This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIFO] human gut metagenome; stool
HIT:
118 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182411182
OIFO01000022
[OIFO] human gut metagenome; stool
3
77
+
Gln
CTG
[ENA]
¢þ
>WENV182411248
OIFO01000087
[OIFO] human gut metagenome; stool
3
77
+
Asp
GTC
[ENA]
¢þ
>WENV182411275
OIFO01000451
[OIFO] human gut metagenome; stool
45
121
+
Arg
CCG
[ENA]
¢þ
>WENV182411257
OIFO01000132
[OIFO] human gut metagenome; stool
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV182411252
OIFO01000096
[OIFO] human gut metagenome; stool
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV182411272
OIFO01000219
[OIFO] human gut metagenome; stool
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV182411259
OIFO01000141
[OIFO] human gut metagenome; stool
76
2
-
Asn
GTT
[ENA]
¢þ
>WENV182411243
OIFO01000082
[OIFO] human gut metagenome; stool
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV182411216
OIFO01000044
[OIFO] human gut metagenome; stool
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV182411205
OIFO01000039
[OIFO] human gut metagenome; stool
121
196
+
Val
TAC
[ENA]
¢þ
>WENV182411228
OIFO01000069
[OIFO] human gut metagenome; stool
141
217
+
Arg
ACG
[ENA]
¢þ
>WENV182411206
OIFO01000039
[OIFO] human gut metagenome; stool
243
318
+
Val
TAC
[ENA]
¢þ
>WENV182411162
OIFO01000001
[OIFO] human gut metagenome; stool
264
179
-
Leu
TAA
[ENA]
¢þ
>WENV182411277
OIFO01001001
[OIFO] human gut metagenome; stool
296
221
-
Ala
TGC
[ENA]
¢þ
>WENV182411249
OIFO01000089
[OIFO] human gut metagenome; stool
319
244
-
Pro
TGG
[ENA]
¢þ
>WENV182411207
OIFO01000039
[OIFO] human gut metagenome; stool
323
398
+
Lys
TTT
[ENA]
¢þ
>WENV182411256
OIFO01000130
[OIFO] human gut metagenome; stool
329
244
-
Ser
TGA
[ENA]
¢þ
>WENV182411264
OIFO01000184
[OIFO] human gut metagenome; stool
339
265
-
Glu
TTC
[ENA]
¢þ
>WENV182411161
OIFO01000001
[OIFO] human gut metagenome; stool
353
280
-
Gly
GCC
[ENA]
¢þ
>WENV182411204
OIFO01000038
[OIFO] human gut metagenome; stool
369
294
-
Phe
GAA
[ENA]
¢þ
>WENV182411270
OIFO01000199
[OIFO] human gut metagenome; stool
402
327
-
Thr
GGT
[ENA]
¢þ
>WENV182411276
OIFO01001001
[OIFO] human gut metagenome; stool
415
339
-
Ile
GAT
[ENA]
¢þ
>WENV182411240
OIFO01000079
[OIFO] human gut metagenome; stool
452
525
+
Thr
CGT
[ENA]
¢þ
>WENV182411269
OIFO01000199
[OIFO] human gut metagenome; stool
483
409
-
Gly
TCC
[ENA]
¢þ
>WENV182411203
OIFO01000038
[OIFO] human gut metagenome; stool
550
623
+
Pro
CGG
[ENA]
¢þ
>WENV182411268
OIFO01000199
[OIFO] human gut metagenome; stool
684
600
-
Tyr
GTA
[ENA]
¢þ
>WENV182411273
OIFO01000296
[OIFO] human gut metagenome; stool
745
821
+
Ile
GAT
[ENA]
¢þ
>WENV182411267
OIFO01000199
[OIFO] human gut metagenome; stool
768
693
-
Thr
TGT
[ENA]
¢þ
>WENV182411274
OIFO01000296
[OIFO] human gut metagenome; stool
