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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OIBJ] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182352284
OIBJ01000830
[OIBJ] human gut metagenome; feces
63
139
+
Ile
GAT
[ENA]
¢þ
>WENV182352285
OIBJ01000960
[OIBJ] human gut metagenome; feces
80
150
+
Gly
TCC
[ENA]
¢þ
>WENV182352275
OIBJ01000151
[OIBJ] human gut metagenome; feces
90
166
+
Arg
ACG
[ENA]
¢þ
>WENV182352271
OIBJ01000061
[OIBJ] human gut metagenome; feces
120
194
+
Ile
GAT
[ENA]
¢þ
>WENV182352286
OIBJ01000960
[OIBJ] human gut metagenome; feces
153
228
+
Arg
TCT
[ENA]
¢þ
>WENV182352282
OIBJ01000578
[OIBJ] human gut metagenome; feces
168
83
-
Leu
CAA
[ENA]
¢þ
>WENV182352272
OIBJ01000061
[OIBJ] human gut metagenome; feces
218
292
+
Ala
TGC
[ENA]
¢þ
>WENV182352287
OIBJ01000960
[OIBJ] human gut metagenome; feces
236
310
+
His
GTG
[ENA]
¢þ
>WENV182352288
OIBJ01000960
[OIBJ] human gut metagenome; feces
336
408
+
Gln
TTG
[ENA]
¢þ
>WENV182352278
OIBJ01000428
[OIBJ] human gut metagenome; feces
361
287
-
Glu
TTC
[ENA]
¢þ
>WENV182352283
OIBJ01000808
[OIBJ] human gut metagenome; feces
364
289
-
Asn
GTT
[ENA]
¢þ
>WENV182352274
OIBJ01000064
[OIBJ] human gut metagenome; feces
382
307
-
Pro
TGG
[ENA]
¢þ
>WENV182352281
OIBJ01000577
[OIBJ] human gut metagenome; feces
395
302
-
Ser
GCT
[ENA]
¢þ
>WENV182352273
OIBJ01000064
[OIBJ] human gut metagenome; feces
490
417
-
Trp
CCA
[ENA]
¢þ
>WENV182352280
OIBJ01000577
[OIBJ] human gut metagenome; feces
517
429
-
Ser
TGA
[ENA]
¢þ
>WENV182352276
OIBJ01000399
[OIBJ] human gut metagenome; feces
527
452
-
Trp
CCA
[ENA]
¢þ
>WENV182352277
OIBJ01000428
[OIBJ] human gut metagenome; feces
529
453
-
Met
CAT
[ENA]
¢þ
>WENV182352279
OIBJ01000527
[OIBJ] human gut metagenome; feces
615
524
-
Ser
CGA
[ENA]
¢þ
>WENV182352270
OIBJ01000031
[OIBJ] human gut metagenome; feces
635
710
+
Glu
TTC
[ENA]
¢þ
>WENV182352269
OIBJ01000011
[OIBJ] human gut metagenome; feces
2963
3038
+
Lys
CTT
[ENA]
¢þ
>WENV182352268
OIBJ01000001
[OIBJ] human gut metagenome; feces
20453
20377
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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