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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIBB] human gut metagenome; feces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182349228
OIBB01000185
[OIBB] human gut metagenome; feces
87
1
-
Leu
CAG
[ENA]
¢þ
>WENV182349233
OIBB01000472
[OIBB] human gut metagenome; feces
124
49
-
Lys
CTT
[ENA]
¢þ
>WENV182349220
OIBB01000112
[OIBB] human gut metagenome; feces
166
241
+
Ala
TGC
[ENA]
¢þ
>WENV182349235
OIBB01000814
[OIBB] human gut metagenome; feces
208
284
+
Ile2
CAT
[ENA]
¢þ
>WENV182349227
OIBB01000185
[OIBB] human gut metagenome; feces
228
154
-
Lys
TTT
[ENA]
¢þ
>WENV182349230
OIBB01000270
[OIBB] human gut metagenome; feces
299
375
+
Pro
GGG
[ENA]
¢þ
>WENV182349226
OIBB01000185
[OIBB] human gut metagenome; feces
316
245
-
Gln
TTG
[ENA]
¢þ
>WENV182349234
OIBB01000659
[OIBB] human gut metagenome; feces
331
255
-
fMet
CAT
[ENA]
¢þ
>WENV182349231
OIBB01000418
[OIBB] human gut metagenome; feces
401
327
-
Arg
CCG
[ENA]
¢þ
>WENV182349232
OIBB01000435
[OIBB] human gut metagenome; feces
406
326
-
Leu
TAG
[ENA]
¢þ
>WENV182349225
OIBB01000185
[OIBB] human gut metagenome; feces
458
384
-
His
GTG
[ENA]
¢þ
>WENV182349229
OIBB01000245
[OIBB] human gut metagenome; feces
479
393
-
Leu
AAG
[ENA]
¢þ
>WENV182349224
OIBB01000185
[OIBB] human gut metagenome; feces
548
473
-
Arg
TCT
[ENA]
¢þ
>WENV182349223
OIBB01000185
[OIBB] human gut metagenome; feces
639
569
-
Gly
TCC
[ENA]
¢þ
>WENV182349222
OIBB01000185
[OIBB] human gut metagenome; feces
733
658
-
Pro
TGG
[ENA]
¢þ
>WENV182349221
OIBB01000168
[OIBB] human gut metagenome; feces
828
753
-
Ala
TGC
[ENA]
¢þ
>WENV182349219
OIBB01000014
[OIBB] human gut metagenome; feces
1771
1696
-
Gly
GCC
[ENA]
¢þ
>WENV182349218
OIBB01000014
[OIBB] human gut metagenome; feces
1854
1779
-
Phe
GAA
[ENA]
¢þ
>WENV182349217
OIBB01000014
[OIBB] human gut metagenome; feces
1937
1861
-
Asp
GTC
[ENA]
¢þ
>WENV182349216
OIBB01000014
[OIBB] human gut metagenome; feces
2018
1943
-
Val
TAC
[ENA]
¢þ
>WENV182349215
OIBB01000014
[OIBB] human gut metagenome; feces
2128
2053
-
Asp
GTC
[ENA]
¢þ
>WENV182349214
OIBB01000014
[OIBB] human gut metagenome; feces
2218
2143
-
Ile2
CAT
[ENA]
¢þ
>WENV182349213
OIBB01000014
[OIBB] human gut metagenome; feces
2299
2227
-
Thr
TGT
[ENA]
¢þ
>WENV182349212
OIBB01000014
[OIBB] human gut metagenome; feces
2406
2334
-
Glu
TTC
[ENA]
¢þ
>WENV182349211
OIBB01000014
[OIBB] human gut metagenome; feces
2498
2424
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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