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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIJY] human gut metagenome; human gut
HIT:
93 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182440292
OIJY01000643
[OIJY] human gut metagenome; human gut
7
92
+
Ser
TGA
[ENA]
¢þ
>WENV182440355
OIJY01007772
[OIJY] human gut metagenome; human gut
59
144
+
Leu
TAA
[ENA]
¢þ
>WENV182440303
OIJY01001314
[OIJY] human gut metagenome; human gut
70
141
+
Cys
GCA
[ENA]
¢þ
>WENV182440287
OIJY01000439
[OIJY] human gut metagenome; human gut
109
180
+
Asn
GTT
[ENA]
¢þ
>WENV182440351
OIJY01007210
[OIJY] human gut metagenome; human gut
120
48
-
Arg
CCG
[ENA]
¢þ
>WENV182440357
OIJY01009385
[OIJY] human gut metagenome; human gut
140
68
-
Phe
GAA
[ENA]
¢þ
>WENV182440341
OIJY01004707
[OIJY] human gut metagenome; human gut
167
79
-
Ser
GCT
[ENA]
¢þ
>WENV182440354
OIJY01007492
[OIJY] human gut metagenome; human gut
173
100
-
Gln
TTG
[ENA]
¢þ
>WENV182440288
OIJY01000439
[OIJY] human gut metagenome; human gut
195
266
+
Glu
TTC
[ENA]
¢þ
>WENV182440356
OIJY01007772
[OIJY] human gut metagenome; human gut
195
270
+
Arg
ACG
[ENA]
¢þ
>WENV182440316
OIJY01002191
[OIJY] human gut metagenome; human gut
200
126
-
Ile2
CAT
[ENA]
¢þ
>WENV182440358
OIJY01010125
[OIJY] human gut metagenome; human gut
229
300
+
Gln
TTG
[ENA]
¢þ
>WENV182440336
OIJY01003821
[OIJY] human gut metagenome; human gut
263
338
+
Lys
TTT
[ENA]
¢þ
>WENV182440299
OIJY01001103
[OIJY] human gut metagenome; human gut
289
361
+
Trp
CCA
[ENA]
¢þ
>WENV182440289
OIJY01000439
[OIJY] human gut metagenome; human gut
311
383
+
Thr
TGT
[ENA]
¢þ
>WENV182440317
OIJY01002210
[OIJY] human gut metagenome; human gut
313
387
+
Thr
TGT
[ENA]
¢þ
>WENV182440302
OIJY01001145
[OIJY] human gut metagenome; human gut
321
250
-
Glu
TTC
[ENA]
¢þ
>WENV182440325
OIJY01002956
[OIJY] human gut metagenome; human gut
325
410
+
Ser
TGA
[ENA]
¢þ
>WENV182440349
OIJY01006817
[OIJY] human gut metagenome; human gut
327
255
-
Cys
GCA
[ENA]
¢þ
>WENV182440343
OIJY01005424
[OIJY] human gut metagenome; human gut
334
258
-
Arg
CCT
[ENA]
¢þ
>WENV182440335
OIJY01003811
[OIJY] human gut metagenome; human gut
334
409
+
Gly
CCC
[ENA]
¢þ
>WENV182440350
OIJY01007005
[OIJY] human gut metagenome; human gut
337
420
+
Arg
GCG
[ENA]
¢þ
>WENV182440319
OIJY01002314
[OIJY] human gut metagenome; human gut
340
415
+
Ala
GGC
[ENA]
¢þ
>WENV182440305
OIJY01001416
[OIJY] human gut metagenome; human gut
344
251
-
Ser
GCT
[ENA]
¢þ
>WENV182440348
OIJY01006310
[OIJY] human gut metagenome; human gut
355
427
+
Glu
TTC
[ENA]
¢þ
>WENV182440286
OIJY01000398
[OIJY] human gut metagenome; human gut
360
430
+
Gly
TCC
[ENA]
¢þ
>WENV182440352
OIJY01007483
[OIJY] human gut metagenome; human gut
405
481
+
Arg
TCT
[ENA]
¢þ
>WENV182440290
OIJY01000439
[OIJY] human gut metagenome; human gut
412
495
+
Tyr
GTA
[ENA]
¢þ
>WENV182440359
OIJY01010623
[OIJY] human gut metagenome; human gut
421
347
-
Arg
TCT
[ENA]
¢þ
>WENV182440342
OIJY01005227
[OIJY] human gut metagenome; human gut
436
363
-
Gln
CTG
[ENA]
¢þ
>WENV182440312
OIJY01001777
[OIJY] human gut metagenome; human gut
440
522
+
Leu
TAG
[ENA]
¢þ
>WENV182440344
OIJY01005882
[OIJY] human gut metagenome; human gut
445
527
+
Leu
GAG
[ENA]
¢þ
>WENV182440339
OIJY01004509
[OIJY] human gut metagenome; human gut
459
384
-
Arg
CCG
[ENA]
¢þ
>WENV182440304
OIJY01001416
[OIJY] human gut metagenome; human gut
464
377
-
Ser
TGA
[ENA]
¢þ
>WENV182440347
OIJY01006035
[OIJY] human gut metagenome; human gut
485
559
+
Ala
GGC
[ENA]
¢þ
>WENV182440353
OIJY01007483
[OIJY] human gut metagenome; human gut
487
562
+
His
GTG
[ENA]
¢þ
>WENV182440301
OIJY01001145
[OIJY] human gut metagenome; human gut
489
413
-
Met
CAT
[ENA]
¢þ
>WENV182440337
OIJY01003941
[OIJY] human gut metagenome; human gut
520
445
-
Ala
GGC
[ENA]
¢þ
>WENV182440313
OIJY01002133
[OIJY] human gut metagenome; human gut
535
609
+
Thr
TGT
[ENA]
¢þ
>WENV182440320
OIJY01002422
[OIJY] human gut metagenome; human gut
556
647
+
Ser
GGA
[ENA]
¢þ
>WENV182440307
OIJY01001538
[OIJY] human gut metagenome; human gut
572
648
+
Val
TAC
[ENA]
¢þ
>WENV182440324
OIJY01002594
[OIJY] human gut metagenome; human gut
573
498
-
Thr
GGT
[ENA]
¢þ
>WENV182440318
OIJY01002210
[OIJY] human gut metagenome; human gut
573
658
+
Tyr
GTA
[ENA]
¢þ
>WENV182440333
OIJY01003628
[OIJY] human gut metagenome; human gut
598
524
-
Lys
TTT
[ENA]
¢þ
>WENV182440327
OIJY01003301
[OIJY] human gut metagenome; human gut
601
688
+
Ser
GCT
[ENA]
¢þ
>WENV182440273
OIJY01000115
[OIJY] human gut metagenome; human gut
616
689
+
Gly
GCC
[ENA]
¢þ
>WENV182440340
OIJY01004679
[OIJY] human gut metagenome; human gut
626
701
+
Ile2
CAT
[ENA]
¢þ
>WENV182440314
OIJY01002133
[OIJY] human gut metagenome; human gut
652
735
+
Tyr
GTA
[ENA]
¢þ
>WENV182440323
OIJY01002594
[OIJY] human gut metagenome; human gut
653
577
-
Asp
GTC
[ENA]
¢þ
>WENV182440310
OIJY01001593
[OIJY] human gut metagenome; human gut
671
755
+
Leu
CAG
[ENA]
¢þ
>WENV182440308
OIJY01001538
[OIJY] human gut metagenome; human gut
672
746
+
Met
CAT
[ENA]
¢þ
>WENV182440296
OIJY01001051
[OIJY] human gut metagenome; human gut
675
599
-
Arg
ACG
[ENA]
¢þ
>WENV182440280
OIJY01000214
[OIJY] human gut metagenome; human gut
679
605
-
Ala
TGC
[ENA]
¢þ
>WENV182440332
OIJY01003628
[OIJY] human gut metagenome; human gut
686
615
-
Gln
TTG
[ENA]
¢þ
>WENV182440346
OIJY01005907
[OIJY] human gut metagenome; human gut
697
621
-
Pro
TGG
[ENA]
¢þ
>WENV182440345
OIJY01005882
[OIJY] human gut metagenome; human gut
722
641
-
Leu
TAG
[ENA]
¢þ
>WENV182440326
OIJY01002970
[OIJY] human gut metagenome; human gut
728
799
+
Gln
CTG
[ENA]
¢þ
>WENV182440279
OIJY01000214
[OIJY] human gut metagenome; human gut
770
696
-
Ile
GAT
[ENA]
¢þ
>WENV182440329
OIJY01003359
[OIJY] human gut metagenome; human gut
772
697
-
Ala
TGC
[ENA]
¢þ
>WENV182440331
OIJY01003628
[OIJY] human gut metagenome; human gut
828
754
-
His
GTG
[ENA]
¢þ
>WENV182440315
OIJY01002133
[OIJY] human gut metagenome; human gut
828
900
+
Thr
GGT
[ENA]
¢þ
>WENV182440283
OIJY01000313
[OIJY] human gut metagenome; human gut
840
754
-
Ser
TGA
[ENA]
¢þ
>WENV182440338
OIJY01004170
[OIJY] human gut metagenome; human gut
873
797
-
Val
TAC
[ENA]
¢þ
>WENV182440328
OIJY01003359
[OIJY] human gut metagenome; human gut
886
812
-
Ile
GAT
[ENA]
¢þ
>WENV182440274
OIJY01000128
[OIJY] human gut metagenome; human gut
889
964
+
Pro
GGG
[ENA]
¢þ
>WENV182440322
OIJY01002594
[OIJY] human gut metagenome; human gut
905
830
-
Trp
CCA
[ENA]
¢þ
>WENV182440294
OIJY01000729
[OIJY] human gut metagenome; human gut
916
842
-
Cys
GCA
[ENA]
¢þ
>WENV182440321
OIJY01002578
[OIJY] human gut metagenome; human gut
916
989
+
fMet
CAT
[ENA]
¢þ
>WENV182440330
OIJY01003628
[OIJY] human gut metagenome; human gut
950
875
-
Arg
TCT
[ENA]
¢þ
>WENV182440334
OIJY01003778
[OIJY] human gut metagenome; human gut
950
877
-
Gln
CTG
[ENA]
¢þ
>WENV182440306
OIJY01001497
[OIJY] human gut metagenome; human gut
991
916
-
His
GTG
[ENA]
¢þ
>WENV182440309
OIJY01001552
[OIJY] human gut metagenome; human gut
1003
915
-
Ser
GGA
[ENA]
¢þ
>WENV182440293
OIJY01000729
[OIJY] human gut metagenome; human gut
1021
946
-
Gly
GCC
[ENA]
¢þ
>WENV182440297
OIJY01001083
[OIJY] human gut metagenome; human gut
1178
1098
-
Leu
TAG
[ENA]
¢þ
>WENV182440311
OIJY01001690
[OIJY] human gut metagenome; human gut
1398
1473
+
Pro
TGG
[ENA]
¢þ
>WENV182440271
OIJY01000043
[OIJY] human gut metagenome; human gut
1421
1346
-
Lys
CTT
[ENA]
¢þ
>WENV182440298
OIJY01001098
[OIJY] human gut metagenome; human gut
1466
1543
+
Arg
CCT
[ENA]
¢þ
>WENV182440300
OIJY01001130
[OIJY] human gut metagenome; human gut
1630
1702
+
Arg
CCT
[ENA]
¢þ
>WENV182440295
OIJY01000812
[OIJY] human gut metagenome; human gut
1689
1614
-
Val
GAC
[ENA]
¢þ
>WENV182440291
OIJY01000621
[OIJY] human gut metagenome; human gut
2013
1941
-
Thr
CGT
[ENA]
¢þ
>WENV182440268
OIJY01000014
[OIJY] human gut metagenome; human gut
2029
1946
-
Leu
CAG
[ENA]
¢þ
>WENV182440285
OIJY01000381
[OIJY] human gut metagenome; human gut
2096
2024
-
Gln
CTG
[ENA]
¢þ
>WENV182440284
OIJY01000375
[OIJY] human gut metagenome; human gut
2155
2082
-
Trp
CCA
[ENA]
¢þ
>WENV182440282
OIJY01000273
[OIJY] human gut metagenome; human gut
2203
2131
-
Glu
CTC
[ENA]
¢þ
>WENV182440275
OIJY01000146
[OIJY] human gut metagenome; human gut
2401
2328
-
Lys
CTT
[ENA]
¢þ
>WENV182440278
OIJY01000193
[OIJY] human gut metagenome; human gut
2993
3067
+
Arg
CCG
[ENA]
¢þ
>WENV182440277
OIJY01000185
[OIJY] human gut metagenome; human gut
3421
3337
-
Leu
TAA
[ENA]
¢þ
>WENV182440267
OIJY01000014
[OIJY] human gut metagenome; human gut
3462
3376
-
Leu
AAG
[ENA]
¢þ
>WENV182440276
OIJY01000185
[OIJY] human gut metagenome; human gut
3510
3437
-
Gly
GCC
[ENA]
¢þ
>WENV182440281
OIJY01000234
[OIJY] human gut metagenome; human gut
3543
3472
-
Thr
GGT
[ENA]
¢þ
>WENV182440272
OIJY01000064
[OIJY] human gut metagenome; human gut
4620
4537
-
Leu
CAA
[ENA]
¢þ
>WENV182440270
OIJY01000043
[OIJY] human gut metagenome; human gut
4818
4742
-
Ile
GAT
[ENA]
¢þ
>WENV182440269
OIJY01000043
[OIJY] human gut metagenome; human gut
4897
4822
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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