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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIIO] human gut metagenome; human gut
HIT:
136 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182432522
OIIO01001903
[OIIO] human gut metagenome; human gut
2
78
+
Asn
GTT
[ENA]
¢þ
>WENV182432531
OIIO01003096
[OIIO] human gut metagenome; human gut
46
128
+
Leu
TAG
[ENA]
¢þ
>WENV182432514
OIIO01001593
[OIIO] human gut metagenome; human gut
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV182432561
OIIO01006863
[OIIO] human gut metagenome; human gut
66
139
+
Ala
TGC
[ENA]
¢þ
>WENV182432494
OIIO01000850
[OIIO] human gut metagenome; human gut
67
161
+
SeC
TCA
[ENA]
¢þ
>WENV182432487
OIIO01000302
[OIIO] human gut metagenome; human gut
78
2
-
Arg
CCG
[ENA]
¢þ
>WENV182432479
OIIO01000161
[OIIO] human gut metagenome; human gut
87
11
-
Arg
ACG
[ENA]
¢þ
>WENV182432538
OIIO01003542
[OIIO] human gut metagenome; human gut
127
37
-
Ser
GGA
[ENA]
¢þ
>WENV182432442
OIIO01000012
[OIIO] human gut metagenome; human gut
128
43
-
Ser
TGA
[ENA]
¢þ
>WENV182432559
OIIO01006003
[OIIO] human gut metagenome; human gut
144
226
+
Leu
GAG
[ENA]
¢þ
>WENV182432530
OIIO01002805
[OIIO] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182432518
OIIO01001771
[OIIO] human gut metagenome; human gut
167
92
-
Phe
GAA
[ENA]
¢þ
>WENV182432525
OIIO01002434
[OIIO] human gut metagenome; human gut
170
96
-
Glu
CTC
[ENA]
¢þ
>WENV182432558
OIIO01005880
[OIIO] human gut metagenome; human gut
202
127
-
Ile2
CAT
[ENA]
¢þ
>WENV182432513
OIIO01001564
[OIIO] human gut metagenome; human gut
206
122
-
Leu
CAA
[ENA]
¢þ
>WENV182432501
OIIO01000950
[OIIO] human gut metagenome; human gut
211
138
-
Ile2
CAT
[ENA]
¢þ
>WENV182432524
OIIO01002258
[OIIO] human gut metagenome; human gut
216
140
-
Arg
TCT
[ENA]
¢þ
>WENV182432537
OIIO01003542
[OIIO] human gut metagenome; human gut
222
135
-
Ser
TGA
[ENA]
¢þ
>WENV182432527
OIIO01002777
[OIIO] human gut metagenome; human gut
230
306
+
Pro
TGG
[ENA]
¢þ
>WENV182432554
OIIO01005144
[OIIO] human gut metagenome; human gut
246
172
-
Lys
TTT
[ENA]
¢þ
>WENV182432483
OIIO01000220
[OIIO] human gut metagenome; human gut
279
207
-
Glu
CTC
[ENA]
¢þ
>WENV182432563
OIIO01007215
[OIIO] human gut metagenome; human gut
285
368
+
Leu
TAA
[ENA]
¢þ
>WENV182432468
OIIO01000070
[OIIO] human gut metagenome; human gut
292
218
-
Met
CAT
[ENA]
¢þ
>WENV182432567
OIIO01008341
[OIIO] human gut metagenome; human gut
312
388
+
Met
CAT
[ENA]
¢þ
>WENV182432528
OIIO01002777
[OIIO] human gut metagenome; human gut
313
383
+
Gly
TCC
[ENA]
¢þ
>WENV182432555
OIIO01005291
[OIIO] human gut metagenome; human gut
314
240
-
Thr
TGT
[ENA]
¢þ
>WENV182432564
