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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OICX] human gut metagenome; feces
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182372469
OICX01000417
[OICX] human gut metagenome; feces
122
197
+
Val
TAC
[ENA]
¢þ
>WENV182372473
OICX01000900
[OICX] human gut metagenome; feces
166
241
+
Arg
ACG
[ENA]
¢þ
>WENV182372474
OICX01000905
[OICX] human gut metagenome; feces
199
289
+
Ser
GGA
[ENA]
¢þ
>WENV182372470
OICX01000417
[OICX] human gut metagenome; feces
205
281
+
Asp
GTC
[ENA]
¢þ
>WENV182372476
OICX01001018
[OICX] human gut metagenome; feces
223
298
+
Asn
GTT
[ENA]
¢þ
>WENV182372468
OICX01000377
[OICX] human gut metagenome; feces
274
349
+
fMet
CAT
[ENA]
¢þ
>WENV182372471
OICX01000417
[OICX] human gut metagenome; feces
285
360
+
Phe
GAA
[ENA]
¢þ
>WENV182372477
OICX01001136
[OICX] human gut metagenome; feces
291
209
-
Leu
GAG
[ENA]
¢þ
>WENV182372475
OICX01000906
[OICX] human gut metagenome; feces
385
461
+
Val
GAC
[ENA]
¢þ
>WENV182372472
OICX01000417
[OICX] human gut metagenome; feces
387
462
+
Gly
GCC
[ENA]
¢þ
>WENV182372467
OICX01000100
[OICX] human gut metagenome; feces
955
879
-
Ile
GAT
[ENA]
¢þ
>WENV182372466
OICX01000100
[OICX] human gut metagenome; feces
1102
1027
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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