965
1040
+
Ala
TGC
[ENA]
¢þ
>WENV182411263
OIFO01000163
[OIFO] human gut metagenome; stool
1248
1172
-
Arg
TCT
[ENA]
¢þ
>WENV182411236
OIFO01000077
[OIFO] human gut metagenome; stool
1388
1464
+
Asp
GTC
[ENA]
¢þ
>WENV182411200
OIFO01000036
[OIFO] human gut metagenome; stool
2731
2655
-
Arg
TCT
[ENA]
¢þ
>WENV182411271
OIFO01000219
[OIFO] human gut metagenome; stool
2775
2850
+
Val
TAC
[ENA]
¢þ
>WENV182411199
OIFO01000036
[OIFO] human gut metagenome; stool
2907
2832
-
Ile2
CAT
[ENA]
¢þ
>WENV182411266
OIFO01000185
[OIFO] human gut metagenome; stool
3297
3223
-
Ala
TGC
[ENA]
¢þ
>WENV182411265
OIFO01000185
[OIFO] human gut metagenome; stool
3388
3314
-
Ile
GAT
[ENA]
¢þ
>WENV182411184
OIFO01000024
[OIFO] human gut metagenome; stool
5116
5043
-
Lys
TTT
[ENA]
¢þ
>WENV182411260
OIFO01000144
[OIFO] human gut metagenome; stool
5312
5228
-
Leu
CAA
[ENA]
¢þ
>WENV182411231
OIFO01000071
[OIFO] human gut metagenome; stool
5876
5788
-
Ser
GGA
[ENA]
¢þ
>WENV182411233
OIFO01000072
[OIFO] human gut metagenome; stool
8762
8686
-
Val
TAC
[ENA]
¢þ
>WENV182411262
OIFO01000161
[OIFO] human gut metagenome; stool
8824
8750
-
Thr
TGT
[ENA]
¢þ
>WENV182411232
OIFO01000072
[OIFO] human gut metagenome; stool
8877
8801
-
Val
TAC
[ENA]
¢þ
>WENV182411237
OIFO01000077
[OIFO] human gut metagenome; stool
9613
9689
+
Asp
GTC
[ENA]
¢þ
>WENV182411261
OIFO01000157
[OIFO] human gut metagenome; stool
9892
9965
+
Phe
GAA
[ENA]
¢þ
>WENV182411209
OIFO01000042
[OIFO] human gut metagenome; stool
11494
11409
-
Ser
TGA
[ENA]
¢þ
>WENV182411258
OIFO01000141
[OIFO] human gut metagenome; stool
13181
13255
+
Thr
TGT
[ENA]
¢þ
>WENV182411163
OIFO01000002
[OIFO] human gut metagenome; stool
17780
17855
+
Thr
CGT
[ENA]
¢þ
>WENV182411250
OIFO01000092
[OIFO] human gut metagenome; stool
18784
18711
-
Gly
CCC
[ENA]
¢þ
>WENV182411255
OIFO01000126
[OIFO] human gut metagenome; stool
19851
19924
+
Lys
CTT
[ENA]
¢þ
>WENV182411253
OIFO01000125
[OIFO] human gut metagenome; stool
20118
20210
+
Ser
GCT
[ENA]
¢þ
>WENV182411254
OIFO01000125
[OIFO] human gut metagenome; stool
20214
20290
+
Arg
ACG
[ENA]
¢þ
>WENV182411225
OIFO01000057
[OIFO] human gut metagenome; stool
23644
23569
-
Asn
GTT
[ENA]
¢þ
>WENV182411176
OIFO01000011
[OIFO] human gut metagenome; stool
23842
23929
+
Ser
GGA
[ENA]
¢þ
>WENV182411227
OIFO01000062
[OIFO] human gut metagenome; stool
24989
25064
+
Ile2
CAT
[ENA]
¢þ
>WENV182411208
OIFO01000042
[OIFO] human gut metagenome; stool
25114
25187
+
Trp
CCA
[ENA]
¢þ
>WENV182411224
OIFO01000057
[OIFO] human gut metagenome; stool
26053
25978
-
Asn
GTT
[ENA]
¢þ
>WENV182411221
OIFO01000057
[OIFO] human gut metagenome; stool
27802
27877
+
Asn
GTT
[ENA]
¢þ
>WENV182411242
OIFO01000082
[OIFO] human gut metagenome; stool
29235
29310
+
Phe
GAA
[ENA]
¢þ
>WENV182411230
OIFO01000071
[OIFO] human gut metagenome; stool
30207
30132
