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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHVR] human gut metagenome; feces
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182286970
OHVR01001342
[OHVR] human gut metagenome; feces
8
84
+
Pro
TGG
[ENA]
¢þ
>WENV182286971
OHVR01001342
[OHVR] human gut metagenome; feces
92
162
+
Gly
TCC
[ENA]
¢þ
>WENV182286966
OHVR01000313
[OHVR] human gut metagenome; feces
178
105
-
Lys
TTT
[ENA]
¢þ
>WENV182286972
OHVR01001342
[OHVR] human gut metagenome; feces
184
258
+
Arg
TCT
[ENA]
¢þ
>WENV182286973
OHVR01001342
[OHVR] human gut metagenome; feces
263
337
+
His
GTG
[ENA]
¢þ
>WENV182286975
OHVR01001527
[OHVR] human gut metagenome; feces
336
407
+
Gln
TTG
[ENA]
¢þ
>WENV182286974
OHVR01001342
[OHVR] human gut metagenome; feces
345
419
+
Gln
TTG
[ENA]
¢þ
>WENV182286967
OHVR01000516
[OHVR] human gut metagenome; feces
430
356
-
Asp
GTC
[ENA]
¢þ
>WENV182286969
OHVR01000671
[OHVR] human gut metagenome; feces
557
465
-
Ser
GCT
[ENA]
¢þ
>WENV182286968
OHVR01000671
[OHVR] human gut metagenome; feces
679
591
-
Ser
TGA
[ENA]
¢þ
>WENV182286964
OHVR01000114
[OHVR] human gut metagenome; feces
1037
961
-
Ile
GAT
[ENA]
¢þ
>WENV182286965
OHVR01000188
[OHVR] human gut metagenome; feces
1072
1147
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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