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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHZU] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182337003
OHZU01000317
[OHZU] human gut metagenome; feces
69
145
+
Ile
GAT
[ENA]
¢þ
>WENV182337023
OHZU01001412
[OHZU] human gut metagenome; feces
73
149
+
Arg
CCT
[ENA]
¢þ
>WENV182337013
OHZU01000733
[OHZU] human gut metagenome; feces
94
1
-
Ser
GCT
[ENA]
¢þ
>WENV182337015
OHZU01000868
[OHZU] human gut metagenome; feces
118
42
-
Met
CAT
[ENA]
¢þ
>WENV182337021
OHZU01001353
[OHZU] human gut metagenome; feces
143
214
+
Asn
GTT
[ENA]
¢þ
>WENV182337020
OHZU01001034
[OHZU] human gut metagenome; feces
198
124
-
Lys
TTT
[ENA]
¢þ
>WENV182337012
OHZU01000733
[OHZU] human gut metagenome; feces
250
163
-
Ser
TGA
[ENA]
¢þ
>WENV182337008
OHZU01000632
[OHZU] human gut metagenome; feces
274
346
+
Glu
CTC
[ENA]
¢þ
>WENV182337022
OHZU01001403
[OHZU] human gut metagenome; feces
279
365
+
Leu
TAA
[ENA]
¢þ
>WENV182337019
OHZU01001034
[OHZU] human gut metagenome; feces
286
215
-
Gln
TTG
[ENA]
¢þ
>WENV182337025
OHZU01001545
[OHZU] human gut metagenome; feces
309
384
+
Trp
CCA
[ENA]
¢þ
>WENV182337009
OHZU01000635
[OHZU] human gut metagenome; feces
330
405
+
Lys
CTT
[ENA]
¢þ
>WENV182337018
OHZU01001034
[OHZU] human gut metagenome; feces
394
320
-
His
GTG
[ENA]
¢þ
>WENV182337024
OHZU01001457
[OHZU] human gut metagenome; feces
440
352
-
Ser
CGA
[ENA]
¢þ
>WENV182337006
OHZU01000604
[OHZU] human gut metagenome; feces
445
356
-
Ser
GCT
[ENA]
¢þ
>WENV182337010
OHZU01000635
[OHZU] human gut metagenome; feces
452
526
+
Glu
CTC
[ENA]
¢þ
>WENV182337017
OHZU01001034
[OHZU] human gut metagenome; feces
473
399
-
Arg
TCT
[ENA]
¢þ
>WENV182337007
OHZU01000605
[OHZU] human gut metagenome; feces
549
625
+
Arg
CCG
[ENA]
¢þ
>WENV182337016
OHZU01001034
[OHZU] human gut metagenome; feces
564
494
-
Gly
TCC
[ENA]
¢þ
>WENV182337011
OHZU01000635
[OHZU] human gut metagenome; feces
568
644
+
Asn
GTT
[ENA]
¢þ
>WENV182337005
OHZU01000357
[OHZU] human gut metagenome; feces
570
497
-
Gly
TCC
[ENA]
¢þ
>WENV182337014
OHZU01000738
[OHZU] human gut metagenome; feces
588
663
+
Lys
CTT
[ENA]
¢þ
>WENV182337004
OHZU01000357
[OHZU] human gut metagenome; feces
649
574
-
Pro
TGG
[ENA]
¢þ
>WENV182337000
OHZU01000049
[OHZU] human gut metagenome; feces
1186
1111
-
Gly
GCC
[ENA]
¢þ
>WENV182336999
OHZU01000049
[OHZU] human gut metagenome; feces
1269
1194
-
Phe
GAA
[ENA]
¢þ
>WENV182336998
OHZU01000049
[OHZU] human gut metagenome; feces
1352
1276
-
Asp
GTC
[ENA]
¢þ
>WENV182337001
OHZU01000074
[OHZU] human gut metagenome; feces
1432
1507
+
Ala
TGC
[ENA]
¢þ
>WENV182336997
OHZU01000049
[OHZU] human gut metagenome; feces
1433
1358
-
Val
TAC
[ENA]
¢þ
>WENV182337002
OHZU01000074
[OHZU] human gut metagenome; feces
1511
1587
+
Ile
GAT
[ENA]
¢þ
>WENV182336996
OHZU01000049
[OHZU] human gut metagenome; feces
1538
1463
-
Asp
GTC
[ENA]
¢þ
>WENV182336995
OHZU01000049
[OHZU] human gut metagenome; feces
1662
1587
-
Ile2
CAT
[ENA]
¢þ
>WENV182336994
OHZU01000049
[OHZU] human gut metagenome; feces
1738
1666
-
Thr
TGT
[ENA]
¢þ
>WENV182336993
OHZU01000049
[OHZU] human gut metagenome; feces
1859
1786
-
Glu
TTC
[ENA]
¢þ
>WENV182336992
OHZU01000049
[OHZU] human gut metagenome; feces
1944
1870
-
Asn
GTT
[ENA]
¢þ
>WENV182336989
OHZU01000031
[OHZU] human gut metagenome; feces
1956
1883
-
Gly
GCC
[ENA]
¢þ
>WENV182336991
OHZU01000043
[OHZU] human gut metagenome; feces
2142
2068
-
Ala
TGC
[ENA]
¢þ
>WENV182336990
OHZU01000043
[OHZU] human gut metagenome; feces
2233
2159
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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