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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OIKB] human gut metagenome; human gut
HIT:
148 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182441014
OIKB01001631
[OIKB] human gut metagenome; human gut
2
75
+
Gln
CTG
[ENA]
¢þ
>WENV182440930
OIKB01000026
[OIKB] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182440988
OIKB01000521
[OIKB] human gut metagenome; human gut
42
115
+
Ala
CGC
[ENA]
¢þ
>WENV182441053
OIKB01006527
[OIKB] human gut metagenome; human gut
48
120
+
Trp
CCA
[ENA]
¢þ
>WENV182441060
OIKB01007848
[OIKB] human gut metagenome; human gut
74
-1
-
Thr
GGT
[ENA]
¢þ
>WENV182441038
OIKB01004314
[OIKB] human gut metagenome; human gut
77
152
+
Asp
GTC
[ENA]
¢þ
>WENV182440982
OIKB01000447
[OIKB] human gut metagenome; human gut
98
174
+
Asp
GTC
[ENA]
¢þ
>WENV182441057
OIKB01007658
[OIKB] human gut metagenome; human gut
119
47
-
Asn
GTT
[ENA]
¢þ
>WENV182440987
OIKB01000513
[OIKB] human gut metagenome; human gut
134
58
-
Asp
GTC
[ENA]
¢þ
>WENV182441043
OIKB01004761
[OIKB] human gut metagenome; human gut
139
60
-
His
GTG
[ENA]
¢þ
>WENV182441051
OIKB01006042
[OIKB] human gut metagenome; human gut
149
232
+
Leu
TAA
[ENA]
¢þ
>WENV182441028
OIKB01003083
[OIKB] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182440929
OIKB01000024
[OIKB] human gut metagenome; human gut
165
89
-
Val
TAC
[ENA]
¢þ
>WENV182441058
OIKB01007737
[OIKB] human gut metagenome; human gut
170
95
-
Phe
GAA
[ENA]
¢þ
>WENV182441039
OIKB01004314
[OIKB] human gut metagenome; human gut
179
266
+
Leu
TAA
[ENA]
¢þ
>WENV182440983
OIKB01000447
[OIKB] human gut metagenome; human gut
183
258
+
Trp
CCA
[ENA]
¢þ
>WENV182440965
OIKB01000186
[OIKB] human gut metagenome; human gut
186
93
-
Ser
GCT
[ENA]
¢þ
>WENV182440990
OIKB01000630
[OIKB] human gut metagenome; human gut
189
115
-
Gly
TCC
[ENA]
¢þ
>WENV182441049
OIKB01005829
[OIKB] human gut metagenome; human gut
192
106
-
Leu
AAG
[ENA]
¢þ
>WENV182441063
OIKB01008425
[OIKB] human gut metagenome; human gut
196
121
-
Arg
CCT
[ENA]
¢þ
>WENV182441044
OIKB01004855
[OIKB] human gut metagenome; human gut
196
271
+
Ile2
CAT
[ENA]
¢þ
>WENV182441062
OIKB01008396
[OIKB] human gut metagenome; human gut
200
272
+
Glu
CTC
[ENA]
¢þ
>WENV182441012
OIKB01001540
[OIKB] human gut metagenome; human gut
206
122
-
Leu
CAA
[ENA]
¢þ
>WENV182440941
OIKB01000040
[OIKB] human gut metagenome; human gut
206
131
-
Pro
GGG
[ENA]
¢þ
>WENV182440986
OIKB01000513
[OIKB] human gut metagenome; human gut
213
138
-
Val
TAC
[ENA]
¢þ
>WENV182441031
OIKB01003415
[OIKB] human gut metagenome; human gut
215
291
+
Arg
ACG
[ENA]
¢þ
>WENV182440919
OIKB01000008
[OIKB] human gut metagenome; human gut
