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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHYK] human gut metagenome; feces
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182320865
OHYK01000968
[OHYK] human gut metagenome; feces
40
115
+
Arg
ACG
[ENA]
¢þ
>WENV182320861
OHYK01000851
[OHYK] human gut metagenome; feces
80
151
+
Gln
CTG
[ENA]
¢þ
>WENV182320875
OHYK01001597
[OHYK] human gut metagenome; feces
82
175
+
Ser
GCT
[ENA]
¢þ
>WENV182320866
OHYK01000968
[OHYK] human gut metagenome; feces
122
208
+
Ser
TGA
[ENA]
¢þ
>WENV182320859
OHYK01000545
[OHYK] human gut metagenome; feces
143
72
-
Gln
TTG
[ENA]
¢þ
>WENV182320864
OHYK01000960
[OHYK] human gut metagenome; feces
145
71
-
Thr
TGT
[ENA]
¢þ
>WENV182320862
OHYK01000915
[OHYK] human gut metagenome; feces
190
117
-
fMet
CAT
[ENA]
¢þ
>WENV182320867
OHYK01000968
[OHYK] human gut metagenome; feces
214
285
+
Gln
CTG
[ENA]
¢þ
>WENV182320868
OHYK01000968
[OHYK] human gut metagenome; feces
294
367
+
Phe
GAA
[ENA]
¢þ
>WENV182320869
OHYK01000968
[OHYK] human gut metagenome; feces
376
458
+
Tyr
GTA
[ENA]
¢þ
>WENV182320856
OHYK01000272
[OHYK] human gut metagenome; feces
377
304
-
Lys
CTT
[ENA]
¢þ
>WENV182320870
OHYK01000968
[OHYK] human gut metagenome; feces
465
536
+
Gln
TTG
[ENA]
¢þ
>WENV182320871
OHYK01000968
[OHYK] human gut metagenome; feces
549
620
+
Sup
TCA
[ENA]
¢þ
>WENV182320872
OHYK01000968
[OHYK] human gut metagenome; feces
626
699
+
His
GTG
[ENA]
¢þ
>WENV182320873
OHYK01001041
[OHYK] human gut metagenome; feces
770
854
+
Leu
TAG
[ENA]
¢þ
>WENV182320874
OHYK01001290
[OHYK] human gut metagenome; feces
790
703
-
Leu
TAA
[ENA]
¢þ
>WENV182320854
OHYK01000215
[OHYK] human gut metagenome; feces
997
1069
+
Arg
CCT
[ENA]
¢þ
>WENV182320863
OHYK01000954
[OHYK] human gut metagenome; feces
1054
982
-
Glu
CTC
[ENA]
¢þ
>WENV182320858
OHYK01000394
[OHYK] human gut metagenome; feces
1279
1352
+
Trp
CCA
[ENA]
¢þ
>WENV182320860
OHYK01000708
[OHYK] human gut metagenome; feces
1353
1271
-
Leu
CAA
[ENA]
¢þ
>WENV182320857
OHYK01000315
[OHYK] human gut metagenome; feces
2845
2757
-
Ser
GGA
[ENA]
¢þ
>WENV182320855
OHYK01000222
[OHYK] human gut metagenome; feces
3308
3233
-
Val
TAC
[ENA]
¢þ
>WENV182320852
OHYK01000180
[OHYK] human gut metagenome; feces
3633
3706
+
Lys
TTT
[ENA]
¢þ
>WENV182320853
OHYK01000194
[OHYK] human gut metagenome; feces
4071
3997
-
Pro
TGG
[ENA]
¢þ
>WENV182320851
OHYK01000151
[OHYK] human gut metagenome; feces
4234
4309
+
Arg
TCT
[ENA]
¢þ
>WENV182320850
OHYK01000141
[OHYK] human gut metagenome; feces
4870
4943
+
Phe
GAA
[ENA]
¢þ
>WENV182320847
OHYK01000002
[OHYK] human gut metagenome; feces
5895
5969
+
Ile2
CAT
[ENA]
¢þ
>WENV182320848
OHYK01000033
[OHYK] human gut metagenome; feces
6673
6755
+
Tyr
GTA
[ENA]
¢þ
>WENV182320849
OHYK01000036
[OHYK] human gut metagenome; feces
6843
6768
-
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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