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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OIDO] human gut metagenome; feces
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182380260
OIDO01002497
[OIDO] human gut metagenome; feces
46
122
+
Ile
GAT
[ENA]
¢þ
>WENV182380248
OIDO01001191
[OIDO] human gut metagenome; feces
88
162
+
Asn
GTT
[ENA]
¢þ
>WENV182380266
OIDO01002839
[OIDO] human gut metagenome; feces
117
191
+
Thr
TGT
[ENA]
¢þ
>WENV182380236
OIDO01000041
[OIDO] human gut metagenome; feces
178
107
-
Cys
GCA
[ENA]
¢þ
>WENV182380244
OIDO01000892
[OIDO] human gut metagenome; feces
186
112
-
Glu
TTC
[ENA]
¢þ
>WENV182380252
OIDO01001565
[OIDO] human gut metagenome; feces
205
134
-
Trp
CCA
[ENA]
¢þ
>WENV182380250
OIDO01001530
[OIDO] human gut metagenome; feces
212
138
-
Asp
GTC
[ENA]
¢þ
>WENV182380261
OIDO01002497
[OIDO] human gut metagenome; feces
233
308
+
Lys
CTT
[ENA]
¢þ
>WENV182380240
OIDO01000689
[OIDO] human gut metagenome; feces
260
184
-
Ile2
CAT
[ENA]
¢þ
>WENV182380237
OIDO01000053
[OIDO] human gut metagenome; feces
286
211
-
Lys
CTT
[ENA]
¢þ
>WENV182380247
OIDO01001086
[OIDO] human gut metagenome; feces
292
364
+
Glu
TTC
[ENA]
¢þ
>WENV182380235
OIDO01000041
[OIDO] human gut metagenome; feces
299
224
-
Gly
GCC
[ENA]
¢þ
>WENV182380256
OIDO01001926
[OIDO] human gut metagenome; feces
324
248
-
Ile
GAT
[ENA]
¢þ
>WENV182380265
OIDO01002789
[OIDO] human gut metagenome; feces
354
279
-
Thr
GGT
[ENA]
¢þ
>WENV182380262
OIDO01002497
[OIDO] human gut metagenome; feces
355
429
+
Glu
CTC
[ENA]
¢þ
>WENV182380258
OIDO01001976
[OIDO] human gut metagenome; feces
365
290
-
His
GTG
[ENA]
¢þ
>WENV182380267
OIDO01002932
[OIDO] human gut metagenome; feces
382
308
-
Met
CAT
[ENA]
¢þ
>WENV182380268
OIDO01003051
[OIDO] human gut metagenome; feces
385
461
+
Arg
CCG
[ENA]
¢þ
>WENV182380255
OIDO01001926
[OIDO] human gut metagenome; feces
403
328
-
Ala
TGC
[ENA]
¢þ
>WENV182380254
OIDO01001573
[OIDO] human gut metagenome; feces
420
347
-
Gly
CCC
[ENA]
¢þ
>WENV182380264
OIDO01002789
[OIDO] human gut metagenome; feces
434
358
-
Asp
GTC
[ENA]
¢þ
>WENV182380259
OIDO01002112
[OIDO] human gut metagenome; feces
440
515
+
Lys
TTT
[ENA]
¢þ
>WENV182380243
OIDO01000892
[OIDO] human gut metagenome; feces
444
367
-
Val
TAC
[ENA]
¢þ
>WENV182380257
OIDO01001976
[OIDO] human gut metagenome; feces
445
372
-
Arg
TCT
[ENA]
¢þ
>WENV182380251
OIDO01001543
[OIDO] human gut metagenome; feces
466
542
+
Ala
GGC
[ENA]
¢þ
>WENV182380245
OIDO01000934
[OIDO] human gut metagenome; feces
508
423
-
Ser
TGA
[ENA]
¢þ
>WENV182380263
OIDO01002789
[OIDO] human gut metagenome; feces
513
438
-
Val
TAC
[ENA]
¢þ
>WENV182380253
OIDO01001573
[OIDO] human gut metagenome; feces
518
446
-
Pro
TGG
[ENA]
¢þ
>WENV182380239
OIDO01000571
[OIDO] human gut metagenome; feces
551
476
-
Pro
CGG
[ENA]
¢þ
>WENV182380249
OIDO01001290
[OIDO] human gut metagenome; feces
562
651
+
Ser
CGA
[ENA]
¢þ
>WENV182380242
OIDO01000892
[OIDO] human gut metagenome; feces
579
504
-
Asp
GTC
[ENA]
¢þ
>WENV182380238
OIDO01000375
[OIDO] human gut metagenome; feces
588
511
-
Val
TAC
[ENA]
¢þ
>WENV182380246
OIDO01000940
[OIDO] human gut metagenome; feces
634
552
-
Leu
TAG
[ENA]
¢þ
>WENV182380241
OIDO01000809
[OIDO] human gut metagenome; feces
718
806
+
Ser
GGA
[ENA]
¢þ
>WENV182380233
OIDO01000013
[OIDO] human gut metagenome; feces
2562
2636
+
Ile
GAT
[ENA]
¢þ
>WENV182380234
OIDO01000013
[OIDO] human gut metagenome; feces
2653
2727
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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