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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIAR] human gut metagenome; feces
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182345671
OIAR01000769
[OIAR] human gut metagenome; feces
98
24
-
Cys
GCA
[ENA]
¢þ
>WENV182345687
OIAR01001702
[OIAR] human gut metagenome; feces
101
187
+
Leu
CAG
[ENA]
¢þ
>WENV182345689
OIAR01001770
[OIAR] human gut metagenome; feces
115
29
-
Ser
TGA
[ENA]
¢þ
>WENV182345683
OIAR01001532
[OIAR] human gut metagenome; feces
149
75
-
Ala
TGC
[ENA]
¢þ
>WENV182345693
OIAR01002014
[OIAR] human gut metagenome; feces
174
99
-
Lys
TTT
[ENA]
¢þ
>WENV182345695
OIAR01002153
[OIAR] human gut metagenome; feces
189
113
-
Arg
CCG
[ENA]
¢þ
>WENV182345688
OIAR01001770
[OIAR] human gut metagenome; feces
191
120
-
Gly
TCC
[ENA]
¢þ
>WENV182345670
OIAR01000769
[OIAR] human gut metagenome; feces
202
127
-
Gly
GCC
[ENA]
¢þ
>WENV182345694
OIAR01002085
[OIAR] human gut metagenome; feces
216
291
+
Thr
CGT
[ENA]
¢þ
>WENV182345679
OIAR01001189
[OIAR] human gut metagenome; feces
216
292
+
Ile
GAT
[ENA]
¢þ
>WENV182345655
OIAR01000033
[OIAR] human gut metagenome; feces
246
170
-
Asn
GTT
[ENA]
¢þ
>WENV182345682
OIAR01001532
[OIAR] human gut metagenome; feces
247
173
-
Ile
GAT
[ENA]
¢þ
>WENV182345692
OIAR01002014
[OIAR] human gut metagenome; feces
253
179
-
Gln
CTG
[ENA]
¢þ
>WENV182345699
OIAR01002309
[OIAR] human gut metagenome; feces
256
332
+
Met
CAT
[ENA]
¢þ
>WENV182345696
OIAR01002171
[OIAR] human gut metagenome; feces
263
334
+
Gln
TTG
[ENA]
¢þ
>WENV182345685
OIAR01001643
[OIAR] human gut metagenome; feces
295
220
-
Gly
CCC
[ENA]
¢þ
>WENV182345669
OIAR01000769
[OIAR] human gut metagenome; feces
314
239
-
Phe
GAA
[ENA]
¢þ
>WENV182345661
OIAR01000481
[OIAR] human gut metagenome; feces
330
405
+
Arg
TCT
[ENA]
¢þ
>WENV182345691
OIAR01002014
[OIAR] human gut metagenome; feces
331
256
-
Asn
GTT
[ENA]
¢þ
>WENV182345672
OIAR01000851
[OIAR] human gut metagenome; feces
332
419
+
Ser
TGA
[ENA]
¢þ
>WENV182345697
OIAR01002258
[OIAR] human gut metagenome; feces
340
415
+
Val
TAC
[ENA]
¢þ
>WENV182345654
OIAR01000033
[OIAR] human gut metagenome; feces
362
288
-
Glu
CTC
[ENA]
¢þ
>WENV182345680
OIAR01001189
[OIAR] human gut metagenome; feces
362
436
+
Ala
TGC
[ENA]
¢þ
>WENV182345678
OIAR01001170
[OIAR] human gut metagenome; feces
374
301
-
Gln
TTG
[ENA]
¢þ
>WENV182345668
OIAR01000769
[OIAR] human gut metagenome; feces
395
321
-
Asp
GTC
[ENA]
¢þ
>WENV182345662
OIAR01000481
[OIAR] human gut metagenome; feces
412
486
+
His
GTG
[ENA]
¢þ
>WENV182345690
OIAR01001969
[OIAR] human gut metagenome; feces
414
489
+
Ala
GGC
[ENA]
¢þ
>WENV182345698
OIAR01002258
[OIAR] human gut metagenome; feces
420
496
+
Asp
GTC
[ENA]
¢þ
>WENV182345700
OIAR01002309
[OIAR] human gut metagenome; feces
424
495
+
Glu
TTC
[ENA]
¢þ
>WENV182345673
OIAR01000851
[OIAR] human gut metagenome; feces
452
545
+
Ser
GCT
[ENA]
¢þ
>WENV182345675
OIAR01000882
[OIAR] human gut metagenome; feces
473
550
+
Arg
CCT
[ENA]
¢þ
>WENV182345686
OIAR01001648
[OIAR] human gut metagenome; feces
476
393
-
Leu
CAA
[ENA]
¢þ
>WENV182345684
OIAR01001625
[OIAR] human gut metagenome; feces
485
394
-
Ser
GGA
[ENA]
¢þ
>WENV182345660
OIAR01000345
[OIAR] human gut metagenome; feces
487
404
-
Leu
TAG
[ENA]
¢þ
>WENV182345677
OIAR01001170
[OIAR] human gut metagenome; feces
503
428
-
His
GTG
[ENA]
¢þ
>WENV182345681
OIAR01001473
[OIAR] human gut metagenome; feces
611
536
-
Ala
GGC
[ENA]
¢þ
>WENV182345667
OIAR01000769
[OIAR] human gut metagenome; feces
653
578
-
Trp
CCA
[ENA]
¢þ
>WENV182345666
OIAR01000696
[OIAR] human gut metagenome; feces
672
758
+
Leu
CAG
[ENA]
¢þ
>WENV182345676
OIAR01001000
[OIAR] human gut metagenome; feces
773
849
+
Ile2
CAT
[ENA]
¢þ
>WENV182345643
OIAR01000018
[OIAR] human gut metagenome; feces
782
857
+
Ala
CGC
[ENA]
¢þ
>WENV182345663
OIAR01000516
[OIAR] human gut metagenome; feces
875
949
+
Gly
GCC
[ENA]
¢þ
>WENV182345674
OIAR01000858
[OIAR] human gut metagenome; feces
898
823
-
Val
GAC
[ENA]
¢þ
>WENV182345664
OIAR01000516
[OIAR] human gut metagenome; feces
953
1026
+
Cys
GCA
[ENA]
¢þ
>WENV182345665
OIAR01000516
[OIAR] human gut metagenome; feces
1054
1142
+
Leu
TAA
[ENA]
¢þ
>WENV182345657
OIAR01000049
[OIAR] human gut metagenome; feces
1191
1118
-
Gly
TCC
[ENA]
¢þ
>WENV182345656
OIAR01000049
[OIAR] human gut metagenome; feces
1271
1195
-
Pro
CGG
[ENA]
¢þ
>WENV182345651
OIAR01000031
[OIAR] human gut metagenome; feces
1700
1624
-
Met
CAT
[ENA]
¢þ
>WENV182345650
OIAR01000031
[OIAR] human gut metagenome; feces
1777
1702
-
Thr
GGT
[ENA]
¢þ
>WENV182345659
OIAR01000191
[OIAR] human gut metagenome; feces
1857
1931
+
Arg
CCG
[ENA]
¢þ
>WENV182345649
OIAR01000031
[OIAR] human gut metagenome; feces
1880
1805
-
fMet
CAT
[ENA]
¢þ
>WENV182345648
OIAR01000031
[OIAR] human gut metagenome; feces
1969
1885
-
Tyr
GTA
[ENA]
¢þ
>WENV182345647
OIAR01000031
[OIAR] human gut metagenome; feces
2048
1973
-
Thr
TGT
[ENA]
¢þ
>WENV182345658
OIAR01000084
[OIAR] human gut metagenome; feces
2406
2482
+
Arg
ACG
[ENA]
¢þ
>WENV182345646
OIAR01000023
[OIAR] human gut metagenome; feces
2647
2722
+
Glu
CTC
[ENA]
¢þ
>WENV182345653
OIAR01000033
[OIAR] human gut metagenome; feces
3755
3679
-
Ile
GAT
[ENA]
¢þ
>WENV182345652
OIAR01000033
[OIAR] human gut metagenome; feces
3834
3759
-
Ala
TGC
[ENA]
¢þ
>WENV182345645
OIAR01000020
[OIAR] human gut metagenome; feces
4331
4256
-
Ala
TGC
[ENA]
¢þ
>WENV182345644
OIAR01000020
[OIAR] human gut metagenome; feces
4468
4392
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK