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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIBH] human gut metagenome; feces
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182351462
OIBH01000493
[OIBH] human gut metagenome; feces
48
136
+
Ser
GGA
[ENA]
¢þ
>WENV182351465
OIBH01000642
[OIBH] human gut metagenome; feces
83
159
+
Ile
GAT
[ENA]
¢þ
>WENV182351480
OIBH01001644
[OIBH] human gut metagenome; feces
128
58
-
Gly
TCC
[ENA]
¢þ
>WENV182351483
OIBH01002142
[OIBH] human gut metagenome; feces
131
58
-
Trp
CCA
[ENA]
¢þ
>WENV182351469
OIBH01000932
[OIBH] human gut metagenome; feces
144
219
+
Phe
GAA
[ENA]
¢þ
>WENV182351481
OIBH01001865
[OIBH] human gut metagenome; feces
148
223
+
Val
GAC
[ENA]
¢þ
>WENV182351477
OIBH01001392
[OIBH] human gut metagenome; feces
157
239
+
Leu
CAG
[ENA]
¢þ
>WENV182351474
OIBH01001306
[OIBH] human gut metagenome; feces
174
249
+
Ala
TGC
[ENA]
¢þ
>WENV182351479
OIBH01001644
[OIBH] human gut metagenome; feces
209
134
-
Pro
TGG
[ENA]
¢þ
>WENV182351476
OIBH01001343
[OIBH] human gut metagenome; feces
228
300
+
Gly
CCC
[ENA]
¢þ
>WENV182351472
OIBH01001223
[OIBH] human gut metagenome; feces
246
171
-
Asn
GTT
[ENA]
¢þ
>WENV182351458
OIBH01000196
[OIBH] human gut metagenome; feces
248
336
+
Ser
TGA
[ENA]
¢þ
>WENV182351475
OIBH01001306
[OIBH] human gut metagenome; feces
253
329
+
Ile
GAT
[ENA]
¢þ
>WENV182351478
OIBH01001392
[OIBH] human gut metagenome; feces
254
327
+
Gly
GCC
[ENA]
¢þ
>WENV182351467
OIBH01000694
[OIBH] human gut metagenome; feces
298
372
+
Met
CAT
[ENA]
¢þ
>WENV182351461
OIBH01000318
[OIBH] human gut metagenome; feces
332
405
+
fMet
CAT
[ENA]
¢þ
>WENV182351455
OIBH01000030
[OIBH] human gut metagenome; feces
348
422
+
Ile
GAT
[ENA]
¢þ
>WENV182351459
OIBH01000196
[OIBH] human gut metagenome; feces
405
495
+
Ser
GCT
[ENA]
¢þ
>WENV182351460
OIBH01000244
[OIBH] human gut metagenome; feces
407
493
+
Leu
TAA
[ENA]
¢þ
>WENV182351468
OIBH01000716
[OIBH] human gut metagenome; feces
416
488
+
Arg
CCT
[ENA]
¢þ
>WENV182351453
OIBH01000012
[OIBH] human gut metagenome; feces
420
345
-
Lys
CTT
[ENA]
¢þ
>WENV182351473
OIBH01001245
[OIBH] human gut metagenome; feces
437
363
-
Ile2
CAT
[ENA]
¢þ
>WENV182351482
OIBH01002142
[OIBH] human gut metagenome; feces
439
349
-
Ser
TGA
[ENA]
¢þ
>WENV182351456
OIBH01000030
[OIBH] human gut metagenome; feces
439
513
+
Ala
TGC
[ENA]
¢þ
>WENV182351470
OIBH01001059
[OIBH] human gut metagenome; feces
486
561
+
Thr
GGT
[ENA]
¢þ
>WENV182351457
OIBH01000141
[OIBH] human gut metagenome; feces
586
510
-
Arg
CCT
[ENA]
¢þ
>WENV182351471
OIBH01001059
[OIBH] human gut metagenome; feces
605
680
+
Trp
CCA
[ENA]
¢þ
>WENV182351463
OIBH01000543
[OIBH] human gut metagenome; feces
683
757
+
Asn
GTT
[ENA]
¢þ
>WENV182351466
OIBH01000674
[OIBH] human gut metagenome; feces
738
656
-
Leu
TAG
[ENA]
¢þ
>WENV182351464
OIBH01000543
[OIBH] human gut metagenome; feces
780
857
+
Val
TAC
[ENA]
¢þ
>WENV182351454
OIBH01000021
[OIBH] human gut metagenome; feces
2264
2337
+
Ala
TGC
[ENA]
¢þ
>WENV182351452
OIBH01000012
[OIBH] human gut metagenome; feces
3859
3784
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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