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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIJA] human gut metagenome; human gut
HIT:
88 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182434839
OIJA01003281
[OIJA] human gut metagenome; human gut
46
119
+
Ile
GAT
[ENA]
¢þ
>WENV182434866
OIJA01009070
[OIJA] human gut metagenome; human gut
70
154
+
Tyr
GTA
[ENA]
¢þ
>WENV182434827
OIJA01002622
[OIJA] human gut metagenome; human gut
81
155
+
Met
CAT
[ENA]
¢þ
>WENV182434812
OIJA01000963
[OIJA] human gut metagenome; human gut
90
161
+
Asn
GTT
[ENA]
¢þ
>WENV182434868
OIJA01009570
[OIJA] human gut metagenome; human gut
94
177
+
Leu
CAA
[ENA]
¢þ
>WENV182434845
OIJA01004029
[OIJA] human gut metagenome; human gut
96
171
+
Ala
TGC
[ENA]
¢þ
>WENV182434863
OIJA01008541
[OIJA] human gut metagenome; human gut
97
180
+
Tyr
GTA
[ENA]
¢þ
>WENV182434797
OIJA01000393
[OIJA] human gut metagenome; human gut
98
174
+
Arg
CCT
[ENA]
¢þ
>WENV182434861
OIJA01006835
[OIJA] human gut metagenome; human gut
104
179
+
Ala
GGC
[ENA]
¢þ
>WENV182434822
OIJA01002007
[OIJA] human gut metagenome; human gut
107
179
+
Arg
CCT
[ENA]
¢þ
>WENV182434781
OIJA01000009
[OIJA] human gut metagenome; human gut
107
182
+
Asp
GTC
[ENA]
¢þ
>WENV182434847
OIJA01004301
[OIJA] human gut metagenome; human gut
124
48
-
Arg
CCG
[ENA]
¢þ
>WENV182434862
OIJA01006880
[OIJA] human gut metagenome; human gut
124
49
-
Val
GAC
[ENA]
¢þ
>WENV182434837
OIJA01003079
[OIJA] human gut metagenome; human gut
133
58
-
Val
TAC
[ENA]
¢þ
>WENV182434840
OIJA01003281
[OIJA] human gut metagenome; human gut
157
230
+
Ala
TGC
[ENA]
¢þ
>WENV182434852
OIJA01005263
[OIJA] human gut metagenome; human gut
169
95
-
Thr
TGT
[ENA]
¢þ
>WENV182434813
OIJA01000963
[OIJA] human gut metagenome; human gut
180
251
+
Cys
GCA
[ENA]
¢þ
>WENV182434844
OIJA01003519
[OIJA] human gut metagenome; human gut
184
275
+
Ser
GGA
[ENA]
¢þ
>WENV182434848
OIJA01004404
[OIJA] human gut metagenome; human gut
187
98
-
Ser
GCT
[ENA]
¢þ
>WENV182434858
OIJA01006511
[OIJA] human gut metagenome; human gut
195
268
+
Gly
GCC
[ENA]
¢þ
>WENV182434819
OIJA01001770
[OIJA] human gut metagenome; human gut
206
120
-
Ser
TGA
[ENA]
¢þ
>WENV182434836
OIJA01003079
[OIJA] human gut metagenome; human gut
216
141
-
Gly
GCC
[ENA]
¢þ
>WENV182434782
OIJA01000009
[OIJA] human gut metagenome; human gut
219
293
+
Val
TAC
[ENA]
¢þ
>WENV182434842
OIJA01003474
[OIJA] human gut metagenome; human gut
223
294
+
Gln
TTG
[ENA]
¢þ
>WENV182434846
OIJA01004132
[OIJA] human gut metagenome; human gut
247
172
-
Pro
TGG
[ENA]
¢þ
>WENV182434864
OIJA01008541
[OIJA] human gut metagenome; human gut
273
345
+
Thr
GGT
[ENA]
¢þ
>WENV182434803
OIJA01000601
[OIJA] human gut metagenome; human gut
295
220
-
Pro
TGG
[ENA]
¢þ
>WENV182434818
OIJA01001490
[OIJA] human gut metagenome; human gut
299
373
+
Lys
CTT
[ENA]
¢þ
>WENV182434783
OIJA01000009
[OIJA] human gut metagenome; human gut
318
390
+
Thr
TGT
[ENA]
¢þ
>WENV182434854
OIJA01005549
[OIJA] human gut metagenome; human gut
340
413
+
Gln
CTG
[ENA]
¢þ
>WENV182434851
OIJA01005084
[OIJA] human gut metagenome; human gut
357
286
-
Glu
TTC
[ENA]
¢þ
>WENV182434820
OIJA01001849
[OIJA] human gut metagenome; human gut
381
454
+
Trp
CCA
[ENA]
¢þ
>WENV182434830
OIJA01002860
[OIJA] human gut metagenome; human gut
385
460
+
Arg
TCT
[ENA]
¢þ
>WENV182434856
OIJA01005646
[OIJA] human gut metagenome; human gut
417
344
-
Gln
TTG
[ENA]
¢þ
>WENV182434784
OIJA01000009
[OIJA] human gut metagenome; human gut
419
502
+
Tyr
GTA
[ENA]
¢þ
>WENV182434817
OIJA01001282
[OIJA] human gut metagenome; human gut
428
503
+
Phe
GAA
[ENA]
¢þ
>WENV182434855
OIJA01005549
[OIJA] human gut metagenome; human gut
446
521
+
Pro
CGG
[ENA]
¢þ
>WENV182434835
OIJA01003079
[OIJA] human gut metagenome; human gut
458
384
-
Asp
GTC
[ENA]
¢þ
>WENV182434829
OIJA01002797
[OIJA] human gut metagenome; human gut
459
533
+
Asp
GTC
[ENA]
¢þ
>WENV182434833
OIJA01002888
[OIJA] human gut metagenome; human gut
461
384
-
Arg
CCT
[ENA]
¢þ
>WENV182434821
OIJA01001862
[OIJA] human gut metagenome; human gut
466
538
+
Gln
CTG
[ENA]
¢þ
>WENV182434831
OIJA01002860
[OIJA] human gut metagenome; human gut
467
542
+
His
GTG
[ENA]
¢þ
>WENV182434828
OIJA01002791
[OIJA] human gut metagenome; human gut
467
555
+
Ser
GGA
[ENA]
¢þ
>WENV182434865
OIJA01008568
[OIJA] human gut metagenome; human gut
489
414
-
Thr
CGT
[ENA]
¢þ
>WENV182434859
OIJA01006524
[OIJA] human gut metagenome; human gut
512
438
-
Gly
TCC
[ENA]
¢þ
>WENV182434850
OIJA01005084
[OIJA] human gut metagenome; human gut
525
449
-
Met
CAT
[ENA]
¢þ
>WENV182434867
OIJA01009370
[OIJA] human gut metagenome; human gut
551
476
-
Lys
TTT
[ENA]
¢þ
>WENV182434857
OIJA01006126
[OIJA] human gut metagenome; human gut
565
490
-
Lys
CTT
[ENA]
¢þ
>WENV182434849
OIJA01004907
[OIJA] human gut metagenome; human gut
583
656
+
Lys
TTT
[ENA]
¢þ
>WENV182434860
OIJA01006692
[OIJA] human gut metagenome; human gut
620
544
-
fMet
CAT
[ENA]
¢þ
>WENV182434841
OIJA01003411
[OIJA] human gut metagenome; human gut
669
741
+
Glu
TTC
[ENA]
¢þ
>WENV182434826
OIJA01002606
[OIJA] human gut metagenome; human gut
674
745
+
Gln
TTG
[ENA]
¢þ
>WENV182434853
OIJA01005352
[OIJA] human gut metagenome; human gut
677
751
+
Arg
CCG
[ENA]
¢þ
>WENV182434834
OIJA01003079
[OIJA] human gut metagenome; human gut
710
635
-
Trp
CCA
[ENA]
¢þ
>WENV182434832
OIJA01002860
[OIJA] human gut metagenome; human gut
743
829
+
Leu
CAG
[ENA]
¢þ
>WENV182434843
OIJA01003515
[OIJA] human gut metagenome; human gut
795
869
+
Asn
GTT
[ENA]
¢þ
>WENV182434814
OIJA01001008
[OIJA] human gut metagenome; human gut
816
742
-
Thr
TGT
[ENA]
¢þ
>WENV182434810
OIJA01000882
[OIJA] human gut metagenome; human gut
850
777
-
fMet
CAT
[ENA]
¢þ
>WENV182434823
OIJA01002193
[OIJA] human gut metagenome; human gut
860
933
+
Gly
GCC
[ENA]
¢þ
>WENV182434838
OIJA01003211
[OIJA] human gut metagenome; human gut
870
956
+
Leu
AAG
[ENA]
¢þ
>WENV182434824
OIJA01002193
[OIJA] human gut metagenome; human gut
980
1062
+
Leu
CAG
[ENA]
¢þ
>WENV182434811
OIJA01000900
[OIJA] human gut metagenome; human gut
1017
926
-
Ser
CGA
[ENA]
¢þ
>WENV182434807
OIJA01000738
[OIJA] human gut metagenome; human gut
1027
1102
+
Thr
GGT
[ENA]
¢þ
>WENV182434787
OIJA01000066
[OIJA] human gut metagenome; human gut
1030
1105
+
Pro
TGG
[ENA]
¢þ
>WENV182434809
OIJA01000842
[OIJA] human gut metagenome; human gut
1046
953
-
Ser
GCT
[ENA]
¢þ
>WENV182434825
OIJA01002193
[OIJA] human gut metagenome; human gut
1070
1156
+
Leu
GAG
[ENA]
¢þ
>WENV182434788
OIJA01000066
[OIJA] human gut metagenome; human gut
1111
1181
+
Gly
TCC
[ENA]
¢þ
>WENV182434802
OIJA01000555
[OIJA] human gut metagenome; human gut
1127
1211
+
Leu
CAA
[ENA]
¢þ
>WENV182434815
OIJA01001112
[OIJA] human gut metagenome; human gut
1131
1056
-
Arg
CCT
[ENA]
¢þ
>WENV182434816
OIJA01001140
[OIJA] human gut metagenome; human gut
1138
1053
-
Ser
TGA
[ENA]
¢þ
>WENV182434808
OIJA01000842
[OIJA] human gut metagenome; human gut
1168
1081
-
Ser
TGA
[ENA]
¢þ
>WENV182434791
OIJA01000146
[OIJA] human gut metagenome; human gut
1449
1377
-
Trp
CCA
[ENA]
¢þ
>WENV182434795
OIJA01000192
[OIJA] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182434805
OIJA01000636
[OIJA] human gut metagenome; human gut
1591
1519
-
Glu
CTC
[ENA]
¢þ
>WENV182434794
OIJA01000192
[OIJA] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182434804
OIJA01000636
[OIJA] human gut metagenome; human gut
1744
1657
-
Ser
GCT
[ENA]
¢þ
>WENV182434806
OIJA01000653
[OIJA] human gut metagenome; human gut
1994
2069
+
Ile
GAT
[ENA]
¢þ
>WENV182434801
OIJA01000473
[OIJA] human gut metagenome; human gut
2065
1990
-
Arg
ACG
[ENA]
¢þ
>WENV182434800
OIJA01000473
[OIJA] human gut metagenome; human gut
2200
2117
-
Leu
TAA
[ENA]
¢þ
>WENV182434796
OIJA01000232
[OIJA] human gut metagenome; human gut
2217
2144
-
Pro
CGG
[ENA]
¢þ
>WENV182434799
OIJA01000473
[OIJA] human gut metagenome; human gut
2286
2204
-
Tyr
GTA
[ENA]
¢þ
>WENV182434792
OIJA01000180
[OIJA] human gut metagenome; human gut
2347
2419
+
Phe
GAA
[ENA]
¢þ
>WENV182434798
OIJA01000473
[OIJA] human gut metagenome; human gut
2373
2300
-
Val
TAC
[ENA]
¢þ
>WENV182434793
OIJA01000180
[OIJA] human gut metagenome; human gut
2433
2507
+
Lys
TTT
[ENA]
¢þ
>WENV182434790
OIJA01000141
[OIJA] human gut metagenome; human gut
3121
3039
-
Leu
TAG
[ENA]
¢þ
>WENV182434789
OIJA01000067
[OIJA] human gut metagenome; human gut
3794
3718
-
Val
CAC
[ENA]
¢þ
>WENV182434786
OIJA01000014
[OIJA] human gut metagenome; human gut
4058
3986
-
Glu
CTC
[ENA]
¢þ
>WENV182434785
OIJA01000011
[OIJA] human gut metagenome; human gut
7074
6995
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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