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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHZP] human gut metagenome; feces
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182334635
OHZP01000342
[OHZP] human gut metagenome; feces
34
105
+
Gly
CCC
[ENA]
¢þ
>WENV182334632
OHZP01000199
[OHZP] human gut metagenome; feces
99
26
-
Phe
GAA
[ENA]
¢þ
>WENV182334648
OHZP01000464
[OHZP] human gut metagenome; feces
171
95
-
Asn
GTT
[ENA]
¢þ
>WENV182334663
OHZP01001122
[OHZP] human gut metagenome; feces
180
255
+
Ile2
CAT
[ENA]
¢þ
>WENV182334666
OHZP01001906
[OHZP] human gut metagenome; feces
237
162
-
Val
GAC
[ENA]
¢þ
>WENV182334624
OHZP01000028
[OHZP] human gut metagenome; feces
281
199
-
Leu
CAA
[ENA]
¢þ
>WENV182334647
OHZP01000464
[OHZP] human gut metagenome; feces
287
213
-
Glu
CTC
[ENA]
¢þ
>WENV182334667
OHZP01002394
[OHZP] human gut metagenome; feces
331
406
+
Trp
CCA
[ENA]
¢þ
>WENV182334657
OHZP01000856
[OHZP] human gut metagenome; feces
396
471
+
Asp
GTC
[ENA]
¢þ
>WENV182334633
OHZP01000267
[OHZP] human gut metagenome; feces
474
390
-
Leu
TAG
[ENA]
¢þ
>WENV182334658
OHZP01000856
[OHZP] human gut metagenome; feces
502
577
+
Val
TAC
[ENA]
¢þ
>WENV182334652
OHZP01000514
[OHZP] human gut metagenome; feces
559
467
-
Ser
GCT
[ENA]
¢þ
>WENV182334659
OHZP01000856
[OHZP] human gut metagenome; feces
583
659
+
Asp
GTC
[ENA]
¢þ
>WENV182334665
OHZP01001392
[OHZP] human gut metagenome; feces
603
531
-
Glu
CTC
[ENA]
¢þ
>WENV182334660
OHZP01000856
[OHZP] human gut metagenome; feces
666
741
+
Phe
GAA
[ENA]
¢þ
>WENV182334651
OHZP01000514
[OHZP] human gut metagenome; feces
679
592
-
Ser
TGA
[ENA]
¢þ
>WENV182334664
OHZP01001287
[OHZP] human gut metagenome; feces
701
614
-
Leu
TAA
[ENA]
¢þ
>WENV182334661
OHZP01000856
[OHZP] human gut metagenome; feces
773
848
+
Gly
GCC
[ENA]
¢þ
>WENV182334662
OHZP01000856
[OHZP] human gut metagenome; feces
878
952
+
Cys
GCA
[ENA]
¢þ
>WENV182334646
OHZP01000460
[OHZP] human gut metagenome; feces
880
807
-
His
GTG
[ENA]
¢þ
>WENV182334645
OHZP01000460
[OHZP] human gut metagenome; feces
957
886
-
Sup
TCA
[ENA]
¢þ
>WENV182334644
OHZP01000460
[OHZP] human gut metagenome; feces
1041
970
-
Gln
TTG
[ENA]
¢þ
>WENV182334656
OHZP01000682
[OHZP] human gut metagenome; feces
1051
1124
+
fMet
CAT
[ENA]
¢þ
>WENV182334643
OHZP01000460
[OHZP] human gut metagenome; feces
1130
1048
-
Tyr
GTA
[ENA]
¢þ
>WENV182334642
OHZP01000460
[OHZP] human gut metagenome; feces
1212
1139
-
Phe
GAA
[ENA]
¢þ
>WENV182334641
OHZP01000460
[OHZP] human gut metagenome; feces
1292
1221
-
Gln
CTG
[ENA]
¢þ
>WENV182334636
OHZP01000374
[OHZP] human gut metagenome; feces
1373
1448
+
His
GTG
[ENA]
¢þ
>WENV182334640
OHZP01000460
[OHZP] human gut metagenome; feces
1384
1298
-
Ser
TGA
[ENA]
¢þ
>WENV182334654
OHZP01000653
[OHZP] human gut metagenome; feces
1427
1501
+
Thr
TGT
[ENA]
¢þ
>WENV182334630
OHZP01000093
[OHZP] human gut metagenome; feces
1436
1362
-
Asp
GTC
[ENA]
¢þ
>WENV182334653
OHZP01000582
[OHZP] human gut metagenome; feces
1441
1366
-
Val
TAC
[ENA]
¢þ
>WENV182334655
OHZP01000661
[OHZP] human gut metagenome; feces
1459
1532
+
Thr
CGT
[ENA]
¢þ
>WENV182334639
OHZP01000460
[OHZP] human gut metagenome; feces
1466
1391
-
Arg
ACG
[ENA]
¢þ
>WENV182334638
OHZP01000460
[OHZP] human gut metagenome; feces
1557
1472
-
Ser
GCT
[ENA]
¢þ
>WENV182334637
OHZP01000452
[OHZP] human gut metagenome; feces
1610
1536
-
Pro
TGG
[ENA]
¢þ
>WENV182334649
OHZP01000502
[OHZP] human gut metagenome; feces
1793
1868
+
Ile
GAT
[ENA]
¢þ
>WENV182334650
OHZP01000502
[OHZP] human gut metagenome; feces
1894
1969
+
Ala
TGC
[ENA]
¢þ
>WENV182334621
OHZP01000015
[OHZP] human gut metagenome; feces
2169
2096
-
Lys
TTT
[ENA]
¢þ
>WENV182334634
OHZP01000294
[OHZP] human gut metagenome; feces
2591
2664
+
Lys
CTT
[ENA]
¢þ
>WENV182334625
OHZP01000046
[OHZP] human gut metagenome; feces
5977
6059
+
Tyr
GTA
[ENA]
¢þ
>WENV182334626
OHZP01000046
[OHZP] human gut metagenome; feces
6159
6231
+
Thr
GGT
[ENA]
¢þ
>WENV182334622
OHZP01000016
[OHZP] human gut metagenome; feces
6474
6545
+
Gln
TTG
[ENA]
¢þ
>WENV182334629
OHZP01000055
[OHZP] human gut metagenome; feces
6635
6709
+
Ile2
CAT
[ENA]
¢þ
>WENV182334631
OHZP01000109
[OHZP] human gut metagenome; feces
7061
6973
-
Ser
GGA
[ENA]
¢þ
>WENV182334627
OHZP01000046
[OHZP] human gut metagenome; feces
7559
7632
+
Trp
CCA
[ENA]
¢þ
>WENV182334628
OHZP01000054
[OHZP] human gut metagenome; feces
9257
9332
+
Arg
TCT
[ENA]
¢þ
>WENV182334623
OHZP01000016
[OHZP] human gut metagenome; feces
13594
13522
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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