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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHYJ] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182320838
OHYJ01000692
[OHYJ] human gut metagenome; feces
58
132
+
Ala
TGC
[ENA]
¢þ
>WENV182320841
OHYJ01000811
[OHYJ] human gut metagenome; feces
133
208
+
Ala
TGC
[ENA]
¢þ
>WENV182320833
OHYJ01000555
[OHYJ] human gut metagenome; feces
150
233
+
Leu
GAG
[ENA]
¢þ
>WENV182320830
OHYJ01000235
[OHYJ] human gut metagenome; feces
193
267
+
Glu
CTC
[ENA]
¢þ
>WENV182320842
OHYJ01000811
[OHYJ] human gut metagenome; feces
244
320
+
Ile
GAT
[ENA]
¢þ
>WENV182320827
OHYJ01000051
[OHYJ] human gut metagenome; feces
267
193
-
Glu
CTC
[ENA]
¢þ
>WENV182320836
OHYJ01000621
[OHYJ] human gut metagenome; feces
302
228
-
Gln
TTG
[ENA]
¢þ
>WENV182320840
OHYJ01000761
[OHYJ] human gut metagenome; feces
326
250
-
Ile
GAT
[ENA]
¢þ
>WENV182320829
OHYJ01000129
[OHYJ] human gut metagenome; feces
343
268
-
Pro
TGG
[ENA]
¢þ
>WENV182320826
OHYJ01000051
[OHYJ] human gut metagenome; feces
386
311
-
Lys
CTT
[ENA]
¢þ
>WENV182320839
OHYJ01000761
[OHYJ] human gut metagenome; feces
405
330
-
Ala
TGC
[ENA]
¢þ
>WENV182320844
OHYJ01000856
[OHYJ] human gut metagenome; feces
412
322
-
Ser
GCT
[ENA]
¢þ
>WENV182320846
OHYJ01000954
[OHYJ] human gut metagenome; feces
413
488
+
Val
TAC
[ENA]
¢þ
>WENV182320835
OHYJ01000621
[OHYJ] human gut metagenome; feces
425
349
-
His
GTG
[ENA]
¢þ
>WENV182320837
OHYJ01000691
[OHYJ] human gut metagenome; feces
457
530
+
Val
TAC
[ENA]
¢þ
>WENV182320845
OHYJ01000925
[OHYJ] human gut metagenome; feces
483
407
-
Val
CAC
[ENA]
¢þ
>WENV182320834
OHYJ01000621
[OHYJ] human gut metagenome; feces
507
432
-
Arg
TCT
[ENA]
¢þ
>WENV182320843
OHYJ01000856
[OHYJ] human gut metagenome; feces
514
427
-
Ser
TGA
[ENA]
¢þ
>WENV182320832
OHYJ01000537
[OHYJ] human gut metagenome; feces
514
439
-
Lys
CTT
[ENA]
¢þ
>WENV182320831
OHYJ01000235
[OHYJ] human gut metagenome; feces
596
671
+
Trp
CCA
[ENA]
¢þ
>WENV182320828
OHYJ01000057
[OHYJ] human gut metagenome; feces
1196
1120
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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