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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIGS] human gut metagenome; human gut
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182421517
OIGS01003997
[OIGS] human gut metagenome; human gut
40
128
+
Asn
GTT
[ENA]
¢þ
>WENV182421511
OIGS01003021
[OIGS] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182421524
OIGS01004307
[OIGS] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182421478
OIGS01000367
[OIGS] human gut metagenome; human gut
120
202
+
Leu
CAG
[ENA]
¢þ
>WENV182421512
OIGS01003207
[OIGS] human gut metagenome; human gut
126
199
+
Gly
CCC
[ENA]
¢þ
>WENV182421518
OIGS01003997
[OIGS] human gut metagenome; human gut
129
203
+
Trp
CCA
[ENA]
¢þ
>WENV182421541
OIGS01005323
[OIGS] human gut metagenome; human gut
140
65
-
Phe
GAA
[ENA]
¢þ
>WENV182421513
OIGS01003374
[OIGS] human gut metagenome; human gut
154
226
+
Cys
GCA
[ENA]
¢þ
>WENV182421547
OIGS01006635
[OIGS] human gut metagenome; human gut
166
253
+
Ser
GGA
[ENA]
¢þ
>WENV182421490
OIGS01000794
[OIGS] human gut metagenome; human gut
191
275
+
Leu
CAA
[ENA]
¢þ
>WENV182421525
OIGS01004900
[OIGS] human gut metagenome; human gut
208
283
+
Ile2
CAT
[ENA]
¢þ
>WENV182421519
OIGS01003997
[OIGS] human gut metagenome; human gut
210
286
+
Asn
GTT
[ENA]
¢þ
>WENV182421531
OIGS01004933
[OIGS] human gut metagenome; human gut
212
124
-
Leu
TAG
[ENA]
¢þ
>WENV182421540
OIGS01005323
[OIGS] human gut metagenome; human gut
219
145
-
Cys
GCA
[ENA]
¢þ
>WENV182421497
OIGS01001104
[OIGS] human gut metagenome; human gut
237
331
+
SeC
TCA
[ENA]
¢þ
>WENV182421479
OIGS01000367
[OIGS] human gut metagenome; human gut
239
323
+
Leu
GAG
[ENA]
¢þ
>WENV182421523
OIGS01004164
[OIGS] human gut metagenome; human gut
243
167
-
Val
GAC
[ENA]
¢þ
>WENV182421549
OIGS01006724
[OIGS] human gut metagenome; human gut
285
210
-
Lys
TTT
[ENA]
¢þ
>WENV182421530
OIGS01004933
[OIGS] human gut metagenome; human gut
296
213
-
Leu
AAG
[ENA]
¢þ
>WENV182421539
OIGS01005323
[OIGS] human gut metagenome; human gut
303
227
-
Asp
GTC
[ENA]
¢þ
>WENV182421534
OIGS01005259
[OIGS] human gut metagenome; human gut
308
213
-
Ser
GCT
[ENA]
¢þ
>WENV182421544
OIGS01005461
[OIGS] human gut metagenome; human gut
310
236
-
Pro
TGG
[ENA]
¢þ
>WENV182421546
OIGS01005837
[OIGS] human gut metagenome; human gut
345
256
-
Ser
CGA
[ENA]
¢þ
>WENV182421480
OIGS01000367
[OIGS] human gut metagenome; human gut
345
418
+
Gly
GCC
[ENA]
¢þ
>WENV182421520
OIGS01003997
[OIGS] human gut metagenome; human gut
369
460
+
Ser
TGA
[ENA]
¢þ
>WENV182421538
OIGS01005323
[OIGS] human gut metagenome; human gut
379
304
-
Phe
GAA
[ENA]
¢þ
>WENV182421529
OIGS01004933
[OIGS] human gut metagenome; human gut
394
310
-
Leu
CAG
[ENA]
¢þ
>WENV182421543
OIGS01005461
[OIGS] human gut metagenome; human gut
394
321
-
Gly
TCC
[ENA]
¢þ
>WENV182421481
OIGS01000367
[OIGS] human gut metagenome; human gut
432
516
+
Leu
TAA
[ENA]
¢þ
>WENV182421522
OIGS01004164
[OIGS] human gut metagenome; human gut
434
361
-
Gly
GCC
[ENA]
¢þ
>WENV182421548
OIGS01006724
[OIGS] human gut metagenome; human gut
450
375
-
Lys
TTT
[ENA]
¢þ
>WENV182421537
OIGS01005323
[OIGS] human gut metagenome; human gut
459
385
-
Gln
TTG
[ENA]
¢þ
>WENV182421528
OIGS01004933
[OIGS] human gut metagenome; human gut
481
395
-
Leu
AAG
[ENA]
¢þ
>WENV182421542
OIGS01005461
[OIGS] human gut metagenome; human gut
486
400
-
Leu
TAA
[ENA]
¢þ
>WENV182421521
OIGS01004164
[OIGS] human gut metagenome; human gut
511
435
-
Met
CAT
[ENA]
¢þ
>WENV182421533
OIGS01005100
[OIGS] human gut metagenome; human gut
540
464
-
Pro
TGG
[ENA]
¢þ
>WENV182421536
OIGS01005323
[OIGS] human gut metagenome; human gut
541
466
-
Phe
GAA
[ENA]
¢þ
>WENV182421510
OIGS01002713
[OIGS] human gut metagenome; human gut
580
667
+
Ser
TGA
[ENA]
¢þ
>WENV182421527
OIGS01004933
[OIGS] human gut metagenome; human gut
581
493
-
Leu
TAA
[ENA]
¢þ
>WENV182421509
OIGS01002587
[OIGS] human gut metagenome; human gut
585
512
-
Lys
TTT
[ENA]
¢þ
>WENV182421506
OIGS01001960
[OIGS] human gut metagenome; human gut
586
669
+
Tyr
GTA
[ENA]
¢þ
>WENV182421475
OIGS01000061
[OIGS] human gut metagenome; human gut
591
519
-
Glu
TTC
[ENA]
¢þ
>WENV182421545
OIGS01005498
[OIGS] human gut metagenome; human gut
602
528
-
Gln
CTG
[ENA]
¢þ
>WENV182421532
OIGS01005100
[OIGS] human gut metagenome; human gut
620
546
-
Thr
CGT
[ENA]
¢þ
>WENV182421535
OIGS01005323
[OIGS] human gut metagenome; human gut
624
547
-
Asp
GTC
[ENA]
¢þ
>WENV182421515
OIGS01003674
[OIGS] human gut metagenome; human gut
673
748
+
Pro
TGG
[ENA]
¢þ
>WENV182421514
OIGS01003612
[OIGS] human gut metagenome; human gut
675
601
-
Ala
GGC
[ENA]
¢þ
>WENV182421526
OIGS01004933
[OIGS] human gut metagenome; human gut
678
594
-
Leu
AAG
[ENA]
¢þ
>WENV182421507
OIGS01001960
[OIGS] human gut metagenome; human gut
760
832
+
Thr
GGT
[ENA]
¢þ
>WENV182421516
OIGS01003674
[OIGS] human gut metagenome; human gut
784
859
+
Pro
TGG
[ENA]
¢þ
>WENV182421504
OIGS01001667
[OIGS] human gut metagenome; human gut
786
702
-
Tyr
GTA
[ENA]
¢þ
>WENV182421505
OIGS01001747
[OIGS] human gut metagenome; human gut
802
727
-
Val
TAC
[ENA]
¢þ
>WENV182421484
OIGS01000592
[OIGS] human gut metagenome; human gut
852
925
+
Trp
CCA
[ENA]
¢þ
>WENV182421503
OIGS01001633
[OIGS] human gut metagenome; human gut
862
937
+
Asn
GTT
[ENA]
¢þ
>WENV182421501
OIGS01001236
[OIGS] human gut metagenome; human gut
887
803
-
Leu
CAA
[ENA]
¢þ
>WENV182421502
OIGS01001285
[OIGS] human gut metagenome; human gut
1029
