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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIHR] human gut metagenome; human gut
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182426774
OIHR01004116
[OIHR] human gut metagenome; human gut
9
85
+
Arg
CCT
[ENA]
¢þ
>WENV182426778
OIHR01005032
[OIHR] human gut metagenome; human gut
40
113
+
Lys
CTT
[ENA]
¢þ
>WENV182426780
OIHR01005796
[OIHR] human gut metagenome; human gut
59
134
+
Val
TAC
[ENA]
¢þ
>WENV182426784
OIHR01006110
[OIHR] human gut metagenome; human gut
88
14
-
Lys
CTT
[ENA]
¢þ
>WENV182426785
OIHR01006296
[OIHR] human gut metagenome; human gut
92
164
+
Arg
TCT
[ENA]
¢þ
>WENV182426724
OIHR01000043
[OIHR] human gut metagenome; human gut
122
198
+
Ile
GAT
[ENA]
¢þ
>WENV182426766
OIHR01001733
[OIHR] human gut metagenome; human gut
134
50
-
Ser
GGA
[ENA]
¢þ
>WENV182426781
OIHR01005796
[OIHR] human gut metagenome; human gut
141
218
+
Asp
GTC
[ENA]
¢þ
>WENV182426772
OIHR01003678
[OIHR] human gut metagenome; human gut
162
76
-
Leu
GAG
[ENA]
¢þ
>WENV182426792
OIHR01008361
[OIHR] human gut metagenome; human gut
165
81
-
Tyr
GTA
[ENA]
¢þ
>WENV182426760
OIHR01001539
[OIHR] human gut metagenome; human gut
166
241
+
Glu
TTC
[ENA]
¢þ
>WENV182426782
OIHR01006072
[OIHR] human gut metagenome; human gut
169
85
-
Leu
CAG
[ENA]
¢þ
>WENV182426776
OIHR01004448
[OIHR] human gut metagenome; human gut
179
103
-
Arg
ACG
[ENA]
¢þ
>WENV182426783
OIHR01006110
[OIHR] human gut metagenome; human gut
189
114
-
Lys
TTT
[ENA]
¢þ
>WENV182426769
OIHR01002494
[OIHR] human gut metagenome; human gut
199
275
+
Arg
ACG
[ENA]
¢þ
>WENV182426788
OIHR01007553
[OIHR] human gut metagenome; human gut
218
293
+
Ala
GGC
[ENA]
¢þ
>WENV182426791
OIHR01008310
[OIHR] human gut metagenome; human gut
223
149
-
Pro
GGG
[ENA]
¢þ
>WENV182426731
OIHR01000151
[OIHR] human gut metagenome; human gut
232
304
+
Arg
CCT
[ENA]
¢þ
>WENV182426790
OIHR01007986
[OIHR] human gut metagenome; human gut
237
312
+
Asn
GTT
[ENA]
¢þ
>WENV182426725
OIHR01000043
[OIHR] human gut metagenome; human gut
241
316
+
Ala
TGC
[ENA]
¢þ
>WENV182426758
OIHR01001518
[OIHR] human gut metagenome; human gut
267
342
+
Phe
GAA
[ENA]
¢þ
>WENV182426789
OIHR01007970
[OIHR] human gut metagenome; human gut
269
198
-
Cys
GCA
[ENA]
¢þ
>WENV182426775
OIHR01004448
[OIHR] human gut metagenome; human gut
275
183
-
Ser
GCT
[ENA]
¢þ
>WENV182426771
OIHR01002833
[OIHR] human gut metagenome; human gut
342
415
+
Lys
TTT
[ENA]
¢þ
>WENV182426777
OIHR01004843
[OIHR] human gut metagenome; human gut
347
272
-
Ala
GGC
[ENA]
¢þ
>WENV182426755
OIHR01001088
[OIHR] human gut metagenome; human gut
357
431
+
Asn
GTT
[ENA]
¢þ
>WENV182426779
OIHR01005387
[OIHR] human gut metagenome; human gut
382
307
-
His
GTG
[ENA]
¢þ
>WENV182426733
OIHR01000167
[OIHR] human gut metagenome; human gut
425
496
+
Gln
TTG
[ENA]
¢þ
>WENV182426756
OIHR01001088
[OIHR] human gut metagenome; human gut
437
512
+
Thr
TGT
[ENA]
¢þ
>WENV182426787
OIHR01006897
[OIHR] human gut metagenome; human gut
438
350
-
Ser
TGA
[ENA]
¢þ
>WENV182426765
OIHR01001633
[OIHR] human gut metagenome; human gut
496
423
-
Cys
GCA
[ENA]
¢þ
>WENV182426770
OIHR01002758
[OIHR] human gut metagenome; human gut
500
584
+
Leu
CAA
[ENA]
¢þ
>WENV182426786
OIHR01006461
[OIHR] human gut metagenome; human gut
503
575
+
Gly
GCC
[ENA]
¢þ
>WENV182426757
OIHR01001137
[OIHR] human gut metagenome; human gut
538
608
+
Gly
TCC
[ENA]
¢þ
>WENV182426764
OIHR01001633
[OIHR] human gut metagenome; human gut
587
512
-
Phe
GAA
[ENA]
¢þ
>WENV182426773
OIHR01004068
[OIHR] human gut metagenome; human gut
655
581
-
Asp
GTC
[ENA]
¢þ
>WENV182426763
OIHR01001633
[OIHR] human gut metagenome; human gut
689
606
-
Ser
TGA
[ENA]
¢þ
>WENV182426762
OIHR01001633
[OIHR] human gut metagenome; human gut
766
692
-
Glu
TTC
[ENA]
¢þ
>WENV182426754
OIHR01001076
[OIHR] human gut metagenome; human gut
787
715
-
Glu
CTC
[ENA]
¢þ
>WENV182426748
OIHR01000789
[OIHR] human gut metagenome; human gut
801
725
-
Val
TAC
[ENA]
¢þ
>WENV182426759
OIHR01001530
[OIHR] human gut metagenome; human gut
820
748
-
Trp
CCA
[ENA]
¢þ
>WENV182426768
OIHR01002445
[OIHR] human gut metagenome; human gut
827
733
-
SeC
TCA
[ENA]
¢þ
>WENV182426749
OIHR01001019
[OIHR] human gut metagenome; human gut
842
914
+
Glu
TTC
[ENA]
¢þ
>WENV182426767
OIHR01001897
[OIHR] human gut metagenome; human gut
863
789
-
Gln
TTG
[ENA]
¢þ
>WENV182426761
OIHR01001633
[OIHR] human gut metagenome; human gut
864
788
-
Ile2
CAT
[ENA]
¢þ
>WENV182426745
OIHR01000400
[OIHR] human gut metagenome; human gut
891
809
-
Arg
GCG
[ENA]
¢þ
>WENV182426747
OIHR01000513
[OIHR] human gut metagenome; human gut
932
844
-
Ser
GGA
[ENA]
¢þ
>WENV182426750
OIHR01001040
[OIHR] human gut metagenome; human gut
945
1020
+
Thr
TGT
[ENA]
¢þ
>WENV182426746
OIHR01000405
[OIHR] human gut metagenome; human gut
958
884
-
Asn
GTT
[ENA]
¢þ
>WENV182426744
OIHR01000258
[OIHR] human gut metagenome; human gut
996
1072
+
Arg
CCT
[ENA]
¢þ
>WENV182426751
OIHR01001040
[OIHR] human gut metagenome; human gut
1056
1140
+
Tyr
GTA
[ENA]
¢þ
>WENV182426723
OIHR01000018
[OIHR] human gut metagenome; human gut
1094
1019
-
Asn
GTT
[ENA]
¢þ
>WENV182426752
OIHR01001040
[OIHR] human gut metagenome; human gut
1185
1259
+
Gly
TCC
[ENA]
¢þ
>WENV182426753
OIHR01001040
[OIHR] human gut metagenome; human gut
1263
1338
+
Thr
GGT
[ENA]
¢þ
>WENV182426728
OIHR01000102
[OIHR] human gut metagenome; human gut
1408
1333
-
Trp
CCA
[ENA]
¢þ
>WENV182426740
OIHR01000214
[OIHR] human gut metagenome; human gut
1421
1339
-
Leu
TAG
[ENA]
¢þ
>WENV182426739
OIHR01000214
[OIHR] human gut metagenome; human gut
1542
1470
-
Lys
TTT
[ENA]
¢þ
>WENV182426741
OIHR01000227
[OIHR] human gut metagenome; human gut
1546
1620
+
Thr
TGT
[ENA]
¢þ
>WENV182426738
OIHR01000214
[OIHR] human gut metagenome; human gut
1651
1577
-
Phe
GAA
[ENA]
¢þ
>WENV182426742
OIHR01000227
[OIHR] human gut metagenome; human gut
1663
1746
+
Tyr
GTA
[ENA]
¢þ
>WENV182426737
OIHR01000214
[OIHR] human gut metagenome; human gut
1745
1670
-
fMet
CAT
[ENA]
¢þ
>WENV182426736
OIHR01000214
[OIHR] human gut metagenome; human gut
1842
1770
-
Thr
TGT
[ENA]
¢þ
>WENV182426743
OIHR01000227
[OIHR] human gut metagenome; human gut
1864
1936
+
Thr
GGT
[ENA]
¢þ
>WENV182426730
OIHR01000122
[OIHR] human gut metagenome; human gut
1870
1943
+
Phe
GAA
[ENA]
¢þ
>WENV182426732
OIHR01000155
[OIHR] human gut metagenome; human gut
1897
1971
+
Ile2
CAT
[ENA]
¢þ
>WENV182426735
OIHR01000214
[OIHR] human gut metagenome; human gut
1953
1872
-
Tyr
GTA
[ENA]
¢þ
>WENV182426734
OIHR01000214
[OIHR] human gut metagenome; human gut
2038
1965
-
Val
TAC
[ENA]
¢þ
>WENV182426727
OIHR01000074
[OIHR] human gut metagenome; human gut
2261
2176
-
Ser
TGA
[ENA]
¢þ
>WENV182426721
OIHR01000001
[OIHR] human gut metagenome; human gut
2454
2528
+
Ile
GAT
[ENA]
¢þ
>WENV182426722
OIHR01000001
[OIHR] human gut metagenome; human gut
2545
2619
+
Ala
TGC
[ENA]
¢þ
>WENV182426729
OIHR01000106
[OIHR] human gut metagenome; human gut
2689
2603
-
Leu
CAA
[ENA]
¢þ
>WENV182426726
OIHR01000043
[OIHR] human gut metagenome; human gut
3668
3744
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK