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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHZN] human gut metagenome; feces
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182334591
OHZN01000111
[OHZN] human gut metagenome; feces
49
125
+
Val
CAC
[ENA]
¢þ
>WENV182334596
OHZN01000413
[OHZN] human gut metagenome; feces
175
100
-
Lys
CTT
[ENA]
¢þ
>WENV182334597
OHZN01000981
[OHZN] human gut metagenome; feces
262
186
-
Arg
CCG
[ENA]
¢þ
>WENV182334593
OHZN01000229
[OHZN] human gut metagenome; feces
317
234
-
Leu
GAG
[ENA]
¢þ
>WENV182334598
OHZN01001003
[OHZN] human gut metagenome; feces
390
464
+
Asp
GTC
[ENA]
¢þ
>WENV182334600
OHZN01001159
[OHZN] human gut metagenome; feces
485
415
-
Gly
TCC
[ENA]
¢þ
>WENV182334592
OHZN01000229
[OHZN] human gut metagenome; feces
506
431
-
Thr
TGT
[ENA]
¢þ
>WENV182334599
OHZN01001063
[OHZN] human gut metagenome; feces
507
421
-
Leu
TAA
[ENA]
¢þ
>WENV182334595
OHZN01000356
[OHZN] human gut metagenome; feces
536
449
-
Ser
CGA
[ENA]
¢þ
>WENV182334594
OHZN01000285
[OHZN] human gut metagenome; feces
542
616
+
Asn
GTT
[ENA]
¢þ
>WENV182334590
OHZN01000053
[OHZN] human gut metagenome; feces
1060
984
-
Ile
GAT
[ENA]
¢þ
>WENV182334589
OHZN01000053
[OHZN] human gut metagenome; feces
1171
1096
-
Ala
TGC
[ENA]
¢þ
>WENV182334587
OHZN01000007
[OHZN] human gut metagenome; feces
2217
2291
+
Ile
GAT
[ENA]
¢þ
>WENV182334588
OHZN01000007
[OHZN] human gut metagenome; feces
2359
2435
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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