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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHZO] human gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182334604
OHZO01000045
[OHZO] human gut metagenome; feces
133
207
+
Ile
GAT
[ENA]
¢þ
>WENV182334612
OHZO01000623
[OHZO] human gut metagenome; feces
190
117
-
Gly
TCC
[ENA]
¢þ
>WENV182334605
OHZO01000045
[OHZO] human gut metagenome; feces
241
316
+
Ala
TGC
[ENA]
¢þ
>WENV182334615
OHZO01000729
[OHZO] human gut metagenome; feces
265
340
+
Thr
GGT
[ENA]
¢þ
>WENV182334619
OHZO01000985
[OHZO] human gut metagenome; feces
285
361
+
Asp
GTC
[ENA]
¢þ
>WENV182334613
OHZO01000661
[OHZO] human gut metagenome; feces
298
222
-
Ala
GGC
[ENA]
¢þ
>WENV182334601
OHZO01000007
[OHZO] human gut metagenome; feces
319
394
+
Ala
TGC
[ENA]
¢þ
>WENV182334614
OHZO01000702
[OHZO] human gut metagenome; feces
321
395
+
Val
GAC
[ENA]
¢þ
>WENV182334616
OHZO01000781
[OHZO] human gut metagenome; feces
360
273
-
Leu
CAG
[ENA]
¢þ
>WENV182334611
OHZO01000396
[OHZO] human gut metagenome; feces
386
313
-
Gly
CCC
[ENA]
¢þ
>WENV182334602
OHZO01000007
[OHZO] human gut metagenome; feces
398
474
+
Ile
GAT
[ENA]
¢þ
>WENV182334618
OHZO01000966
[OHZO] human gut metagenome; feces
465
538
+
Gly
CCC
[ENA]
¢þ
>WENV182334620
OHZO01001061
[OHZO] human gut metagenome; feces
474
403
-
Cys
GCA
[ENA]
¢þ
>WENV182334617
OHZO01000820
[OHZO] human gut metagenome; feces
561
487
-
fMet
CAT
[ENA]
¢þ
>WENV182334608
OHZO01000128
[OHZO] human gut metagenome; feces
614
539
-
fMet
CAT
[ENA]
¢þ
>WENV182334610
OHZO01000134
[OHZO] human gut metagenome; feces
801
725
-
Ile
GAT
[ENA]
¢þ
>WENV182334607
OHZO01000082
[OHZO] human gut metagenome; feces
905
815
-
Ser
GCT
[ENA]
¢þ
>WENV182334609
OHZO01000134
[OHZO] human gut metagenome; feces
911
836
-
Ala
TGC
[ENA]
¢þ
>WENV182334606
OHZO01000082
[OHZO] human gut metagenome; feces
1062
974
-
Ser
TGA
[ENA]
¢þ
>WENV182334603
OHZO01000032
[OHZO] human gut metagenome; feces
1693
1769
+
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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