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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OIHD] human gut metagenome; human gut
HIT:
74 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182424127
OIHD01002346
[OIHD] human gut metagenome; human gut
23
96
+
Thr
CGT
[ENA]
¢þ
>WENV182424104
OIHD01000733
[OIHD] human gut metagenome; human gut
58
133
+
Thr
GGT
[ENA]
¢þ
>WENV182424137
OIHD01004554
[OIHD] human gut metagenome; human gut
71
146
+
Pro
TGG
[ENA]
¢þ
>WENV182424153
OIHD01006376
[OIHD] human gut metagenome; human gut
71
155
+
Tyr
GTA
[ENA]
¢þ
>WENV182424095
OIHD01000283
[OIHD] human gut metagenome; human gut
83
157
+
Asn
GTT
[ENA]
¢þ
>WENV182424147
OIHD01005449
[OIHD] human gut metagenome; human gut
96
22
-
Asn
GTT
[ENA]
¢þ
>WENV182424091
OIHD01000155
[OIHD] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182424152
OIHD01005775
[OIHD] human gut metagenome; human gut
107
33
-
Gln
CTG
[ENA]
¢þ
>WENV182424122
OIHD01001771
[OIHD] human gut metagenome; human gut
140
224
+
Leu
CAA
[ENA]
¢þ
>WENV182424140
OIHD01004576
[OIHD] human gut metagenome; human gut
160
84
-
fMet
CAT
[ENA]
¢þ
>WENV182424138
OIHD01004554
[OIHD] human gut metagenome; human gut
182
257
+
Pro
TGG
[ENA]
¢þ
>WENV182424151
OIHD01005775
[OIHD] human gut metagenome; human gut
183
108
-
Asp
GTC
[ENA]
¢þ
>WENV182424121
OIHD01001721
[OIHD] human gut metagenome; human gut
195
119
-
Arg
ACG
[ENA]
¢þ
>WENV182424136
OIHD01004411
[OIHD] human gut metagenome; human gut
258
169
-
Ser
TGA
[ENA]
¢þ
>WENV182424154
OIHD01006376
[OIHD] human gut metagenome; human gut
272
346
+
Gly
TCC
[ENA]
¢þ
>WENV182424088
OIHD01000080
[OIHD] human gut metagenome; human gut
286
214
-
Arg
CCT
[ENA]
¢þ
>WENV182424143
OIHD01004672
[OIHD] human gut metagenome; human gut
288
214
-
Trp
CCA
[ENA]
¢þ
>WENV182424131
OIHD01003939
[OIHD] human gut metagenome; human gut
290
377
+
Ser
CGA
[ENA]
¢þ
>WENV182424120
OIHD01001721
[OIHD] human gut metagenome; human gut
291
199
-
Ser
GCT
[ENA]
¢þ
>WENV182424130
OIHD01003371
[OIHD] human gut metagenome; human gut
297
203
-
SeC
TCA
[ENA]
¢þ
>WENV182424096
OIHD01000465
[OIHD] human gut metagenome; human gut
307
382
+
Ile2
CAT
[ENA]
¢þ
>WENV182424139
OIHD01004576
[OIHD] human gut metagenome; human gut
326
253
-
Arg
CCG
[ENA]
¢þ
>WENV182424155
OIHD01006376
[OIHD] human gut metagenome; human gut
353
429
+
Arg
ACG
[ENA]
¢þ
>WENV182424129
OIHD01002834
[OIHD] human gut metagenome; human gut
377
452
+
Ile2
CAT
[ENA]
¢þ
>WENV182424142
OIHD01004672
[OIHD] human gut metagenome; human gut
385
294
-
Ser
GGA
[ENA]
¢þ
>WENV182424146
OIHD01005237
[OIHD] human gut metagenome; human gut
405
329
-
Pro
TGG
[ENA]
¢þ
>WENV182424108
OIHD01000745
[OIHD] human gut metagenome; human gut
418
490
+
Glu
TTC
[ENA]
¢þ
>WENV182424135
OIHD01004411
[OIHD] human gut metagenome; human gut
420
347
-
Trp
CCA
[ENA]
¢þ
>WENV182424134
OIHD01004304
[OIHD] human gut metagenome; human gut
430
505
+
Pro
GGG
[ENA]
¢þ
>WENV182424150
OIHD01005775
[OIHD] human gut metagenome; human gut
445
369
-
Asp
GTC
[ENA]
¢þ
>WENV182424141
OIHD01004672
[OIHD] human gut metagenome; human gut
466
391
-
Asn
GTT
[ENA]
¢þ
>WENV182424099
OIHD01000509
[OIHD] human gut metagenome; human gut
474
400
-
Asp
GTC
[ENA]
¢þ
>WENV182424145
OIHD01005237
[OIHD] human gut metagenome; human gut
486
411
-
Thr
TGT
[ENA]
¢þ
>WENV182424149
OIHD01005775
[OIHD] human gut metagenome; human gut
545
458
-
Cys
GCA
[ENA]
¢þ
>WENV182424148
OIHD01005680
[OIHD] human gut metagenome; human gut
552
480
-
Cys
GCA
[ENA]
¢þ
>WENV182424144
OIHD01005237
[OIHD] human gut metagenome; human gut
563
487
-
Pro
TGG
[ENA]
¢þ
>WENV182424133
OIHD01004147
[OIHD] human gut metagenome; human gut
614
541
-
Gly
GCC
[ENA]
¢þ
>WENV182424128
OIHD01002760
[OIHD] human gut metagenome; human gut
628
703
+
Phe
GAA
[ENA]
¢þ
>WENV182424119
OIHD01001585
[OIHD] human gut metagenome; human gut
694
620
-
Arg
CCT
[ENA]
¢þ
>WENV182424132
OIHD01004147
[OIHD] human gut metagenome; human gut
703
621
-
Leu
CAG
[ENA]
¢þ
>WENV182424103
OIHD01000703
[OIHD] human gut metagenome; human gut
729
653
-
Arg
TCT
[ENA]
¢þ
>WENV182424117
OIHD01001544
[OIHD] human gut metagenome; human gut
768
844
+
Arg
TCT
[ENA]
¢þ
>WENV182424114
OIHD01001323
[OIHD] human gut metagenome; human gut
799
872
+
Phe
GAA
[ENA]
¢þ
>WENV182424102
OIHD01000703
[OIHD] human gut metagenome; human gut
819
743
-
Arg
TCG
[ENA]
¢þ
>WENV182424115
OIHD01001323
[OIHD] human gut metagenome; human gut
884
957
+
Pro
CGG
[ENA]
¢þ
>WENV182424101
OIHD01000703
[OIHD] human gut metagenome; human gut
902
827
-
Ile2
CAT
[ENA]
¢þ
>WENV182424089
OIHD01000132
[OIHD] human gut metagenome; human gut
950
876
-
Ile2
CAT
[ENA]
¢þ
>WENV182424094
OIHD01000242
[OIHD] human gut metagenome; human gut
952
1025
+
Trp
CCA
[ENA]
¢þ
>WENV182424124
OIHD01001982
[OIHD] human gut metagenome; human gut
961
874
-
Ser
TGA
[ENA]
¢þ
>WENV182424118
OIHD01001582
[OIHD] human gut metagenome; human gut
1037
1124
+
Ser
GGA
[ENA]
¢þ
>WENV182424126
OIHD01002135
[OIHD] human gut metagenome; human gut
1102
1175
+
Lys
CTT
[ENA]
¢þ
>WENV182424125
OIHD01002057
[OIHD] human gut metagenome; human gut
1159
1083
-
Asp
GTC
[ENA]
¢þ
>WENV182424116
OIHD01001469
[OIHD] human gut metagenome; human gut
1159
1086
-
Gly
CCC
[ENA]
¢þ
>WENV182424090
OIHD01000138
[OIHD] human gut metagenome; human gut
1197
1281
+
Leu
CAA
[ENA]
¢þ
>WENV182424123
OIHD01001869
[OIHD] human gut metagenome; human gut
1251
1175
-
fMet
CAT
[ENA]
¢þ
>WENV182424113
OIHD01001050
[OIHD] human gut metagenome; human gut
1346
1271
-
Asn
GTT
[ENA]
¢þ
>WENV182424109
OIHD01000846
[OIHD] human gut metagenome; human gut
1455
1529
+
Arg
TCT
[ENA]
¢þ
>WENV182424105
OIHD01000736
[OIHD] human gut metagenome; human gut
1486
1569
+
Tyr
GTA
[ENA]
¢þ
>WENV182424111
OIHD01001040
[OIHD] human gut metagenome; human gut
1599
1673
+
Thr
TGT
[ENA]
¢þ
>WENV182424100
OIHD01000654
[OIHD] human gut metagenome; human gut
1652
1578
-
His
GTG
[ENA]
¢þ
>WENV182424106
OIHD01000736
[OIHD] human gut metagenome; human gut
1660
1732
+
Thr
GGT
[ENA]
¢þ
>WENV182424112
OIHD01001040
[OIHD] human gut metagenome; human gut
1747
1830
+
Tyr
GTA
[ENA]
¢þ
>WENV182424110
OIHD01000858
[OIHD] human gut metagenome; human gut
1751
1675
-
Met
CAT
[ENA]
¢þ
>WENV182424107
OIHD01000739
[OIHD] human gut metagenome; human gut
2057
1969
-
Ser
GGA
[ENA]
¢þ
>WENV182424097
OIHD01000481
[OIHD] human gut metagenome; human gut
2318
2405
+
Ser
GCT
[ENA]
¢þ
>WENV182424098
OIHD01000481
[OIHD] human gut metagenome; human gut
2483
2555
+
Glu
CTC
[ENA]
¢þ
>WENV182424093
OIHD01000171
[OIHD] human gut metagenome; human gut
2620
2705
+
Ser
TGA
[ENA]
¢þ
>WENV182424085
OIHD01000065
[OIHD] human gut metagenome; human gut
2703
2779
+
Pro
CGG
[ENA]
¢þ
>WENV182424087
OIHD01000076
[OIHD] human gut metagenome; human gut
2836
2762
-
Ala
TGC
[ENA]
¢þ
>WENV182424086
OIHD01000076
[OIHD] human gut metagenome; human gut
2941
2865
-
Ile
GAT
[ENA]
¢þ
>WENV182424084
OIHD01000054
[OIHD] human gut metagenome; human gut
3396
3321
-
Glu
TTC
[ENA]
¢þ
>WENV182424092
OIHD01000169
[OIHD] human gut metagenome; human gut
3401
3483
+
Leu
TAG
[ENA]
¢þ
>WENV182424082
OIHD01000007
[OIHD] human gut metagenome; human gut
3419
3490
+
Gln
TTG
[ENA]
¢þ
>WENV182424083
OIHD01000040
[OIHD] human gut metagenome; human gut
3832
3759
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK