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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OIFC] human gut metagenome; stool
HIT:
126 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182407339
OIFC01000984
[OIFC] human gut metagenome; stool
3
74
+
Trp
CCA
[ENA]
¢þ
>WENV182407314
OIFC01000442
[OIFC] human gut metagenome; stool
3
76
+
Pro
TGG
[ENA]
¢þ
>WENV182407340
OIFC01001051
[OIFC] human gut metagenome; stool
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV182407254
OIFC01000013
[OIFC] human gut metagenome; stool
76
1
-
Arg
ACG
[ENA]
¢þ
>WENV182407241
OIFC01000005
[OIFC] human gut metagenome; stool
77
2
-
Val
TAC
[ENA]
¢þ
>WENV182407259
OIFC01000017
[OIFC] human gut metagenome; stool
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV182407343
OIFC01001474
[OIFC] human gut metagenome; stool
116
192
+
Arg
ACG
[ENA]
¢þ
>WENV182407240
OIFC01000005
[OIFC] human gut metagenome; stool
188
113
-
Lys
TTT
[ENA]
¢þ
>WENV182407253
OIFC01000013
[OIFC] human gut metagenome; stool
215
139
-
Arg
ACG
[ENA]
¢þ
>WENV182407344
OIFC01002001
[OIFC] human gut metagenome; stool
248
159
-
Ser
CGA
[ENA]
¢þ
>WENV182407346
OIFC01002394
[OIFC] human gut metagenome; stool
266
191
-
Ala
TGC
[ENA]
¢þ
>WENV182407252
OIFC01000013
[OIFC] human gut metagenome; stool
311
219
-
Ser
GCT
[ENA]
¢þ
>WENV182407342
OIFC01001368
[OIFC] human gut metagenome; stool
317
392
+
Arg
CCT
[ENA]
¢þ
>WENV182407336
OIFC01000729
[OIFC] human gut metagenome; stool
375
451
+
Asp
GTC
[ENA]
¢þ
>WENV182407345
OIFC01002394
[OIFC] human gut metagenome; stool
385
309
-
Ile
GAT
[ENA]
¢þ
>WENV182407337
OIFC01000729
[OIFC] human gut metagenome; stool
467
542
+
Trp
CCA
[ENA]
¢þ
>WENV182407313
OIFC01000394
[OIFC] human gut metagenome; stool
478
402
-
Val
GAC
[ENA]
¢þ
>WENV182407335
OIFC01000602
[OIFC] human gut metagenome; stool
749
676
-
Glu
TTC
[ENA]
¢þ
>WENV182407299
OIFC01000119
[OIFC] human gut metagenome; stool
774
859
+
Leu
CAA
[ENA]
¢þ
>WENV182407334
OIFC01000602
[OIFC] human gut metagenome; stool
852
763
-
Ser
GCT
[ENA]
¢þ
>WENV182407324
OIFC01000576
[OIFC] human gut metagenome; stool
931
1020
+
Ser
TGA
[ENA]
¢þ
>WENV182407333
OIFC01000602
[OIFC] human gut metagenome; stool
936
861
-
Ile
GAT
[ENA]
¢þ
>WENV182407302
OIFC01000163
[OIFC] human gut metagenome; stool
940
851
-
Ser
GGA
[ENA]
¢þ
>WENV182407341
OIFC01001168
[OIFC] human gut metagenome; stool
979
1054
+
Thr
TGT
[ENA]
¢þ
>WENV182407332
OIFC01000602
[OIFC] human gut metagenome; stool
1015
945
-
Gly
TCC
[ENA]
¢þ
>WENV182407331
OIFC01000602
[OIFC] human gut metagenome; stool
1093
1017
-
Asp
GTC
[ENA]
¢þ
>WENV182407311
OIFC01000294
[OIFC] human gut metagenome; stool
1204
1129
-
Asn
GTT
[ENA]
¢þ
>WENV182407330
OIFC01000602
[OIFC] human gut metagenome; stool
1216
1141
-
fMet
CAT
[ENA]
¢þ
>WENV182407323
OIFC01000507
[OIFC] human gut metagenome; stool
1262
1177
-
Leu
CAA
[ENA]
¢þ
>WENV182407338
OIFC01000828
[OIFC] human gut metagenome; stool
1296
1370
+
Gly
GCC
[ENA]
¢þ
>WENV182407329
OIFC01000602
[OIFC] human gut metagenome; stool
