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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHXN] human gut metagenome; feces
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182310867
OHXN01000189
[OHXN] human gut metagenome; feces
22
96
+
Val
TAC
[ENA]
¢þ
>WENV182310879
OHXN01000497
[OHXN] human gut metagenome; feces
36
126
+
Ser
GGA
[ENA]
¢þ
>WENV182310880
OHXN01000585
[OHXN] human gut metagenome; feces
66
140
+
Val
TAC
[ENA]
¢þ
>WENV182310868
OHXN01000189
[OHXN] human gut metagenome; feces
104
185
+
Tyr
GTA
[ENA]
¢þ
>WENV182310865
OHXN01000002
[OHXN] human gut metagenome; feces
106
35
-
Cys
GCA
[ENA]
¢þ
>WENV182310881
OHXN01000585
[OHXN] human gut metagenome; feces
149
221
+
Thr
TGT
[ENA]
¢þ
>WENV182310878
OHXN01000313
[OHXN] human gut metagenome; feces
152
227
+
Phe
GAA
[ENA]
¢þ
>WENV182310869
OHXN01000189
[OHXN] human gut metagenome; feces
213
287
+
fMet
CAT
[ENA]
¢þ
>WENV182310864
OHXN01000002
[OHXN] human gut metagenome; feces
217
144
-
Glu
TTC
[ENA]
¢þ
>WENV182310882
OHXN01000585
[OHXN] human gut metagenome; feces
226
300
+
Ile2
CAT
[ENA]
¢þ
>WENV182310870
OHXN01000189
[OHXN] human gut metagenome; feces
291
365
+
Phe
GAA
[ENA]
¢þ
>WENV182310863
OHXN01000002
[OHXN] human gut metagenome; feces
294
220
-
Asn
GTT
[ENA]
¢þ
>WENV182310866
OHXN01000052
[OHXN] human gut metagenome; feces
373
299
-
Ala
TGC
[ENA]
¢þ
>WENV182310883
OHXN01000585
[OHXN] human gut metagenome; feces
403
478
+
Phe
GAA
[ENA]
¢þ
>WENV182310871
OHXN01000189
[OHXN] human gut metagenome; feces
419
489
+
Gly
TCC
[ENA]
¢þ
>WENV182310876
OHXN01000311
[OHXN] human gut metagenome; feces
490
564
+
Asn
GTT
[ENA]
¢þ
>WENV182310872
OHXN01000189
[OHXN] human gut metagenome; feces
511
585
+
Arg
TCT
[ENA]
¢þ
>WENV182310877
OHXN01000311
[OHXN] human gut metagenome; feces
590
662
+
Glu
TTC
[ENA]
¢þ
>WENV182310873
OHXN01000189
[OHXN] human gut metagenome; feces
590
664
+
His
GTG
[ENA]
¢þ
>WENV182310874
OHXN01000189
[OHXN] human gut metagenome; feces
671
745
+
Gln
TTG
[ENA]
¢þ
>WENV182310875
OHXN01000189
[OHXN] human gut metagenome; feces
754
828
+
Lys
TTT
[ENA]
¢þ
>WENV182310862
OHXN01000002
[OHXN] human gut metagenome; feces
3476
3402
-
Ala
TGC
[ENA]
¢þ
>WENV182310861
OHXN01000002
[OHXN] human gut metagenome; feces
3567
3493
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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