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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OICW] human gut metagenome; feces
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182372460
OICW01001553
[OICW] human gut metagenome; feces
55
130
+
Thr
GGT
[ENA]
¢þ
>WENV182372465
OICW01002100
[OICW] human gut metagenome; feces
85
1
-
Leu
TAG
[ENA]
¢þ
>WENV182372464
OICW01001871
[OICW] human gut metagenome; feces
108
34
-
Gly
GCC
[ENA]
¢þ
>WENV182372445
OICW01000170
[OICW] human gut metagenome; feces
171
246
+
Ala
TGC
[ENA]
¢þ
>WENV182372461
OICW01001687
[OICW] human gut metagenome; feces
190
114
-
fMet
CAT
[ENA]
¢þ
>WENV182372462
OICW01001771
[OICW] human gut metagenome; feces
237
165
-
Glu
CTC
[ENA]
¢þ
>WENV182372456
OICW01000929
[OICW] human gut metagenome; feces
247
173
-
Gln
TTG
[ENA]
¢þ
>WENV182372446
OICW01000170
[OICW] human gut metagenome; feces
250
326
+
Ile
GAT
[ENA]
¢þ
>WENV182372447
OICW01000186
[OICW] human gut metagenome; feces
268
340
+
Ala
TGC
[ENA]
¢þ
>WENV182372449
OICW01000385
[OICW] human gut metagenome; feces
271
345
+
Glu
TTC
[ENA]
¢þ
>WENV182372448
OICW01000278
[OICW] human gut metagenome; feces
337
411
+
Asn
GTT
[ENA]
¢þ
>WENV182372457
OICW01001004
[OICW] human gut metagenome; feces
350
434
+
Leu
CAA
[ENA]
¢þ
>WENV182372444
OICW01000077
[OICW] human gut metagenome; feces
360
284
-
Ile
GAT
[ENA]
¢þ
>WENV182372458
OICW01001244
[OICW] human gut metagenome; feces
367
284
-
Leu
GAG
[ENA]
¢þ
>WENV182372455
OICW01000929
[OICW] human gut metagenome; feces
370
291
-
His
GTG
[ENA]
¢þ
>WENV182372450
OICW01000385
[OICW] human gut metagenome; feces
377
453
+
Val
CAC
[ENA]
¢þ
>WENV182372459
OICW01001395
[OICW] human gut metagenome; feces
407
331
-
Ile
GAT
[ENA]
¢þ
>WENV182372463
OICW01001834
[OICW] human gut metagenome; feces
415
340
-
Asn
GTT
[ENA]
¢þ
>WENV182372443
OICW01000077
[OICW] human gut metagenome; feces
449
374
-
Ala
TGC
[ENA]
¢þ
>WENV182372454
OICW01000929
[OICW] human gut metagenome; feces
449
375
-
Arg
TCT
[ENA]
¢þ
>WENV182372436
OICW01000013
[OICW] human gut metagenome; feces
463
388
-
Lys
CTT
[ENA]
¢þ
>WENV182372453
OICW01000929
[OICW] human gut metagenome; feces
524
454
-
Gly
TCC
[ENA]
¢þ
>WENV182372451
OICW01000714
[OICW] human gut metagenome; feces
597
673
+
Asp
GTC
[ENA]
¢þ
>WENV182372452
OICW01000929
[OICW] human gut metagenome; feces
605
530
-
Pro
TGG
[ENA]
¢þ
>WENV182372441
OICW01000035
[OICW] human gut metagenome; feces
1413
1323
-
Ser
GCT
[ENA]
¢þ
>WENV182372440
OICW01000035
[OICW] human gut metagenome; feces
1514
1427
-
Ser
TGA
[ENA]
¢þ
>WENV182372439
OICW01000035
[OICW] human gut metagenome; feces
1680
1756
+
Arg
ACG
[ENA]
¢þ
>WENV182372442
OICW01000042
[OICW] human gut metagenome; feces
1702
1627
-
Val
TAC
[ENA]
¢þ
>WENV182372437
OICW01000021
[OICW] human gut metagenome; feces
1994
2071
+
Ile
GAT
[ENA]
¢þ
>WENV182372438
OICW01000021
[OICW] human gut metagenome; feces
2152
2228
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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