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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIIZ] human gut metagenome; human gut
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182434742
OIIZ01002592
[OIIZ] human gut metagenome; human gut
31
103
+
Thr
GGT
[ENA]
¢þ
>WENV182434728
OIIZ01001999
[OIIZ] human gut metagenome; human gut
51
140
+
Ser
GCT
[ENA]
¢þ
>WENV182434753
OIIZ01003422
[OIIZ] human gut metagenome; human gut
54
129
+
Gly
TCC
[ENA]
¢þ
>WENV182434743
OIIZ01002597
[OIIZ] human gut metagenome; human gut
54
144
+
Leu
TAA
[ENA]
¢þ
>WENV182434773
OIIZ01005892
[OIIZ] human gut metagenome; human gut
61
132
+
Glu
TTC
[ENA]
¢þ
>WENV182434698
OIIZ01000137
[OIIZ] human gut metagenome; human gut
74
-1
-
fMet
CAT
[ENA]
¢þ
>WENV182434775
OIIZ01006132
[OIIZ] human gut metagenome; human gut
81
156
+
Thr
TGT
[ENA]
¢þ
>WENV182434757
OIIZ01003542
[OIIZ] human gut metagenome; human gut
107
182
+
His
GTG
[ENA]
¢þ
>WENV182434726
OIIZ01001873
[OIIZ] human gut metagenome; human gut
133
215
+
Leu
TAG
[ENA]
¢þ
>WENV182434754
OIIZ01003422
[OIIZ] human gut metagenome; human gut
138
213
+
Lys
CTT
[ENA]
¢þ
>WENV182434770
OIIZ01005313
[OIIZ] human gut metagenome; human gut
138
222
+
Tyr
GTA
[ENA]
¢þ
>WENV182434719
OIIZ01001051
[OIIZ] human gut metagenome; human gut
151
224
+
Gly
CCC
[ENA]
¢þ
>WENV182434752
OIIZ01003288
[OIIZ] human gut metagenome; human gut
156
82
-
Asp
GTC
[ENA]
¢þ
>WENV182434701
OIIZ01000222
[OIIZ] human gut metagenome; human gut
158
86
-
Cys
GCA
[ENA]
¢þ
>WENV182434729
OIIZ01002074
[OIIZ] human gut metagenome; human gut
161
232
+
Gln
CTG
[ENA]
¢þ
>WENV182434727
OIIZ01001947
[OIIZ] human gut metagenome; human gut
166
91
-
Val
TAC
[ENA]
¢þ
>WENV182434776
OIIZ01006132
[OIIZ] human gut metagenome; human gut
172
258
+
Leu
CAG
[ENA]
¢þ
>WENV182434774
OIIZ01005892
[OIIZ] human gut metagenome; human gut
175
247
+
Cys
GCA
[ENA]
¢þ
>WENV182434708
OIIZ01000595
[OIIZ] human gut metagenome; human gut
182
256
+
Ile
GAT
[ENA]
¢þ
>WENV182434720
OIIZ01001055
[OIIZ] human gut metagenome; human gut
203
128
-
Gly
CCC
[ENA]
¢þ
>WENV182434762
OIIZ01004294
[OIIZ] human gut metagenome; human gut
204
279
+
Val
TAC
[ENA]
¢þ
>WENV182434755
OIIZ01003422
[OIIZ] human gut metagenome; human gut
221
295
+
Glu
TTC
[ENA]
¢þ
>WENV182434744
OIIZ01002719
[OIIZ] human gut metagenome; human gut
231
157
-
Arg
TCT
[ENA]
¢þ
>WENV182434771
OIIZ01005750
[OIIZ] human gut metagenome; human gut
252
176
-
Ile2
CAT
[ENA]
¢þ
>WENV182434759
OIIZ01003967
[OIIZ] human gut metagenome; human gut
254
178
-
Pro
GGG
[ENA]
¢þ
>WENV182434758
OIIZ01003834
[OIIZ] human gut metagenome; human gut
265
338
+
Pro
CGG
[ENA]
¢þ
>WENV182434709
OIIZ01000595
[OIIZ] human gut metagenome; human gut
273
347
+
Ala
TGC
[ENA]
¢þ
>WENV182434735
OIIZ01002215
[OIIZ] human gut metagenome; human gut
281
355
+
Arg
CCG
[ENA]
¢þ
>WENV182434710
OIIZ01000681
[OIIZ] human gut metagenome; human gut
287
370
+
Tyr
GTA
[ENA]
¢þ
>WENV182434760
OIIZ01003992
[OIIZ] human gut metagenome; human gut
295
209
-
Leu
TAG
[ENA]
¢þ
>WENV182434761
OIIZ01004199
[OIIZ] human gut metagenome; human gut
296
220
-
Val
GAC
[ENA]
¢þ
>WENV182434748
OIIZ01003011
[OIIZ] human gut metagenome; human gut
297
226
-
Gln
TTG
[ENA]
¢þ
>WENV182434749
OIIZ01003110
[OIIZ] human gut metagenome; human gut
310
228
-
Leu
CAA
[ENA]
¢þ
>WENV182434756
OIIZ01003422
[OIIZ] human gut metagenome; human gut
313
397
+
Tyr
GTA
[ENA]
¢þ
>WENV182434768
OIIZ01004872
[OIIZ] human gut metagenome; human gut
354
267
-
Ser
TGA
[ENA]
¢þ
>WENV182434741
OIIZ01002557
[OIIZ] human gut metagenome; human gut
400
474
+
Pro
GGG
[ENA]
¢þ
>WENV182434772
OIIZ01005754
[OIIZ] human gut metagenome; human gut
408
321
-
Ser
TGA
[ENA]
¢þ
>WENV182434734
OIIZ01002165
[OIIZ] human gut metagenome; human gut
410
335
-
Glu
TTC
[ENA]
¢þ
>WENV182434778
OIIZ01006375
[OIIZ] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182434730
OIIZ01002074
[OIIZ] human gut metagenome; human gut
432
503
+
Gln
TTG
[ENA]
¢þ
>WENV182434777
OIIZ01006137
[OIIZ] human gut metagenome; human gut
450
524
+
Arg
CCG
[ENA]
¢þ
>WENV182434763
OIIZ01004294
[OIIZ] human gut metagenome; human gut
452
525
+
Cys
GCA
[ENA]
¢þ
>WENV182434764
OIIZ01004315
[OIIZ] human gut metagenome; human gut
462
537
+
Val
GAC
[ENA]
¢þ
>WENV182434711
OIIZ01000681
[OIIZ] human gut metagenome; human gut
468
540
+
Thr
GGT
[ENA]
¢þ
>WENV182434780
OIIZ01007068
[OIIZ] human gut metagenome; human gut
490
397
-
Ser
GCT
[ENA]
¢þ
>WENV182434716
OIIZ01000862
[OIIZ] human gut metagenome; human gut
490
417
-
Phe
GAA
[ENA]
¢þ
>WENV182434733
OIIZ01002165
[OIIZ] human gut metagenome; human gut
494
419
-
Ala
GGC
[ENA]
¢þ
>WENV182434769
OIIZ01005119
[OIIZ] human gut metagenome; human gut
505
577
+
Arg
CCT
[ENA]
¢þ
>WENV182434739
OIIZ01002415
[OIIZ] human gut metagenome; human gut
513
441
-
Glu
TTC
[ENA]
¢þ
>WENV182434724
OIIZ01001629
[OIIZ] human gut metagenome; human gut
518
443
-
His
GTG
[ENA]
¢þ
>WENV182434767
OIIZ01004732
[OIIZ] human gut metagenome; human gut
526
601
+
Thr
GGT
[ENA]
¢þ
>WENV182434766
OIIZ01004535
[OIIZ] human gut metagenome; human gut
527
452
-
Pro
TGG
[ENA]
¢þ
>WENV182434779
OIIZ01006891
[OIIZ] human gut metagenome; human gut
542
469
-
Lys
TTT
[ENA]
¢þ
>WENV182434738
OIIZ01002338
[OIIZ] human gut metagenome; human gut
606
677
+
Gln
TTG
[ENA]
¢þ
>WENV182434747
OIIZ01002954
[OIIZ] human gut metagenome; human gut
607
694
+
Ser
GCT
[ENA]
¢þ
>WENV182434740
OIIZ01002542
[OIIZ] human gut metagenome; human gut
619
544
-
Val
TAC
[ENA]
¢þ
>WENV182434765
OIIZ01004328
[OIIZ] human gut metagenome; human gut
643
573
-
Gly
TCC
[ENA]
¢þ
>WENV182434745
OIIZ01002926
[OIIZ] human gut metagenome; human gut
648
724
+
Pro
TGG
[ENA]
¢þ
>WENV182434731
OIIZ01002074
[OIIZ] human gut metagenome; human gut
663
736
+
His
GTG
[ENA]
¢þ
>WENV182434736
OIIZ01002276
[OIIZ] human gut metagenome; human gut
684
756
+
Arg
CCG
[ENA]
¢þ
>WENV182434702
OIIZ01000255
[OIIZ] human gut metagenome; human gut
703
787
+
Leu
CAA
[ENA]
¢þ
>WENV182434746
OIIZ01002926
[OIIZ] human gut metagenome; human gut
729
802
+
Gln
TTG
[ENA]
¢þ
>WENV182434732
OIIZ01002074
[OIIZ] human gut metagenome; human gut
741
815
+
Thr
TGT
[ENA]
¢þ
>WENV182434751
OIIZ01003150
[OIIZ] human gut metagenome; human gut
781
706
-
Thr
GGT
[ENA]
¢þ
>WENV182434721
OIIZ01001346
[OIIZ] human gut metagenome; human gut
790
863
+
Trp
CCA
[ENA]
¢þ
>WENV182434750
OIIZ01003150
[OIIZ] human gut metagenome; human gut
859
785
-
Gly
TCC
[ENA]
¢þ
>WENV182434715
OIIZ01000798
[OIIZ] human gut metagenome; human gut
878
964
+
Leu
CAG
[ENA]
¢þ
>WENV182434707
OIIZ01000506
[OIIZ] human gut metagenome; human gut
889
963
+
Ile2
CAT
[ENA]
¢þ
>WENV182434737
OIIZ01002290
[OIIZ] human gut metagenome; human gut
890
799
-
Ser
CGA
[ENA]
¢þ
>WENV182434717
OIIZ01000877
[OIIZ] human gut metagenome; human gut
902
977
+
Phe
GAA
[ENA]
¢þ
>WENV182434722
OIIZ01001402
[OIIZ] human gut metagenome; human gut
905
978
+
Lys
TTT
[ENA]
¢þ
>WENV182434713
OIIZ01000782
[OIIZ] human gut metagenome; human gut
948
1022
+
Thr
TGT
[ENA]
¢þ
>WENV182434718
OIIZ01001039
[OIIZ] human gut metagenome; human gut
1045
1118
+
Trp
CCA
[ENA]
¢þ
>WENV182434714
OIIZ01000782
[OIIZ] human gut metagenome; human gut
1065
1148
+
Tyr
GTA
[ENA]
¢þ
>WENV182434705
OIIZ01000357
[OIIZ] human gut metagenome; human gut
1110
1025
-
Leu
TAA
[ENA]
¢þ
>WENV182434723
OIIZ01001547
[OIIZ] human gut metagenome; human gut
1161
1246
+
Ser
TGA
[ENA]
¢þ
>WENV182434725
OIIZ01001841
[OIIZ] human gut metagenome; human gut
1171
1097
-
Ala
GGC
[ENA]
¢þ
>WENV182434704
OIIZ01000357
[OIIZ] human gut metagenome; human gut
1199
1126
-
Gly
GCC
[ENA]
¢þ
>WENV182434712
OIIZ01000681
[OIIZ] human gut metagenome; human gut
1853
1928
+
Trp
CCA
[ENA]
¢þ
>WENV182434692
OIIZ01000017
[OIIZ] human gut metagenome; human gut
1975
2050
+
Ala
TGC
[ENA]
¢þ
>WENV182434700
OIIZ01000180
[OIIZ] human gut metagenome; human gut
2453
2381
-
Arg
CCT
[ENA]
¢þ
>WENV182434706
OIIZ01000414
[OIIZ] human gut metagenome; human gut
2867
2952
+
Ser
TGA
[ENA]
¢þ
>WENV182434697
OIIZ01000135
[OIIZ] human gut metagenome; human gut
3193
3275
+
Leu
TAG
[ENA]
¢þ
>WENV182434703
OIIZ01000291
[OIIZ] human gut metagenome; human gut
3265
3192
-
Pro
CGG
[ENA]
¢þ
>WENV182434694
OIIZ01000057
[OIIZ] human gut metagenome; human gut
4178
4106
-
Glu
TTC
[ENA]
¢þ
>WENV182434699
OIIZ01000162
[OIIZ] human gut metagenome; human gut
4192
4266
+
Met
CAT
[ENA]
¢þ
>WENV182434693
OIIZ01000029
[OIIZ] human gut metagenome; human gut
5471
5399
-
fMet
CAT
[ENA]
¢þ
>WENV182434695
OIIZ01000066
[OIIZ] human gut metagenome; human gut
5597
5671
+
Glu
CTC
[ENA]
¢þ
>WENV182434696
OIIZ01000066
[OIIZ] human gut metagenome; human gut
5675
5750
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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