gut metagenome; feces
2148
2074
-
Ala
TGC
[ENA]
¢þ
>WENV182281983
OHVF01000012
[OHVF] human gut metagenome; feces
2239
2165
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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