OIIO01007253
[OIIO] human gut metagenome; human gut
346
420
+
Thr
GGT
[ENA]
¢þ
>WENV182432562
OIIO01006890
[OIIO] human gut metagenome; human gut
360
447
+
Ser
GCT
[ENA]
¢þ
>WENV182432556
OIIO01005546
[OIIO] human gut metagenome; human gut
390
318
-
Trp
CCA
[ENA]
¢þ
>WENV182432568
OIIO01008341
[OIIO] human gut metagenome; human gut
399
483
+
Leu
TAG
[ENA]
¢þ
>WENV182432519
OIIO01001856
[OIIO] human gut metagenome; human gut
410
483
+
Asp
GTC
[ENA]
¢þ
>WENV182432504
OIIO01001067
[OIIO] human gut metagenome; human gut
415
502
+
Ser
GGA
[ENA]
¢þ
>WENV182432565
OIIO01007460
[OIIO] human gut metagenome; human gut
419
492
+
Gln
TTG
[ENA]
¢þ
>WENV182432560
OIIO01006003
[OIIO] human gut metagenome; human gut
421
340
-
Leu
TAG
[ENA]
¢þ
>WENV182432548
OIIO01004422
[OIIO] human gut metagenome; human gut
426
337
-
Ser
CGA
[ENA]
¢þ
>WENV182432467
OIIO01000070
[OIIO] human gut metagenome; human gut
428
354
-
Met
CAT
[ENA]
¢þ
>WENV182432566
OIIO01007788
[OIIO] human gut metagenome; human gut
445
521
+
Arg
CCT
[ENA]
¢þ
>WENV182432547
OIIO01004277
[OIIO] human gut metagenome; human gut
459
386
-
Phe
GAA
[ENA]
¢þ
>WENV182432551
OIIO01004441
[OIIO] human gut metagenome; human gut
493
407
-
Leu
TAA
[ENA]
¢þ
>WENV182432541
OIIO01003727
[OIIO] human gut metagenome; human gut
509
596
+
Ser
TGA
[ENA]
¢þ
>WENV182432520
OIIO01001856
[OIIO] human gut metagenome; human gut
511
598
+
Leu
TAA
[ENA]
¢þ
>WENV182432488
OIIO01000320
[OIIO] human gut metagenome; human gut
537
462
-
Ala
GGC
[ENA]
¢þ
>WENV182432489
OIIO01000332
[OIIO] human gut metagenome; human gut
548
621
+
Glu
CTC
[ENA]
¢þ
>WENV182432546
OIIO01004277
[OIIO] human gut metagenome; human gut
556
482
-
fMet
CAT
[ENA]
¢þ
>WENV182432532
OIIO01003230
[OIIO] human gut metagenome; human gut
576
651
+
Arg
TCT
[ENA]
¢þ
>WENV182432550
OIIO01004441
[OIIO] human gut metagenome; human gut
579
506
-
Cys
GCA
[ENA]
¢þ
>WENV182432552
OIIO01005049
[OIIO] human gut metagenome; human gut
584
660
+
Pro
GGG
[ENA]
¢þ
>WENV182432557
OIIO01005799
[OIIO] human gut metagenome; human gut
597
513
-
Leu
CAG
[ENA]
¢þ
>WENV182432543
OIIO01004209
[OIIO] human gut metagenome; human gut
606
693
+
Ser
GCT
[ENA]
¢þ
>WENV182432542
OIIO01004105
[OIIO] human gut metagenome; human gut
616
690
+
Arg
CCT
[ENA]
¢þ
>WENV182432553
OIIO01005076
[OIIO] human gut metagenome; human gut
644
571
-
Ala
CGC
[ENA]
¢þ
>WENV182432545
OIIO01004277
[OIIO] human gut metagenome; human gut
658
584
-
Thr
TGT
[ENA]
¢þ
>WENV182432533
OIIO01003230
[OIIO] human gut metagenome; human gut
660
734
+
His
GTG
[ENA]
¢þ
>WENV182432526
OIIO01002551
[OIIO] human gut metagenome; human gut
667
589
-
Arg
CCT
[ENA]
¢þ
>WENV182432536
OIIO01003263
[OIIO] human gut metagenome; human gut
682
608
-
Gln
CTG
[ENA]
¢þ
>WENV182432516
OIIO01001760
[OIIO] human gut metagenome; human gut
685
760
+
Thr
CGT
[ENA]
¢þ
>WENV182432549
OIIO01004441
[OIIO] human gut metagenome; human gut
708
633
-
Gly
GCC
[ENA]
¢þ
>WENV182432544
OIIO01004277
[OIIO] human gut metagenome; human gut
758
675
-
Tyr
GTA
[ENA]
¢þ
>WENV182432540
OIIO01003612
[OIIO] human gut metagenome; human gut
764
688
-
Pro
TGG
[ENA]
¢þ
>WENV182432529
OIIO01002782
[OIIO] human gut metagenome; human gut
800
715
-
Leu
CAA
[ENA]
¢þ
>WENV182432517
OIIO01001762
[OIIO] human gut metagenome; human gut
802
875
+
Lys
TTT
[ENA]
¢þ
>WENV182432535
OIIO01003263
[OIIO] human gut metagenome; human gut
810
735
-
His
GTG
[ENA]
¢þ
>WENV182432503
OIIO01001061
[OIIO] human gut metagenome; human gut
828
754
-
Gly
TCC
[ENA]
¢þ
>WENV182432534
OIIO01003263
[OIIO] human gut metagenome; human gut
889
814
-
Arg
TCT
[ENA]
¢þ
>WENV182432505
OIIO01001165
[OIIO] human gut metagenome; human gut
891
816
-
Gly
CCC
[ENA]
¢þ
>WENV182432539
OIIO01003612
[OIIO] human gut metagenome; human gut
893
807
-
Leu
CAG
[ENA]
¢þ
>WENV182432515
OIIO01001697
[OIIO] human gut metagenome; human gut
1056
965
-
Ser
GGA
[ENA]
¢þ
>WENV182432521
OIIO01001865
[OIIO] human gut metagenome; human gut
1108
1034
-
Arg
ACG
[ENA]
¢þ
>WENV182432496
OIIO01000881
[OIIO] human gut metagenome; human gut
1174
1102
-
Cys
GCA
[ENA]
¢þ
>WENV182432523
OIIO01001976
[OIIO] human gut metagenome; human gut
1226
1151
-
Lys
TTT
[ENA]
¢þ
>WENV182432506
OIIO01001240
[OIIO] human gut metagenome; human gut
1256
1341
+
Tyr
GTA
[ENA]
¢þ
>WENV182432498
OIIO01000914
[OIIO] human gut metagenome; human gut
1282
1207
-
Pro
CGG
[ENA]
¢þ
>WENV182432511
OIIO01001373
[OIIO] human gut metagenome; human gut
1286
1362
+
Ile
GAT
[ENA]
¢þ
>WENV182432495
OIIO01000881
[OIIO] human gut metagenome; human gut
1288
1217
-
Glu
TTC
[ENA]
¢þ
>WENV182432508
OIIO01001253
[OIIO] human gut metagenome; human gut
1306
1231
-
Trp
CCA
[ENA]
¢þ
>WENV182432497
OIIO01000914
[OIIO] human gut metagenome; human gut
1389
1316
-
Gln
CTG
[ENA]
¢þ
>WENV182432507
OIIO01001253
[OIIO] human gut metagenome; human gut
1391
1315
-
Asp
GTC
[ENA]
¢þ
>WENV182432512
OIIO01001373
[OIIO] human gut metagenome; human gut
1405
1480
+
Ala
TGC
[ENA]
¢þ
>WENV182432481
OIIO01000183
[OIIO] human gut metagenome; human gut
1414
1488
+
Arg
CCT
[ENA]
¢þ
>WENV182432491
OIIO01000436
[OIIO] human gut metagenome; human gut
1429
1500
+
Gln
TTG
[ENA]
¢þ
>WENV182432510
OIIO01001297
[OIIO] human gut metagenome; human gut
1473
1400
-
Ala
TGC
[ENA]
¢þ
>WENV182432484
OIIO01000277
[OIIO] human gut metagenome; human gut
1523
1597
+
Ile
GAT
[ENA]
¢þ
>WENV182432509
OIIO01001297