1338
1249
-
Ser
TGA
[ENA]
¢þ
>WENV182407322
OIFC01000507
[OIFC] human gut metagenome; stool
1345
1275
-
Cys
GCA
[ENA]
¢þ
>WENV182407321
OIFC01000507
[OIFC] human gut metagenome; stool
1443
1370
-
Gln
TTG
[ENA]
¢þ
>WENV182407328
OIFC01000602
[OIFC] human gut metagenome; stool
1446
1371
-
Ile2
CAT
[ENA]
¢þ
>WENV182407320
OIFC01000507
[OIFC] human gut metagenome; stool
1529
1456
-
His
GTG
[ENA]
¢þ
>WENV182407327
OIFC01000602
[OIFC] human gut metagenome; stool
1540
1465
-
Met
CAT
[ENA]
¢þ
>WENV182407287
OIFC01000095
[OIFC] human gut metagenome; stool
1549
1474
-
Gly
GCC
[ENA]
¢þ
>WENV182407282
OIFC01000072
[OIFC] human gut metagenome; stool
1583
1509
-
Gln
TTG
[ENA]
¢þ
>WENV182407326
OIFC01000602
[OIFC] human gut metagenome; stool
1636
1562
-
Ala
TGC
[ENA]
¢þ
>WENV182407319
OIFC01000507
[OIFC] human gut metagenome; stool
1639
1566
-
Trp
CCA
[ENA]
¢þ
>WENV182407281
OIFC01000072
[OIFC] human gut metagenome; stool
1695
1611
-
Leu
TAG
[ENA]
¢þ
>WENV182407325
OIFC01000602
[OIFC] human gut metagenome; stool
1722
1649
-
Pro
TGG
[ENA]
¢þ
>WENV182407318
OIFC01000507
[OIFC] human gut metagenome; stool
1725
1643
-
Tyr
GTA
[ENA]
¢þ
>WENV182407280
OIFC01000072
[OIFC] human gut metagenome; stool
1777
1701
-
Met
CAT
[ENA]
¢þ
>WENV182407317
OIFC01000507
[OIFC] human gut metagenome; stool
1802
1730
-
Phe
GAA
[ENA]
¢þ
>WENV182407316
OIFC01000507
[OIFC] human gut metagenome; stool
1923
1848
-
Asp
GTC
[ENA]
¢þ
>WENV182407315
OIFC01000507
[OIFC] human gut metagenome; stool
2007
1933
-
Val
TAC
[ENA]
¢þ
>WENV182407286
OIFC01000086
[OIFC] human gut metagenome; stool
2025
1949
-
Arg
TCT
[ENA]
¢þ
>WENV182407312
OIFC01000351
[OIFC] human gut metagenome; stool
2109
2184
+
Arg
TCT
[ENA]
¢þ
>WENV182407285
OIFC01000086
[OIFC] human gut metagenome; stool
2154
2078
-
Pro
TGG
[ENA]
¢þ
>WENV182407310
OIFC01000289
[OIFC] human gut metagenome; stool
2533
2609
+
fMet
CAT
[ENA]
¢þ
>WENV182407270
OIFC01000024
[OIFC] human gut metagenome; stool
2825
2749
-
Arg
TCT
[ENA]
¢þ
>WENV182407269
OIFC01000024
[OIFC] human gut metagenome; stool
3001
2926
-
Ile2
CAT
[ENA]
¢þ
>WENV182407301
OIFC01000147
[OIFC] human gut metagenome; stool
3045
2970
-
Lys
CTT
[ENA]
¢þ
>WENV182407300
OIFC01000147
[OIFC] human gut metagenome; stool
3147
3072
-
Lys
TTT
[ENA]
¢þ
>WENV182407306
OIFC01000221
[OIFC] human gut metagenome; stool
3502
3577
+
Thr
TGT
[ENA]
¢þ
>WENV182407304
OIFC01000167
[OIFC] human gut metagenome; stool
3505
3430
-
Ala
TGC
[ENA]
¢þ
>WENV182407307
OIFC01000221
[OIFC] human gut metagenome; stool
3586
3670
+
Tyr
GTA
[ENA]
¢þ
>WENV182407303
OIFC01000167
[OIFC] human gut metagenome; stool
3635
3559
-
Ile
GAT
[ENA]
¢þ
>WENV182407308
OIFC01000221
[OIFC] human gut metagenome; stool
3787
3861
+
Gly
TCC
[ENA]
¢þ
>WENV182407289
OIFC01000108
[OIFC] human gut metagenome; stool
3852
3924
+
Ala
TGC
[ENA]
¢þ
>WENV182407309
OIFC01000221
[OIFC] human gut metagenome; stool
3868
3943
+
Thr
GGT
[ENA]
¢þ
>WENV182407305
OIFC01000173
[OIFC] human gut metagenome; stool
4868
4943
+
Ala
GGC
[ENA]
¢þ
>WENV182407298
OIFC01000114
[OIFC] human gut metagenome; stool
5996
6081
+
Leu
GAG
[ENA]
¢þ
>WENV182407283
OIFC01000086
[OIFC] human gut metagenome; stool
6542
6617
+
Phe
GAA
[ENA]
¢þ
>WENV182407284
OIFC01000086
[OIFC] human gut metagenome; stool
6620
6695
+
Asn
GTT
[ENA]
¢þ
>WENV182407279
OIFC01000056
[OIFC] human gut metagenome; stool
6903
6827
-
Ile2
CAT
[ENA]
¢þ
>WENV182407288
OIFC01000099
[OIFC] human gut metagenome; stool
7068
7144
+
Arg
TCT
[ENA]
¢þ
>WENV182407290
OIFC01000108
[OIFC] human gut metagenome; stool
7239
7313
+
Val
TAC
[ENA]
¢þ
>WENV182407291
OIFC01000108
[OIFC] human gut metagenome; stool
7318
7392
+
Lys
TTT
[ENA]
¢þ
>WENV182407292
OIFC01000108
[OIFC] human gut metagenome; stool
7407
7490
+
Leu
TAG
[ENA]
¢þ
>WENV182407293
OIFC01000108
[OIFC] human gut metagenome; stool
7496
7571
+
Thr
TGT
[ENA]
¢þ
>WENV182407294
OIFC01000108
[OIFC] human gut metagenome; stool
7576
7647
+
Gly
GCC
[ENA]
¢þ
>WENV182407295
OIFC01000108
[OIFC] human gut metagenome; stool
7663
7748
+
Leu
TAA
[ENA]
¢þ
>WENV182407296
OIFC01000108
[OIFC] human gut metagenome; stool
7763
7836
+
Arg
ACG
[ENA]
¢þ
>WENV182407297
OIFC01000108
[OIFC] human gut metagenome; stool
7848
7921
+
Pro
TGG
[ENA]
¢þ
>WENV182407257
OIFC01000016
[OIFC] human gut metagenome; stool
11389
11305
-
Leu
CAA
[ENA]
¢þ
>WENV182407277
OIFC01000049
[OIFC] human gut metagenome; stool
13051
12976
-
Lys
TTT
[ENA]
¢þ
>WENV182407278
OIFC01000051
[OIFC] human gut metagenome; stool
13884
13790
-
SeC
TCA
[ENA]
¢þ
>WENV182407275
OIFC01000026
[OIFC] human gut metagenome; stool
22535
22460
-
Asn
GTT
[ENA]
¢þ
>WENV182407274
OIFC01000026
[OIFC] human gut metagenome; stool
24944
24869
-
Asn
GTT
[ENA]
¢þ
>WENV182407271
OIFC01000026
[OIFC] human gut metagenome; stool
26693
26768
+
Asn
GTT
[ENA]
¢þ
>WENV182407258
OIFC01000017
[OIFC] human gut metagenome; stool
29235
29310
+
Phe
GAA
[ENA]
¢þ
>WENV182407231
OIFC01000004
[OIFC] human gut metagenome; stool
33333
33409
+
Val
GAC
[ENA]
¢þ
>WENV182407232
OIFC01000004
[OIFC] human gut metagenome; stool
33414
33490
+
Val
GAC
[ENA]
¢þ
>WENV182407268
OIFC01000024
[OIFC] human gut metagenome; stool
44747
44831
+
Tyr
GTA
[ENA]
¢þ
>WENV182407262
OIFC01000018
[OIFC] human gut metagenome; stool
44855
44780
-
Thr
CGT
[ENA]
¢þ
>WENV182407247
OIFC01000011
[OIFC] human gut metagenome; stool
55681
55605
-
fMet
CAT
[ENA]
¢þ
>WENV182407276
OIFC01000028
[OIFC] human gut metagenome; stool
56298
56222
-
Arg
ACG
[ENA]
¢þ
>WENV182407243
OIFC01000008
[OIFC] human gut metagenome; stool
56491
56418
-
Gly
CCC
[ENA]
¢þ
>WENV182407246
OIFC01000011
[OIFC] human gut metagenome; stool
59548
59462
-
Leu
GAG
[ENA]
¢þ
>WENV182407273
OIFC01000026
[OIFC] human gut metagenome; stool
66660
66585
-
Asn
GTT
[ENA]
¢þ
>WENV182407272
OIFC01000026
[OIFC] human gut metagenome; stool
67652
67741
+
Ser
CGA
[ENA]
¢þ
>WENV182407267
OIFC01000019
[OIFC] human gut metagenome; stool
74153
74077
-
Pro
TGG
[ENA]
¢þ
>WENV182407266
OIFC01000019
[OIFC] human gut metagenome; stool
74282
74196
-
Leu
CAG
[ENA]
¢þ
>WENV182407265
OIFC01000019
[OIFC] human gut metagenome; stool
74378
74303
-
His
GTG
[ENA]
¢þ
>WENV182407264
OIFC01000019
[OIFC] human gut metagenome; stool
74513
74437
-
Arg
CCG
[ENA]
¢þ
>WENV182407233
OIFC01000005
[OIFC] human gut metagenome; stool
86213
86289
+
Met
CAT
[ENA]
¢þ
>WENV182407234
OIFC01000005
[OIFC] human gut metagenome; stool
86300
86384
+
Leu
TAG
[ENA]
¢þ
>WENV182407235
OIFC01000005
[OIFC] human gut metagenome; stool
86408
86482
+
Gln
TTG
[ENA]
¢þ
>WENV182407236
OIFC01000005
[OIFC] human gut metagenome; stool
86517
86591
+
Gln
TTG
[ENA]
¢þ
>WENV182407237
OIFC01000005
[OIFC] human gut metagenome; stool
86607
86683
+
Met
CAT
[ENA]
¢þ
>WENV182407238
OIFC01000005
[OIFC] human gut metagenome; stool
86732
86806
+
Gln
CTG
[ENA]
¢þ
>WENV182407239
OIFC01000005
[OIFC] human gut metagenome; stool
86844
86918
+
Gln
CTG
[ENA]
¢þ
>WENV182407250
OIFC01000012
[OIFC] human gut metagenome; stool
87140
87054
-
Leu
TAA
[ENA]
¢þ
>WENV182407249
OIFC01000012
[OIFC] human gut metagenome; stool
87226
87153
-
Cys
GCA
[ENA]
¢þ
>WENV182407248
OIFC01000012
[OIFC] human gut metagenome; stool
87355
87280
-
Gly
GCC
[ENA]
¢þ
>WENV182407230
OIFC01000003
[OIFC] human gut metagenome; stool
103822
103728
-
SeC
TCA
[ENA]
¢þ
>WENV182407261
OIFC01000018
[OIFC] human gut metagenome; stool
105384
105308
-
Asp
GTC
[ENA]
¢þ
>WENV182407263
OIFC01000019
[OIFC] human gut metagenome; stool
109057
108982
-
Trp
CCA
[ENA]
¢þ
>WENV182407260
OIFC01000018
[OIFC] human gut metagenome; stool
113609
113533
-
Asp
GTC
[ENA]
¢þ
>WENV182407256
OIFC01000016
[OIFC] human gut metagenome; stool
117828
117753
-
Gly
GCC
[ENA]
¢þ
>WENV182407255
OIFC01000016
[OIFC] human gut metagenome; stool
117940
117865
-
Gly
GCC
[ENA]
¢þ
>WENV182407245
OIFC01000010
[OIFC] human gut metagenome; stool
118780
118855
+
Ile2
CAT
[ENA]
¢þ
>WENV182407251
OIFC01000013
[OIFC] human gut metagenome; stool
124298
124372
+
fMet
CAT
[ENA]
¢þ
>WENV182407227
OIFC01000002
[OIFC] human gut metagenome; stool
138233
138320
+
Ser
GGA
[ENA]
¢þ
>WENV182407244
OIFC01000009
[OIFC] human gut metagenome; stool
141683
141596
-
Ser
GGA
[ENA]
¢þ
>WENV182407242
OIFC01000008
[OIFC] human gut metagenome; stool
170455
170530
+
Phe
GAA
[ENA]
¢þ
>WENV182407228
OIFC01000002
[OIFC] human gut metagenome; stool
190245
190332
+
Ser
TGA
[ENA]
¢þ
>WENV182407221
OIFC01000001
[OIFC] human gut metagenome; stool
204261
204337
+
Pro
GGG
[ENA]
¢þ
>WENV182407229
OIFC01000003
[OIFC] human gut metagenome; stool
234649
234725
+
Pro
CGG
[ENA]
¢þ
>WENV182407222
OIFC01000001
[OIFC] human gut metagenome; stool
374161
374235
+
Arg
CCT
[ENA]
¢þ
>WENV182407226
OIFC01000001
[OIFC] human gut metagenome; stool
425392
425317
-
Ala
GGC
[ENA]
¢þ
>WENV182407223
OIFC01000001
[OIFC] human gut metagenome; stool
428091
428166
+
Val
TAC
[ENA]
¢þ
>WENV182407224
OIFC01000001
[OIFC] human gut metagenome; stool
428211
428286
+
Val
TAC
[ENA]
¢þ
>WENV182407225
OIFC01000001
[OIFC] human gut metagenome; stool
428290
428365
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK