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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIAW] human gut metagenome; feces
HIT:
157 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182347258
OIAW01008343
[OIAW] human gut metagenome; feces
29
102
+
Cys
GCA
[ENA]
¢þ
>WENV182347272
OIAW01011459
[OIAW] human gut metagenome; feces
34
110
+
Met
CAT
[ENA]
¢þ
>WENV182347264
OIAW01009140
[OIAW] human gut metagenome; feces
51
126
+
fMet
CAT
[ENA]
¢þ
>WENV182347226
OIAW01003296
[OIAW] human gut metagenome; feces
60
136
+
Ile
GAT
[ENA]
¢þ
>WENV182347210
OIAW01001544
[OIAW] human gut metagenome; feces
68
152
+
Tyr
GTA
[ENA]
¢þ
>WENV182347262
OIAW01008901
[OIAW] human gut metagenome; feces
96
170
+
Ile
GAT
[ENA]
¢þ
>WENV182347274
OIAW01011837
[OIAW] human gut metagenome; feces
121
196
+
Arg
CCT
[ENA]
¢þ
>WENV182347124
OIAW01000006
[OIAW] human gut metagenome; feces
125
200
+
Arg
ACG
[ENA]
¢þ
>WENV182347216
OIAW01001947
[OIAW] human gut metagenome; feces
132
45
-
Ser
TGA
[ENA]
¢þ
>WENV182347249
OIAW01006558
[OIAW] human gut metagenome; feces
151
65
-
Leu
GAG
[ENA]
¢þ
>WENV182347227
OIAW01003296
[OIAW] human gut metagenome; feces
157
232
+
Ala
TGC
[ENA]
¢þ
>WENV182347273
OIAW01011784
[OIAW] human gut metagenome; feces
167
81
-
Leu
GAG
[ENA]
¢þ
>WENV182347237
OIAW01004117
[OIAW] human gut metagenome; feces
167
93
-
Arg
TCT
[ENA]
¢þ
>WENV182347162
OIAW01000063
[OIAW] human gut metagenome; feces
177
101
-
Met
CAT
[ENA]
¢þ
>WENV182347263
OIAW01008901
[OIAW] human gut metagenome; feces
180
254
+
Ala
TGC
[ENA]
¢þ
>WENV182347230
OIAW01003501
[OIAW] human gut metagenome; feces
192
110
-
Tyr
GTA
[ENA]
¢þ
>WENV182347260
OIAW01008626
[OIAW] human gut metagenome; feces
193
107
-
Leu
CAA
[ENA]
¢þ
>WENV182347213
OIAW01001857
[OIAW] human gut metagenome; feces
193
120
-
Cys
GCA
[ENA]
¢þ
>WENV182347206
OIAW01001134
[OIAW] human gut metagenome; feces
194
270
+
Pro
GGG
[ENA]
¢þ
>WENV182347271
OIAW01011445
[OIAW] human gut metagenome; feces
195
120
-
Thr
GGT
[ENA]
¢þ
>WENV182347275
OIAW01011864
[OIAW] human gut metagenome; feces
198
106
-
Ser
GGA
[ENA]
¢þ
>WENV182347244
OIAW01005287
[OIAW] human gut metagenome; feces
199
124
-
fMet
CAT
[ENA]
¢þ
>WENV182347231
OIAW01003515
[OIAW] human gut metagenome; feces
210
135
-
Gly
GCC
[ENA]
¢þ
>WENV182347266
OIAW01009915
[OIAW] human gut metagenome; feces
218
142
-
Asp
GTC
[ENA]
¢þ
>WENV182347248
OIAW01006524
[OIAW] human gut metagenome; feces
244
318
+
Gly
TCC
[ENA]
¢þ
>WENV182347269
OIAW01010351
[OIAW] human gut metagenome; feces
247
320
+
Gln
CTG
[ENA]
¢þ
>WENV182347179
OIAW01000252
[OIAW] human gut metagenome; feces
256
330
+
Gly
TCC
[ENA]
¢þ
>WENV182347256
OIAW01008099
[OIAW] human gut metagenome; feces
258
185
-
Gly
TCC
[ENA]
¢þ
>WENV182347270
OIAW01011445
[OIAW] human gut metagenome; feces
275
199
-
Asp
GTC
[ENA]
¢þ
>WENV182347236
OIAW01004094
[OIAW] human gut metagenome; feces
277
351
+
Trp
CCA
[ENA]
¢þ
>WENV182347228
OIAW01003342
[OIAW] human gut metagenome; feces
284
357
+
Asn
GTT
[ENA]
¢þ
>WENV182347268
OIAW01010136
[OIAW] human gut metagenome; feces
288
213
-
Val
TAC
[ENA]
¢þ
>WENV182347254
OIAW01008001
[OIAW] human gut metagenome; feces
289
377
+
Ser
GGA
[ENA]
¢þ
>WENV182347246
OIAW01005642
[OIAW] human gut metagenome; feces
299
374
+
Thr
GGT
[ENA]
¢þ
>WENV182347215
OIAW01001947
[OIAW] human gut metagenome; feces
301
377
+
Pro
GGG
[ENA]
¢þ
>WENV182347243
OIAW01005287
[OIAW] human gut metagenome; feces
303
218
-
Leu
TAA
[ENA]
¢þ
>WENV182347198
OIAW01000529
[OIAW] human gut metagenome; feces
317
243
-
Gln
CTG
[ENA]
¢þ
>WENV182347142
OIAW01000020
[OIAW] human gut metagenome; feces
329
254
-
Asn
GTT
[ENA]
¢þ
>WENV182347180
OIAW01000252
[OIAW] human gut metagenome; feces
344
420
+
Arg
TCT
[ENA]
¢þ
>WENV182347235
OIAW01004064
[OIAW] human gut metagenome; feces
372
461
+
Leu
GAG
[ENA]
¢þ
>WENV182347173
OIAW01000191
[OIAW] human gut metagenome; feces
387
463
+
Val
TAC
[ENA]
¢þ
>WENV182347161
OIAW01000062
[OIAW] human gut metagenome; feces
397
472
+
Pro
GGG
[ENA]
¢þ
>WENV182347255
OIAW01008099
[OIAW] human gut metagenome; feces
402
475
+
Gly
CCC
[ENA]
¢þ
>WENV182347261
OIAW01008745
[OIAW] human gut metagenome; feces
411
325
-
Leu
CAA
[ENA]
¢þ
>WENV182347259
OIAW01008504
[OIAW] human gut metagenome; feces
428
352
-
Arg
CCT
[ENA]
¢þ
>WENV182347197
OIAW01000529
[OIAW] human gut metagenome; feces
428
355
-
Glu
CTC
[ENA]
¢þ
>WENV182347242
OIAW01004750
[OIAW] human gut metagenome; feces
447
521
+
Gln
CTG
[ENA]
¢þ
>WENV182347181
OIAW01000252
[OIAW] human gut metagenome; feces
464
540
+
His
GTG
[ENA]
¢þ
>WENV182347252
OIAW01007429
[OIAW] human gut metagenome; feces
469
386
-
Leu
GAG
[ENA]
¢þ
>WENV182347174
OIAW01000191
[OIAW] human gut metagenome; feces
471
547
+
Asp
GTC
[ENA]
¢þ
>WENV182347267
OIAW01010136
[OIAW] human gut metagenome; feces
476
402
-
Asn
GTT
[ENA]
¢þ
>WENV182347265
OIAW01009662
[OIAW] human gut metagenome; feces
478
402
-
Arg
CCT
[ENA]
¢þ
>WENV182347211
OIAW01001626
[OIAW] human gut metagenome; feces
479
392
-
Ser
TGA
[ENA]
¢þ
>WENV182347241
OIAW01004748
[OIAW] human gut metagenome; feces
497
421
-
Arg
ACG
[ENA]
¢þ
>WENV182347257
OIAW01008155
[OIAW] human gut metagenome; feces
500
591
+
Ser
TGA
[ENA]
¢þ
>WENV182347253
OIAW01007627
[OIAW] human gut metagenome; feces
503
577
+
His
GTG
[ENA]
¢þ
>WENV182347247
OIAW01006470
[OIAW] human gut metagenome; feces
505
430
-
Arg
CCT
[ENA]
¢þ
>WENV182347204
OIAW01000999
[OIAW] human gut metagenome; feces
527
602
+
Ala
TGC
[ENA]
¢þ
>WENV182347219
OIAW01002284
[OIAW] human gut metagenome; feces
541
453
-
Leu
GAG
[ENA]
¢þ
>WENV182347196
OIAW01000486
[OIAW] human gut metagenome; feces
541
625
+
Leu
TAG
[ENA]
¢þ
>WENV182347175
OIAW01000191
[OIAW] human gut metagenome; feces
551
626
+
Thr
GGT
[ENA]
¢þ
>WENV182347233
OIAW01003747
[OIAW] human gut metagenome; feces
587
662
+
Pro
CGG
[ENA]
¢þ
>WENV182347182
OIAW01000252
[OIAW] human gut metagenome; feces
593
667
+
Gln
TTG
[ENA]
¢þ
>WENV182347229
OIAW01003416
[OIAW] human gut metagenome; feces
617
691
+
Pro
TGG
[ENA]
¢þ
>WENV182347201
OIAW01000899
[OIAW] human gut metagenome; feces
621
703
+
Leu
TAA
[ENA]
¢þ
>WENV182347205
OIAW01000999
[OIAW] human gut metagenome; feces
627
703
+
Ile
GAT
[ENA]
¢þ
>WENV182347222
OIAW01002853
[OIAW] human gut metagenome; feces
628
703
+
Pro
GGG
[ENA]
¢þ
>WENV182347250
OIAW01006704
[OIAW] human gut metagenome; feces
643
719
+
Arg
TCT
[ENA]
¢þ
>WENV182347251
OIAW01006879
[OIAW] human gut metagenome; feces
662
580
-
Leu
TAG
[ENA]
¢þ
>WENV182347245
OIAW01005528
[OIAW] human gut metagenome; feces
666
738
+
Glu
CTC
[ENA]
¢þ
>WENV182347176
OIAW01000191
[OIAW] human gut metagenome; feces
670
745
+
Trp
CCA
[ENA]
¢þ
>WENV182347232
OIAW01003516
[OIAW] human gut metagenome; feces
690
765
+
Pro
TGG
[ENA]
¢þ
>WENV182347214
OIAW01001897
[OIAW] human gut metagenome; feces
693
765
+
Arg
CCT
[ENA]
¢þ
>WENV182347153
OIAW01000042
[OIAW] human gut metagenome; feces
703
617
-
Leu
CAG
[ENA]
¢þ
>WENV182347183
OIAW01000252
[OIAW] human gut metagenome; feces
708
783
+
Lys
TTT
[ENA]
¢þ
>WENV182347208
OIAW01001190
[OIAW] human gut metagenome; feces
714
639
-
Ala
CGC
[ENA]
¢þ
>WENV182347184
OIAW01000263
[OIAW] human gut metagenome; feces
759
683
-
fMet
CAT
[ENA]
¢þ
>WENV182347152
OIAW01000042
[OIAW] human gut metagenome; feces
794
710
-
Tyr
GTA
[ENA]
¢þ
>WENV182347239
OIAW01004362
[OIAW] human gut metagenome; feces
806
879
+
Gln
CTG
[ENA]
¢þ
>WENV182347194
OIAW01000426
[OIAW] human gut metagenome; feces
821
748
-
Ala
GGC
[ENA]
¢þ
>WENV182347240
OIAW01004637
[OIAW] human gut metagenome; feces
827
739
-
Ser
CGA
[ENA]
¢þ
>WENV182347218
OIAW01002192
[OIAW] human gut metagenome; feces
830
755
-
Trp
CCA
[ENA]
¢þ
>WENV182347238
OIAW01004276
[OIAW] human gut metagenome; feces
851
935
+
Leu
CAA
[ENA]
¢þ
>WENV182347221
OIAW01002565
[OIAW] human gut metagenome; feces
854
938
+
Leu
CAA
[ENA]
¢þ
>WENV182347234
OIAW01003991
[OIAW] human gut metagenome; feces
868
783
-
Tyr
GTA
[ENA]
¢þ
>WENV182347167
OIAW01000087
[OIAW] human gut metagenome; feces
876
951
+
Val
GAC
[ENA]
¢þ
>WENV182347193
OIAW01000426
[OIAW] human gut metagenome; feces
895
822
-
Ala
TGC
[ENA]
¢þ
>WENV182347151
OIAW01000042
[OIAW] human gut metagenome; feces
903
828
-
Thr
TGT
[ENA]
¢þ
>WENV182347224
OIAW01003001
[OIAW] human gut metagenome; feces
921
996
+
Asn
GTT
[ENA]
¢þ
>WENV182347225
OIAW01003273
[OIAW] human gut metagenome; feces
933
1006
+
Lys
CTT
[ENA]
¢þ
>WENV182347150
OIAW01000042
[OIAW] human gut metagenome; feces
984
909
-
Phe
GAA
[ENA]
¢þ
>WENV182347192
OIAW01000426
[OIAW] human gut metagenome; feces
1011
937
-
Ile
GAT
[ENA]
¢þ
>WENV182347149
OIAW01000042
[OIAW] human gut metagenome; feces
1066
990
-
Asp
GTC
[ENA]
¢þ
>WENV182347220
OIAW01002324
[OIAW] human gut metagenome; feces
1093
1019
-
Arg
CCG
[ENA]
¢þ
>WENV182347223
OIAW01002858
[OIAW] human gut metagenome; feces
1133
1059
-
Gln
CTG
[ENA]
¢þ
>WENV182347148
OIAW01000042
[OIAW] human gut metagenome; feces
1149
1074
-
Val
TAC
[ENA]
¢þ
>WENV182347217
OIAW01001972
[OIAW] human gut metagenome; feces
1157
1084
-
Gly
CCC
[ENA]
¢þ
>WENV182347212
OIAW01001767
[OIAW] human gut metagenome; feces
1176
1251
+
Glu
TTC
[ENA]
¢þ
>WENV182347209
OIAW01001347
[OIAW] human gut metagenome; feces
1411
1323
-
Ser
GGA
[ENA]
¢þ
>WENV182347166
OIAW01000083
[OIAW] human gut metagenome; feces
1413
1339
-
Glu
CTC
[ENA]
¢þ
>WENV182347165
OIAW01000083
[OIAW] human gut metagenome; feces
1532
1457
-
Lys
CTT
[ENA]
¢þ
>WENV182347172
OIAW01000173
[OIAW] human gut metagenome; feces
1662
1589
-
Gly
TCC
[ENA]
¢þ
>WENV182347195
OIAW01000429
[OIAW] human gut metagenome; feces
1730
1815
+
Ser
TGA
[ENA]
¢þ
>WENV182347207
OIAW01001139
[OIAW] human gut metagenome; feces
1735
1810
+
Gly
GCC
[ENA]
¢þ
>WENV182347191
OIAW01000425
[OIAW] human gut metagenome; feces
1844
1919
+
Thr
CGT
[ENA]
¢þ
>WENV182347203
OIAW01000902
[OIAW] human gut metagenome; feces
1992
1916
-
Ile
GAT
[ENA]
¢þ
>WENV182347202
OIAW01000902
[OIAW] human gut metagenome; feces
2139
2064
-
Ala
TGC
[ENA]
¢þ
>WENV182347200
OIAW01000885
[OIAW] human gut metagenome; feces
2146
2226
+
Leu
TAA
[ENA]
¢þ
>WENV182347178
OIAW01000241
[OIAW] human gut metagenome; feces
2263
2338
+
Lys
TTT
[ENA]
¢þ
>WENV182347199
OIAW01000636
[OIAW] human gut metagenome; feces
2370
2442
+
Glu
TTC
[ENA]
¢þ
>WENV182347187
OIAW01000280
[OIAW] human gut metagenome; feces
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV182347185
OIAW01000268
[OIAW] human gut metagenome; feces
2418
2493
+
Thr
CGT
[ENA]
¢þ
>WENV182347177
OIAW01000239
[OIAW] human gut metagenome; feces
2514
2423
-
Ser
GGA
[ENA]
¢þ
>WENV182347186
OIAW01000268
[OIAW] human gut metagenome; feces
2586
2667
+
Leu
TAG
[ENA]
¢þ
>WENV182347137
OIAW01000012
[OIAW] human gut metagenome; feces
2723
2798
+
Glu
CTC
[ENA]
¢þ
>WENV182347188
OIAW01000335
[OIAW] human gut metagenome; feces
2733
2808
+
Thr
TGT
[ENA]
¢þ
>WENV182347189
OIAW01000335
[OIAW] human gut metagenome; feces
2828
2912
+
Tyr
GTA
[ENA]
¢þ
>WENV182347171
OIAW01000156
[OIAW] human gut metagenome; feces
3059
3145
+
Ser
CGA
[ENA]
¢þ
>WENV182347190
OIAW01000369
[OIAW] human gut metagenome; feces
3648
3724
+
Arg
CCT
[ENA]
¢þ
>WENV182347163
OIAW01000080
[OIAW] human gut metagenome; feces
4582
4500
-
Leu
GAG
[ENA]
¢þ
>WENV182347147
OIAW01000042
[OIAW] human gut metagenome; feces
5175
5250
+
Thr
GGT
[ENA]
¢þ
>WENV182347159
OIAW01000060
[OIAW] human gut metagenome; feces
5887
5963
+
Val
GAC
[ENA]
¢þ
>WENV182347160
OIAW01000060
[OIAW] human gut metagenome; feces
6163
6236
+
Gln
CTG
[ENA]
¢þ
>WENV182347170
OIAW01000132
[OIAW] human gut metagenome; feces
6697
6612
-
Ser
TGA
[ENA]
¢þ
>WENV182347169
OIAW01000129
[OIAW] human gut metagenome; feces
7239
7312
+
Gly
CCC
[ENA]
¢þ
>WENV182347123
OIAW01000005
[OIAW] human gut metagenome; feces
7657
7584
-
Trp
CCA
[ENA]
¢þ
>WENV182347141
OIAW01000017
[OIAW] human gut metagenome; feces
8080
8004