[OIIO] human gut metagenome; human gut
1555
1480
-
Ile
GAT
[ENA]
¢þ
>WENV182432485
OIIO01000277
[OIIO] human gut metagenome; human gut
1614
1688
+
Ala
TGC
[ENA]
¢þ
>WENV182432502
OIIO01001032
[OIIO] human gut metagenome; human gut
1799
1874
+
Ile2
CAT
[ENA]
¢þ
>WENV182432500
OIIO01000940
[OIIO] human gut metagenome; human gut
1891
1817
-
Glu
TTC
[ENA]
¢þ
>WENV182432499
OIIO01000940
[OIIO] human gut metagenome; human gut
2059
1983
-
Met
CAT
[ENA]
¢þ
>WENV182432493
OIIO01000568
[OIIO] human gut metagenome; human gut
2560
2487
-
Ile2
CAT
[ENA]
¢þ
>WENV182432490
OIIO01000379
[OIIO] human gut metagenome; human gut
2565
2490
-
Pro
TGG
[ENA]
¢þ
>WENV182432472
OIIO01000085
[OIIO] human gut metagenome; human gut
2586
2513
-
Gly
CCC
[ENA]
¢þ
>WENV182432492
OIIO01000472
[OIIO] human gut metagenome; human gut
2753
2828
+
Trp
CCA
[ENA]
¢þ
>WENV182432482
OIIO01000191
[OIIO] human gut metagenome; human gut
3296
3220
-
fMet
CAT
[ENA]
¢þ
>WENV182432486
OIIO01000298
[OIIO] human gut metagenome; human gut
4169
4245
+
Val
CAC
[ENA]
¢þ
>WENV182432480
OIIO01000163
[OIIO] human gut metagenome; human gut
5574
5495
-
Leu
CAA
[ENA]
¢þ
>WENV182432475
OIIO01000095
[OIIO] human gut metagenome; human gut
7096
7003
-
Ser
GCT
[ENA]
¢þ
>WENV182432474
OIIO01000095
[OIIO] human gut metagenome; human gut
7217
7130
-
Ser
TGA
[ENA]
¢þ
>WENV182432473
OIIO01000088
[OIIO] human gut metagenome; human gut
7606
7681
+
His
GTG
[ENA]
¢þ
>WENV182432462
OIIO01000041
[OIIO] human gut metagenome; human gut
8043
7972
-
Gln
CTG
[ENA]
¢þ
>WENV182432466
OIIO01000059
[OIIO] human gut metagenome; human gut
8354
8442
+
Ser
GGA
[ENA]
¢þ
>WENV182432471
OIIO01000082
[OIIO] human gut metagenome; human gut
8928
9016
+
Ser
GGA
[ENA]
¢þ
>WENV182432477
OIIO01000107
[OIIO] human gut metagenome; human gut
9025
8940
-
Ser
TGA
[ENA]
¢þ
>WENV182432469
OIIO01000079
[OIIO] human gut metagenome; human gut
9895
9970
+
Phe
GAA
[ENA]
¢þ
>WENV182432459
OIIO01000033
[OIIO] human gut metagenome; human gut
11331
11258
-
Trp
CCA
[ENA]
¢þ
>WENV182432478
OIIO01000111
[OIIO] human gut metagenome; human gut
12267
12341
+
Asp
GTC
[ENA]
¢þ
>WENV182432458
OIIO01000033
[OIIO] human gut metagenome; human gut
12696
12624
-
Thr
GGT
[ENA]
¢þ
>WENV182432457
OIIO01000033
[OIIO] human gut metagenome; human gut
12897
12814
-
Tyr
GTA
[ENA]
¢þ
>WENV182432456
OIIO01000033
[OIIO] human gut metagenome; human gut
13014
12940
-
Thr
TGT
[ENA]
¢þ
>WENV182432444
OIIO01000014
[OIIO] human gut metagenome; human gut
13258
13176
-
Leu
TAG
[ENA]
¢þ
>WENV182432441
OIIO01000012
[OIIO] human gut metagenome; human gut
13750
13823
+
Trp
CCA
[ENA]
¢þ
>WENV182432476
OIIO01000100
[OIIO] human gut metagenome; human gut
15512
15602
+
Ser
CGA
[ENA]
¢þ
>WENV182432452
OIIO01000027
[OIIO] human gut metagenome; human gut
15579
15504
-
Lys
TTT
[ENA]
¢þ
>WENV182432470
OIIO01000081
[OIIO] human gut metagenome; human gut
21219
21293
+
Arg
TCT
[ENA]
¢þ
>WENV182432460
OIIO01000036
[OIIO] human gut metagenome; human gut
22652
22723
+
Gln
TTG
[ENA]
¢þ
>WENV182432463
OIIO01000046
[OIIO] human gut metagenome; human gut
24940
24865
-
Pro
TGG
[ENA]
¢þ
>WENV182432443
OIIO01000013
[OIIO] human gut metagenome; human gut
25807
25879
+
Arg
CCT
[ENA]
¢þ
>WENV182432454
OIIO01000033
[OIIO] human gut metagenome; human gut
26121
26195
+
Asn
GTT
[ENA]
¢þ
>WENV182432455
OIIO01000033
[OIIO] human gut metagenome; human gut
26220
26294
+
Asn
GTT
[ENA]
¢þ
>WENV182432446
OIIO01000015
[OIIO] human gut metagenome; human gut
26480
26406
-
Thr
TGT
[ENA]
¢þ
>WENV182432465
OIIO01000057
[OIIO] human gut metagenome; human gut
29732
29806
+
Cys
GCA
[ENA]
¢þ
>WENV182432464
OIIO01000047
[OIIO] human gut metagenome; human gut
38671
38744
+
fMet
CAT
[ENA]
¢þ
>WENV182432445
OIIO01000015
[OIIO] human gut metagenome; human gut
41136
41219
+
Tyr
GTA
[ENA]
¢þ
>WENV182432433
OIIO01000003
[OIIO] human gut metagenome; human gut
41408
41481
+
Lys
CTT
[ENA]
¢þ
>WENV182432434
OIIO01000003
[OIIO] human gut metagenome; human gut
41505
41578
+
Lys
CTT
[ENA]
¢þ
>WENV182432435
OIIO01000003
[OIIO] human gut metagenome; human gut
41598
41671
+
Lys
CTT
[ENA]
¢þ
>WENV182432450
OIIO01000025
[OIIO] human gut metagenome; human gut
42733
42659
-
Glu
TTC
[ENA]
¢þ
>WENV182432461
OIIO01000041
[OIIO] human gut metagenome; human gut
42868
42943
+
Pro
GGG
[ENA]
¢þ
>WENV182432453
OIIO01000030
[OIIO] human gut metagenome; human gut
54173
54101
-
Glu
TTC
[ENA]
¢þ
>WENV182432451
OIIO01000026
[OIIO] human gut metagenome; human gut
60443
60518
+
Val
TAC
[ENA]
¢þ
>WENV182432449
OIIO01000024
[OIIO] human gut metagenome; human gut
61373
61299
-
Glu
CTC
[ENA]
¢þ
>WENV182432448
OIIO01000023
[OIIO] human gut metagenome; human gut
61786
61859
+
Lys
TTT
[ENA]
¢þ
>WENV182432440
OIIO01000011
[OIIO] human gut metagenome; human gut
72801
72727
-
Ile2
CAT
[ENA]
¢þ
>WENV182432447
OIIO01000017
[OIIO] human gut metagenome; human gut
75981
75908
-
Thr
CGT
[ENA]
¢þ
>WENV182432436
OIIO01000003
[OIIO] human gut metagenome; human gut
84931
84857
-
Ala
GGC
[ENA]
¢þ
>WENV182432437
OIIO01000006
[OIIO] human gut metagenome; human gut
89050
88978
-
Arg
CCG
[ENA]
¢þ
>WENV182432439
OIIO01000009
[OIIO] human gut metagenome; human gut
100590
100515
-
Phe
GAA
[ENA]
¢þ
>WENV182432438
OIIO01000009
[OIIO] human gut metagenome; human gut
100771
100844
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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