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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHVQ] human gut metagenome; feces
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182286957
OHVQ01001328
[OHVQ] human gut metagenome; feces
87
163
+
Arg
ACG
[ENA]
¢þ
>WENV182286958
OHVQ01001639
[OHVQ] human gut metagenome; feces
101
176
+
Arg
TCT
[ENA]
¢þ
>WENV182286944
OHVQ01000060
[OHVQ] human gut metagenome; feces
107
31
-
Arg
CCG
[ENA]
¢þ
>WENV182286950
OHVQ01000569
[OHVQ] human gut metagenome; feces
116
45
-
Gly
TCC
[ENA]
¢þ
>WENV182286945
OHVQ01000101
[OHVQ] human gut metagenome; feces
163
88
-
Ala
GGC
[ENA]
¢þ
>WENV182286956
OHVQ01001327
[OHVQ] human gut metagenome; feces
172
258
+
Leu
AAG
[ENA]
¢þ
>WENV182286946
OHVQ01000196
[OHVQ] human gut metagenome; feces
196
272
+
fMet
CAT
[ENA]
¢þ
>WENV182286949
OHVQ01000569
[OHVQ] human gut metagenome; feces
210
135
-
Pro
TGG
[ENA]
¢þ
>WENV182286959
OHVQ01001639
[OHVQ] human gut metagenome; feces
223
297
+
His
GTG
[ENA]
¢þ
>WENV182286962
OHVQ01002238
[OHVQ] human gut metagenome; feces
268
192
-
Ile
GAT
[ENA]
¢þ
>WENV182286953
OHVQ01001039
[OHVQ] human gut metagenome; feces
312
386
+
Val
TAC
[ENA]
¢þ
>WENV182286961
OHVQ01002238
[OHVQ] human gut metagenome; feces
347
272
-
Ala
TGC
[ENA]
¢þ
>WENV182286960
OHVQ01001639
[OHVQ] human gut metagenome; feces
365
436
+
Gln
TTG
[ENA]
¢þ
>WENV182286954
OHVQ01001039
[OHVQ] human gut metagenome; feces
390
475
+
Leu
TAA
[ENA]
¢þ
>WENV182286963
OHVQ01002289
[OHVQ] human gut metagenome; feces
418
499
+
Leu
TAG
[ENA]
¢þ
>WENV182286955
OHVQ01001039
[OHVQ] human gut metagenome; feces
526
601
+
Arg
ACG
[ENA]
¢þ
>WENV182286951
OHVQ01000968
[OHVQ] human gut metagenome; feces
602
516
-
Leu
CAG
[ENA]
¢þ
>WENV182286952
OHVQ01000972
[OHVQ] human gut metagenome; feces
619
693
+
Lys
CTT
[ENA]
¢þ
>WENV182286948
OHVQ01000533
[OHVQ] human gut metagenome; feces
633
550
-
Leu
GAG
[ENA]
¢þ
>WENV182286947
OHVQ01000218
[OHVQ] human gut metagenome; feces
943
1019
+
Ile2
CAT
[ENA]
¢þ
>WENV182286943
OHVQ01000051
[OHVQ] human gut metagenome; feces
1478
1552
+
Ile
GAT
[ENA]
¢þ
>WENV182286942
OHVQ01000002
[OHVQ] human gut metagenome; feces
13281
13205
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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