-
Pro
CGG
[ENA]
¢þ
>WENV182347140
OIAW01000017
[OIAW] human gut metagenome; feces
8163
8088
-
Thr
CGT
[ENA]
¢þ
>WENV182347168
OIAW01000102
[OIAW] human gut metagenome; feces
8509
8585
+
Pro
GGG
[ENA]
¢þ
>WENV182347164
OIAW01000083
[OIAW] human gut metagenome; feces
8535
8611
+
Arg
CCG
[ENA]
¢þ
>WENV182347136
OIAW01000010
[OIAW] human gut metagenome; feces
10183
10091
-
Ser
GCT
[ENA]
¢þ
>WENV182347135
OIAW01000010
[OIAW] human gut metagenome; feces
10293
10205
-
Ser
TGA
[ENA]
¢þ
>WENV182347144
OIAW01000035
[OIAW] human gut metagenome; feces
10469
10544
+
Leu
CAA
[ENA]
¢þ
>WENV182347145
OIAW01000035
[OIAW] human gut metagenome; feces
10680
10763
+
Gln
TTG
[ENA]
¢þ
>WENV182347154
OIAW01000050
[OIAW] human gut metagenome; feces
11510
11597
+
Ser
CGA
[ENA]
¢þ
>WENV182347155
OIAW01000056
[OIAW] human gut metagenome; feces
13099
13174
+
Ala
GGC
[ENA]
¢þ
>WENV182347156
OIAW01000057
[OIAW] human gut metagenome; feces
15069
15145
+
Pro
TGG
[ENA]
¢þ
>WENV182347157
OIAW01000057
[OIAW] human gut metagenome; feces
15152
15226
+
Glu
TTC
[ENA]
¢þ
>WENV182347158
OIAW01000057
[OIAW] human gut metagenome; feces
15241
15317
+
Ile2
CAT
[ENA]
¢þ
>WENV182347143
OIAW01000028
[OIAW] human gut metagenome; feces
21065
20989
-
Met
CAT
[ENA]
¢þ
>WENV182347139
OIAW01000015
[OIAW] human gut metagenome; feces
21335
21410
+
Ala
CGC
[ENA]
¢þ
>WENV182347146
OIAW01000035
[OIAW] human gut metagenome; feces
23839
23914
+
Asn
GTT
[ENA]
¢þ
>WENV182347122
OIAW01000002
[OIAW] human gut metagenome; feces
28519
28429
-
Ser
GGA
[ENA]
¢þ
>WENV182347138
OIAW01000014
[OIAW] human gut metagenome; feces
36013
36088
+
Arg
CCT
[ENA]
¢þ
>WENV182347134
OIAW01000009
[OIAW] human gut metagenome; feces
39276
39352
+
Arg
CCG
[ENA]
¢þ
>WENV182347119
OIAW01000001
[OIAW] human gut metagenome; feces
43370
43446
+
Val
CAC
[ENA]
¢þ
>WENV182347125
OIAW01000007
[OIAW] human gut metagenome; feces
51851
51927
+
Ala
GGC
[ENA]
¢þ
>WENV182347133
OIAW01000007
[OIAW] human gut metagenome; feces
56993
56917
-
Lys
CTT
[ENA]
¢þ
>WENV182347132
OIAW01000007
[OIAW] human gut metagenome; feces
57104
57031
-
Gly
TCC
[ENA]
¢þ
>WENV182347131
OIAW01000007
[OIAW] human gut metagenome; feces
57186
57111
-
Gly
GCC
[ENA]
¢þ
>WENV182347130
OIAW01000007
[OIAW] human gut metagenome; feces
57291
57207
-
Leu
TAG
[ENA]
¢þ
>WENV182347129
OIAW01000007
[OIAW] human gut metagenome; feces
57387
57312
-
Lys
TTT
[ENA]
¢þ
>WENV182347128
OIAW01000007
[OIAW] human gut metagenome; feces
57466
57391
-
Gln
TTG
[ENA]
¢þ
>WENV182347127
OIAW01000007
[OIAW] human gut metagenome; feces
57560
57484
-
His
GTG
[ENA]
¢þ
>WENV182347126
OIAW01000007
[OIAW] human gut metagenome; feces
57733
57657
-
Arg
TCT
[ENA]
¢þ
>WENV182347121
OIAW01000002
[OIAW] human gut metagenome; feces
95733
95819
+
Leu
CAA
[ENA]
¢þ
>WENV182347120
OIAW01000001
[OIAW] human gut metagenome; feces
112959
113034
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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