-
His
GTG
[ENA]
¢þ
>WENV182411174
OIFO01000009
[OIFO] human gut metagenome; stool
30879
30953
+
Met
CAT
[ENA]
¢þ
>WENV182411175
OIFO01000009
[OIFO] human gut metagenome; stool
31014
31088
+
Met
CAT
[ENA]
¢þ
>WENV182411251
OIFO01000093
[OIFO] human gut metagenome; stool
31805
31880
+
Phe
GAA
[ENA]
¢þ
>WENV182411226
OIFO01000059
[OIFO] human gut metagenome; stool
36115
36041
-
Arg
CCT
[ENA]
¢þ
>WENV182411247
OIFO01000086
[OIFO] human gut metagenome; stool
40410
40337
-
Gly
GCC
[ENA]
¢þ
>WENV182411179
OIFO01000018
[OIFO] human gut metagenome; stool
40847
40774
-
Gly
CCC
[ENA]
¢þ
>WENV182411246
OIFO01000085
[OIFO] human gut metagenome; stool
41821
41746
-
Ala
GGC
[ENA]
¢þ
>WENV182411245
OIFO01000085
[OIFO] human gut metagenome; stool
41936
41861
-
Ala
GGC
[ENA]
¢þ
>WENV182411234
OIFO01000073
[OIFO] human gut metagenome; stool
42253
42177
-
Pro
CGG
[ENA]
¢þ
>WENV182411241
OIFO01000081
[OIFO] human gut metagenome; stool
43452
43546
+
SeC
TCA
[ENA]
¢þ
>WENV182411235
OIFO01000075
[OIFO] human gut metagenome; stool
44195
44267
+
Glu
TTC
[ENA]
¢þ
>WENV182411244
OIFO01000083
[OIFO] human gut metagenome; stool
44473
44399
-
Asn
GTT
[ENA]
¢þ
>WENV182411198
OIFO01000036
[OIFO] human gut metagenome; stool
44653
44737
+
Tyr
GTA
[ENA]
¢þ
>WENV182411178
OIFO01000014
[OIFO] human gut metagenome; stool
45415
45339
-
fMet
CAT
[ENA]
¢þ
>WENV182411220
OIFO01000054
[OIFO] human gut metagenome; stool
46538
46464
-
Arg
TCT
[ENA]
¢þ
>WENV182411186
OIFO01000025
[OIFO] human gut metagenome; stool
47020
46946
-
Ala
GGC
[ENA]
¢þ
>WENV182411177
OIFO01000014
[OIFO] human gut metagenome; stool
49282
49196
-
Leu
GAG
[ENA]
¢þ
>WENV182411239
OIFO01000078
[OIFO] human gut metagenome; stool
50067
49994
-
Trp
CCA
[ENA]
¢þ
>WENV182411238
OIFO01000078
[OIFO] human gut metagenome; stool
51432
51360
-
Thr
GGT
[ENA]
¢þ
>WENV182411229
OIFO01000070
[OIFO] human gut metagenome; stool
54817
54890
+
fMet
CAT
[ENA]
¢þ
>WENV182411218
OIFO01000047
[OIFO] human gut metagenome; stool
58947
58873
-
Ile2
CAT
[ENA]
¢þ
>WENV182411217
OIFO01000045
[OIFO] human gut metagenome; stool
65308
65390
+
Leu
TAG
[ENA]
¢þ
>WENV182411160
OIFO01000001
[OIFO] human gut metagenome; stool
67219
67291
+
Arg
CCT
[ENA]
¢þ
>WENV182411173
OIFO01000007
[OIFO] human gut metagenome; stool
67509
67433
-
Pro
GGG
[ENA]
¢þ
>WENV182411223
OIFO01000057
[OIFO] human gut metagenome; stool
67769
67694
-
Asn
GTT
[ENA]
¢þ
>WENV182411192
OIFO01000028
[OIFO] human gut metagenome; stool
67823
67894
+
Gln
TTG
[ENA]
¢þ
>WENV182411222
OIFO01000057
[OIFO] human gut metagenome; stool
68761
68850
+
Ser
CGA
[ENA]
¢þ
>WENV182411172
OIFO01000006
[OIFO] human gut metagenome; stool
71065
70977
-
Ser
GGA
[ENA]
¢þ
>WENV182411191
OIFO01000026
[OIFO] human gut metagenome; stool
74153
74077
-
Pro
TGG
[ENA]
¢þ
>WENV182411190
OIFO01000026
[OIFO] human gut metagenome; stool
74282