955
-
Asn
GTT
[ENA]
¢þ
>WENV182421508
OIGS01002399
[OIGS] human gut metagenome; human gut
1087
1163
+
Asp
GTC
[ENA]
¢þ
>WENV182421485
OIGS01000709
[OIGS] human gut metagenome; human gut
1110
1186
+
Arg
CCG
[ENA]
¢þ
>WENV182421486
OIGS01000709
[OIGS] human gut metagenome; human gut
1245
1320
+
His
GTG
[ENA]
¢þ
>WENV182421487
OIGS01000709
[OIGS] human gut metagenome; human gut
1341
1427
+
Leu
CAG
[ENA]
¢þ
>WENV182421499
OIGS01001128
[OIGS] human gut metagenome; human gut
1357
1285
-
Glu
CTC
[ENA]
¢þ
>WENV182421495
OIGS01000851
[OIGS] human gut metagenome; human gut
1365
1440
+
Pro
GGG
[ENA]
¢þ
>WENV182421491
OIGS01000843
[OIGS] human gut metagenome; human gut
1492
1567
+
Thr
TGT
[ENA]
¢þ
>WENV182421498
OIGS01001128
[OIGS] human gut metagenome; human gut
1522
1435
-
Ser
GCT
[ENA]
¢þ
>WENV182421500
OIGS01001226
[OIGS] human gut metagenome; human gut
1565
1653
+
Ser
GGA
[ENA]
¢þ
>WENV182421492
OIGS01000843
[OIGS] human gut metagenome; human gut
1576
1660
+
Tyr
GTA
[ENA]
¢þ
>WENV182421483
OIGS01000442
[OIGS] human gut metagenome; human gut
1614
1686
+
Arg
CCT
[ENA]
¢þ
>WENV182421489
OIGS01000750
[OIGS] human gut metagenome; human gut
1722
1808
+
Leu
GAG
[ENA]
¢þ
>WENV182421493
OIGS01000843
[OIGS] human gut metagenome; human gut
1777
1851
+
Gly
TCC
[ENA]
¢þ
>WENV182421496
OIGS01000862
[OIGS] human gut metagenome; human gut
1822
1748
-
Thr
TGT
[ENA]
¢þ
>WENV182421494
OIGS01000843
[OIGS] human gut metagenome; human gut
1858
1933
+
Thr
GGT
[ENA]
¢þ
>WENV182421488
OIGS01000725
[OIGS] human gut metagenome; human gut
1884
1958
+
Arg
CCT
[ENA]
¢þ
>WENV182421476
OIGS01000149
[OIGS] human gut metagenome; human gut
1889
1816
-
fMet
CAT
[ENA]
¢þ
>WENV182421482
OIGS01000414
[OIGS] human gut metagenome; human gut
2083
2156
+
Phe
GAA
[ENA]
¢þ
>WENV182421477
OIGS01000259
[OIGS] human gut metagenome; human gut
2717
2802
+
Ser
TGA
[ENA]
¢þ
>WENV182421467
OIGS01000004
[OIGS] human gut metagenome; human gut
3307
3233
-
Ile2
CAT
[ENA]
¢þ
>WENV182421473
OIGS01000053
[OIGS] human gut metagenome; human gut
3365
3291
-
Ala
TGC
[ENA]
¢þ
>WENV182421472
OIGS01000053
[OIGS] human gut metagenome; human gut
3470
3394
-
Ile
GAT
[ENA]
¢þ
>WENV182421474
OIGS01000059
[OIGS] human gut metagenome; human gut
4102
4176
+
Asp
GTC
[ENA]
¢þ
>WENV182421471
OIGS01000028
[OIGS] human gut metagenome; human gut
4245
4316
+
Gln
CTG
[ENA]
¢þ
>WENV182421469
OIGS01000008
[OIGS] human gut metagenome; human gut
5016
4945
-
Gln
TTG
[ENA]
¢þ
>WENV182421470
OIGS01000009
[OIGS] human gut metagenome; human gut
7204
7129
-
Glu
TTC
[ENA]
¢þ
>WENV182421468
OIGS01000005
[OIGS] human gut metagenome; human gut
12663
12745
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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