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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHYX] human gut metagenome; feces
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182327472
OHYX01001427
[OHYX] human gut metagenome; feces
132
57
-
Ala
TGC
[ENA]
¢þ
>WENV182327468
OHYX01000914
[OHYX] human gut metagenome; feces
195
121
-
Gln
TTG
[ENA]
¢þ
>WENV182327467
OHYX01000914
[OHYX] human gut metagenome; feces
278
204
-
His
GTG
[ENA]
¢þ
>WENV182327471
OHYX01001427
[OHYX] human gut metagenome; feces
319
245
-
Thr
TGT
[ENA]
¢þ
>WENV182327466
OHYX01000914
[OHYX] human gut metagenome; feces
357
283
-
Arg
TCT
[ENA]
¢þ
>WENV182327470
OHYX01001427
[OHYX] human gut metagenome; feces
418
337
-
Tyr
GTA
[ENA]
¢þ
>WENV182327465
OHYX01000914
[OHYX] human gut metagenome; feces
449
379
-
Gly
TCC
[ENA]
¢þ
>WENV182327469
OHYX01001427
[OHYX] human gut metagenome; feces
500
426
-
Val
TAC
[ENA]
¢þ
>WENV182327464
OHYX01000914
[OHYX] human gut metagenome; feces
554
479
-
Pro
TGG
[ENA]
¢þ
>WENV182327463
OHYX01000783
[OHYX] human gut metagenome; feces
604
529
-
Arg
CCT
[ENA]
¢þ
>WENV182327458
OHYX01000019
[OHYX] human gut metagenome; feces
768
692
-
Ile
GAT
[ENA]
¢þ
>WENV182327457
OHYX01000019
[OHYX] human gut metagenome; feces
865
792
-
Ala
TGC
[ENA]
¢þ
>WENV182327462
OHYX01000182
[OHYX] human gut metagenome; feces
997
1070
+
Lys
TTT
[ENA]
¢þ
>WENV182327461
OHYX01000093
[OHYX] human gut metagenome; feces
1511
1436
-
Val
TAC
[ENA]
¢þ
>WENV182327459
OHYX01000052
[OHYX] human gut metagenome; feces
1741
1815
+
Asn
GTT
[ENA]
¢þ
>WENV182327460
OHYX01000052
[OHYX] human gut metagenome; feces
1818
1891
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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