74196
-
Leu
CAG
[ENA]
¢þ
>WENV182411189
OIFO01000026
[OIFO] human gut metagenome; stool
74378
74303
-
His
GTG
[ENA]
¢þ
>WENV182411188
OIFO01000026
[OIFO] human gut metagenome; stool
74513
74437
-
Arg
CCG
[ENA]
¢þ
>WENV182411219
OIFO01000051
[OIFO] human gut metagenome; stool
75966
76050
+
Leu
CAA
[ENA]
¢þ
>WENV182411210
OIFO01000044
[OIFO] human gut metagenome; stool
86103
86179
+
Met
CAT
[ENA]
¢þ
>WENV182411211
OIFO01000044
[OIFO] human gut metagenome; stool
86190
86274
+
Leu
TAG
[ENA]
¢þ
>WENV182411212
OIFO01000044
[OIFO] human gut metagenome; stool
86298
86372
+
Gln
TTG
[ENA]
¢þ
>WENV182411213
OIFO01000044
[OIFO] human gut metagenome; stool
86407
86481
+
Gln
TTG
[ENA]
¢þ
>WENV182411214
OIFO01000044
[OIFO] human gut metagenome; stool
86497
86573
+
Met
CAT
[ENA]
¢þ
>WENV182411215
OIFO01000044
[OIFO] human gut metagenome; stool
86622
86696
+
Gln
CTG
[ENA]
¢þ
>WENV182411195
OIFO01000029
[OIFO] human gut metagenome; stool
87140
87054
-
Leu
TAA
[ENA]
¢þ
>WENV182411194
OIFO01000029
[OIFO] human gut metagenome; stool
87226
87153
-
Cys
GCA
[ENA]
¢þ
>WENV182411193
OIFO01000029
[OIFO] human gut metagenome; stool
87355
87280
-
Gly
GCC
[ENA]
¢þ
>WENV182411165
OIFO01000003
[OIFO] human gut metagenome; stool
92118
92031
-
Ser
TGA
[ENA]
¢þ
>WENV182411171
OIFO01000006
[OIFO] human gut metagenome; stool
94339
94268
-
Gln
CTG
[ENA]
¢þ
>WENV182411202
OIFO01000037
[OIFO] human gut metagenome; stool
94795
94720
-
Gly
GCC
[ENA]
¢þ
>WENV182411201
OIFO01000037
[OIFO] human gut metagenome; stool
94907
94832
-
Gly
GCC
[ENA]
¢þ
>WENV182411183
OIFO01000024
[OIFO] human gut metagenome; stool
100661
100587
-
Thr
TGT
[ENA]
¢þ
>WENV182411197
OIFO01000031
[OIFO] human gut metagenome; stool
103744
103818
+
Cys
GCA
[ENA]
¢þ
>WENV182411196
OIFO01000030
[OIFO] human gut metagenome; stool
104156
104232
+
fMet
CAT
[ENA]
¢þ
>WENV182411187
OIFO01000026
[OIFO] human gut metagenome; stool
109057
108982
-
Trp
CCA
[ENA]
¢þ
>WENV182411185
OIFO01000025
[OIFO] human gut metagenome; stool
111333
111259
-
Asp
GTC
[ENA]
¢þ
>WENV182411181
OIFO01000020
[OIFO] human gut metagenome; stool
120224
120150
-
Glu
CTC
[ENA]
¢þ
>WENV182411180
OIFO01000020
[OIFO] human gut metagenome; stool
120666
120579
-
Ser
GCT
[ENA]
¢þ
>WENV182411169
OIFO01000006
[OIFO] human gut metagenome; stool
129156
129231
+
Pro
GGG
[ENA]
¢þ
>WENV182411166
OIFO01000004
[OIFO] human gut metagenome; stool
136015
135943
-
Arg
CCG
[ENA]
¢þ
>WENV182411164
OIFO01000003
[OIFO] human gut metagenome; stool
144130
144043
-
Ser
GGA
[ENA]
¢þ
>WENV182411168
OIFO01000005
[OIFO] human gut metagenome; stool
186775
186699
-
Val
GAC
[ENA]
¢þ
>WENV182411167
OIFO01000005
[OIFO] human gut metagenome; stool
186856
186780
-
Val
GAC
[ENA]
¢þ
>WENV182411170
OIFO01000006
[OIFO] human gut metagenome; stool
205451
205524
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK