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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHVV] human gut metagenome; feces
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182289309
OHVV01000241
[OHVV] human gut metagenome; feces
28
101
+
Trp
CCA
[ENA]
¢þ
>WENV182289307
OHVV01000080
[OHVV] human gut metagenome; feces
118
45
-
Pro
CGG
[ENA]
¢þ
>WENV182289324
OHVV01001961
[OHVV] human gut metagenome; feces
127
54
-
Glu
TTC
[ENA]
¢þ
>WENV182289315
OHVV01001112
[OHVV] human gut metagenome; feces
128
200
+
Thr
GGT
[ENA]
¢þ
>WENV182289314
OHVV01001037
[OHVV] human gut metagenome; feces
155
82
-
Thr
CGT
[ENA]
¢þ
>WENV182289323
OHVV01001961
[OHVV] human gut metagenome; feces
204
130
-
Asn
GTT
[ENA]
¢þ
>WENV182289328
OHVV01002746
[OHVV] human gut metagenome; feces
215
290
+
Val
TAC
[ENA]
¢þ
>WENV182289306
OHVV01000080
[OHVV] human gut metagenome; feces
266
341
+
Arg
TCT
[ENA]
¢þ
>WENV182289308
OHVV01000095
[OHVV] human gut metagenome; feces
295
221
-
Glu
CTC
[ENA]
¢þ
>WENV182289327
OHVV01002640
[OHVV] human gut metagenome; feces
305
217
-
Ser
GGA
[ENA]
¢þ
>WENV182289325
OHVV01002283
[OHVV] human gut metagenome; feces
314
239
-
Ala
GGC
[ENA]
¢þ
>WENV182289316
OHVV01001213
[OHVV] human gut metagenome; feces
314
389
+
Ala
CGC
[ENA]
¢þ
>WENV182289326
OHVV01002535
[OHVV] human gut metagenome; feces
365
290
-
Thr
CGT
[ENA]
¢þ
>WENV182289320
OHVV01001823
[OHVV] human gut metagenome; feces
382
456
+
Asn
GTT
[ENA]
¢þ
>WENV182289317
OHVV01001279
[OHVV] human gut metagenome; feces
389
460
+
Gln
TTG
[ENA]
¢þ
>WENV182289310
OHVV01000479
[OHVV] human gut metagenome; feces
429
357
-
Arg
CCT
[ENA]
¢þ
>WENV182289318
OHVV01001324
[OHVV] human gut metagenome; feces
439
524
+
Ser
TGA
[ENA]
¢þ
>WENV182289313
OHVV01000834
[OHVV] human gut metagenome; feces
472
545
+
fMet
CAT
[ENA]
¢þ
>WENV182289322
OHVV01001843
[OHVV] human gut metagenome; feces
482
406
-
Asp
GTC
[ENA]
¢þ
>WENV182289311
OHVV01000607
[OHVV] human gut metagenome; feces
501
583
+
Tyr
GTA
[ENA]
¢þ
>WENV182289321
OHVV01001843
[OHVV] human gut metagenome; feces
562
487
-
Val
TAC
[ENA]
¢þ
>WENV182289319
OHVV01001390
[OHVV] human gut metagenome; feces
593
667
+
Ile2
CAT
[ENA]
¢þ
>WENV182289312
OHVV01000668
[OHVV] human gut metagenome; feces
731
640
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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