216
143
-
Pro
CGG
[ENA]
¢þ
>WENV182441059
OIKB01007808
[OIKB] human gut metagenome; human gut
218
293
+
Thr
CGT
[ENA]
¢þ
>WENV182440963
OIKB01000173
[OIKB] human gut metagenome; human gut
225
149
-
Arg
ACG
[ENA]
¢þ
>WENV182441054
OIKB01006856
[OIKB] human gut metagenome; human gut
239
312
+
Val
TAC
[ENA]
¢þ
>WENV182441061
OIKB01008193
[OIKB] human gut metagenome; human gut
243
313
+
Gly
CCC
[ENA]
¢þ
>WENV182440939
OIKB01000038
[OIKB] human gut metagenome; human gut
264
190
-
Cys
GCA
[ENA]
¢þ
>WENV182441052
OIKB01006352
[OIKB] human gut metagenome; human gut
270
197
-
Gly
CCC
[ENA]
¢þ
>WENV182440927
OIKB01000019
[OIKB] human gut metagenome; human gut
289
215
-
Thr
TGT
[ENA]
¢þ
>WENV182440985
OIKB01000513
[OIKB] human gut metagenome; human gut
295
220
-
Gly
GCC
[ENA]
¢þ
>WENV182440964
OIKB01000186
[OIKB] human gut metagenome; human gut
307
220
-
Ser
TGA
[ENA]
¢þ
>WENV182441055
OIKB01006856
[OIKB] human gut metagenome; human gut
319
402
+
Tyr
GTA
[ENA]
¢þ
>WENV182441042
OIKB01004761
[OIKB] human gut metagenome; human gut
324
254
-
Gly
TCC
[ENA]
¢þ
>WENV182441020
OIKB01002153
[OIKB] human gut metagenome; human gut
335
406
+
Glu
TTC
[ENA]
¢þ
>WENV182440933
OIKB01000030
[OIKB] human gut metagenome; human gut
336
410
+
Glu
CTC
[ENA]
¢þ
>WENV182441027
OIKB01002802
[OIKB] human gut metagenome; human gut
345
260
-
Tyr
GTA
[ENA]
¢þ
>WENV182441045
OIKB01004855
[OIKB] human gut metagenome; human gut
372
448
+
Arg
TCT
[ENA]
¢þ
>WENV182441040
OIKB01004678
[OIKB] human gut metagenome; human gut
376
303
-
Lys
TTT
[ENA]
¢þ
>WENV182441002
OIKB01000892
[OIKB] human gut metagenome; human gut
386
470
+
Tyr
GTA
[ENA]
¢þ
>WENV182440989
OIKB01000537
[OIKB] human gut metagenome; human gut
392
317
-
Trp
CCA
[ENA]
¢þ
>WENV182440918
OIKB01000008
[OIKB] human gut metagenome; human gut
397
472
+
Phe
GAA
[ENA]
¢þ
>WENV182441041
OIKB01004761
[OIKB] human gut metagenome; human gut
417
341
-
Pro
TGG
[ENA]
¢þ
>WENV182441056
OIKB01006856
[OIKB] human gut metagenome; human gut
419
493
+
Thr
TGT
[ENA]
¢þ
>WENV182440955
OIKB01000111
[OIKB] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182441022
OIKB01002229
[OIKB] human gut metagenome; human gut
426
352
-
Arg
CCT
[ENA]
¢þ
>WENV182441050
OIKB01005836
[OIKB] human gut metagenome; human gut
448
521
+
Gln
TTG
[ENA]
¢þ
>WENV182441021
OIKB01002153
[OIKB] human gut metagenome; human gut
449
521
+
Cys
GCA
[ENA]
¢þ
>WENV182441032
OIKB01003529
[OIKB] human gut metagenome; human gut
472
377
-
SeC
TCA
[ENA]
¢þ
>WENV182441011
OIKB01001449
[OIKB] human gut metagenome; human gut
527
451
-
Pro
CGG
[ENA]
¢þ
>WENV182441029
OIKB01003210
[OIKB] human gut metagenome; human gut
547
622
+
Trp
CCA
[ENA]
¢þ
>WENV182441036
OIKB01004173
[OIKB] human gut metagenome; human gut
555
479
-
Ile
GAT
[ENA]
¢þ
>WENV182441017
OIKB01001804
[OIKB] human gut metagenome; human gut
572
647
+
Lys
TTT
[ENA]
¢þ
>WENV182441037
OIKB01004251
[OIKB] human gut metagenome; human gut
584
671
+
Ser
GCT
[ENA]
¢þ
>WENV182441003
OIKB01000892
[OIKB] human gut metagenome; human gut
587
661
+
Gly
TCC
[ENA]
¢þ
>WENV182441046
OIKB01004984
[OIKB] human gut metagenome; human gut
598
525
-
Lys
CTT
[ENA]
¢þ
>WENV182441026
OIKB01002802
[OIKB] human gut metagenome; human gut
605
531
-
Thr
TGT
[ENA]
¢þ
>WENV182441035
OIKB01004173
[OIKB] human gut metagenome; human gut
634
559
-
Ala
TGC
[ENA]
¢þ
>WENV182441024
OIKB01002628
[OIKB] human gut metagenome; human gut
639
726
+
Ser
GGA
[ENA]
¢þ
>WENV182441048
OIKB01005247
[OIKB] human gut metagenome; human gut
646
573
-
Ile2
CAT
[ENA]
¢þ
>WENV182441033
OIKB01003607
[OIKB] human gut metagenome; human gut
656
581
-
Gly
CCC
[ENA]
¢þ
>WENV182441004
OIKB01000892
[OIKB] human gut metagenome; human gut
668
743
+
Thr
GGT
[ENA]
¢þ
>WENV182441047
OIKB01005227
[OIKB] human gut metagenome; human gut
672
598
-
Gly
TCC
[ENA]
¢þ
>WENV182441013
OIKB01001610
[OIKB] human gut metagenome; human gut
763
687
-
Pro
GGG
[ENA]
¢þ
>WENV182441034
OIKB01003642
[OIKB] human gut metagenome; human gut
791
721
-
Gly
TCC
[ENA]
¢þ
>WENV182441000
OIKB01000831
[OIKB] human gut metagenome; human gut
794
710
-
Leu
CAA
[ENA]
¢þ
>WENV182441015
OIKB01001725
[OIKB] human gut metagenome; human gut
838
925
+
Ser
TGA
[ENA]
¢þ
>WENV182441030
OIKB01003238
[OIKB] human gut metagenome; human gut
868
794
-
Gln
CTG
[ENA]
¢þ
>WENV182441025
OIKB01002700
[OIKB] human gut metagenome; human gut
895
979
+
Leu
CAG
[ENA]
¢þ
>WENV182441009
OIKB01001353
[OIKB] human gut metagenome; human gut
898
812
-
Leu
GAG
[ENA]
¢þ
>WENV182441016
OIKB01001725
[OIKB] human gut metagenome; human gut
932
1023
+
Ser
GGA
[ENA]
¢þ
>WENV182441023
OIKB01002452
[OIKB] human gut metagenome; human gut
1013
1088
+
Val
TAC
[ENA]
¢þ
>WENV182441019
OIKB01001841
[OIKB] human gut metagenome; human gut
1036
1112
+
Arg
TCT
[ENA]
¢þ
>WENV182440998
OIKB01000720
[OIKB] human gut metagenome; human gut
1127
1051
-
Pro
TGG
[ENA]
¢þ
>WENV182441018
OIKB01001824
[OIKB] human gut metagenome; human gut
1239
1314
+
Thr
CGT
[ENA]
¢þ
>WENV182440997
OIKB01000720
[OIKB] human gut metagenome; human gut
1256
1170
-
Leu
CAG
[ENA]
¢þ
>WENV182441005
OIKB01001132
[OIKB] human gut metagenome; human gut
1297
1375
+
Arg
CCT
[ENA]
¢þ
>WENV182440996
OIKB01000720
[OIKB] human gut metagenome; human gut
1352
1277
-
His
GTG
[ENA]
¢þ
>WENV182440980
OIKB01000400
[OIKB] human gut metagenome; human gut
1398
1471
+
Asn
GTT
[ENA]
¢þ
>WENV182441010
OIKB01001354
[OIKB] human gut metagenome; human gut
1454
1383
-
Gln
TTG
[ENA]
¢þ
>WENV182440978
OIKB01000395
[OIKB] human gut metagenome; human gut
1465
1539
+
Ile
GAT
[ENA]
¢þ
>WENV182440995
OIKB01000720
[OIKB] human gut metagenome; human gut
1487
1411
-
Arg
CCG
[ENA]
¢þ
>WENV182441008
OIKB01001342
[OIKB] human gut metagenome; human gut
1503
1427
-
Arg
ACG
[ENA]
¢þ
>WENV182440974
OIKB01000304
[OIKB] human gut metagenome; human gut
1504
1418
-
Leu
CAG
[ENA]
¢þ
>WENV182440979
OIKB01000395
[OIKB] human gut metagenome; human gut
1556
1630
+
Ala
TGC
[ENA]
¢þ
>WENV182441006
OIKB01001265
[OIKB] human gut metagenome; human gut
1619
1545
-
Cys
GCA
[ENA]
¢þ
>WENV182441007
OIKB01001342
[OIKB] human gut metagenome; human gut
1643
1567
-
Arg
ACG
[ENA]
¢þ
>WENV182441001
OIKB01000860
[OIKB] human gut metagenome; human gut
1685
1760
+
Phe
GAA
[ENA]
¢þ
>WENV182440992
OIKB01000664
[OIKB] human gut metagenome; human gut
1750
1832
+
Leu
GAG
[ENA]
¢þ
>WENV182440973
OIKB01000304
[OIKB] human gut metagenome; human gut
1779
1705
-
His
GTG
[ENA]
¢þ
>WENV182440991
OIKB01000648
[OIKB] human gut metagenome; human gut
1780
1856
+
fMet
CAT
[ENA]
¢þ
>WENV182440981
OIKB01000400
[OIKB] human gut metagenome; human gut
1800
1727
-
Ala
TGC
[ENA]
¢þ
>WENV182440976
OIKB01000311
[OIKB] human gut metagenome; human gut
1801
1726
-
Thr
GGT
[ENA]
¢þ
>WENV182440949
OIKB01000087
[OIKB] human gut metagenome; human gut
1857
1784
-
Gly
CCC
[ENA]
¢þ
>WENV182440972
OIKB01000304
[OIKB] human gut metagenome; human gut
1863
1788
-
Arg
TCT
[ENA]
¢þ
>WENV182440971
OIKB01000268
[OIKB] human gut metagenome; human gut
1889
1979
+
Ser
CGA
[ENA]
¢þ
>WENV182440993
OIKB01000664
[OIKB] human gut metagenome; human gut
2027
1946
-
Leu
TAG
[ENA]
¢þ
>WENV182440999
OIKB01000746
[OIKB] human gut metagenome; human gut
2070
2161
+
Ser
GGA
[ENA]
¢þ
>WENV182440994
OIKB01000687
[OIKB] human gut metagenome; human gut
2428
2353
-
Pro
CGG
[ENA]
¢þ
>WENV182440984
OIKB01000475
[OIKB] human gut metagenome; human gut
2864
2943
+
Leu
CAA
[ENA]
¢þ
>WENV182440968
OIKB01000229
[OIKB] human gut metagenome; human gut
2923
2848
-
Ala
GGC
[ENA]
¢þ
>WENV182440975
OIKB01000311
[OIKB] human gut metagenome; human gut
3097
3024
-
Ile2
CAT
[ENA]
¢þ
>WENV182440977
OIKB01000369
[OIKB] human gut metagenome; human gut
3644
3719
+
Val
GAC
[ENA]
¢þ
>WENV182440960
OIKB01000137
[OIKB] human gut metagenome; human gut
3947
3873
-
Glu
TTC
[ENA]
¢þ
>WENV182440959
OIKB01000137
[OIKB] human gut metagenome; human gut
4115
4039
-
Met
CAT
[ENA]
¢þ
>WENV182440967
OIKB01000224
[OIKB] human gut metagenome; human gut
4408
4332
-
Asn
GTT
[ENA]
¢þ
>WENV182440969
OIKB01000242
[OIKB] human gut metagenome; human gut
4497
4591
+
SeC
TCA
[ENA]
¢þ
>WENV182440966
OIKB01000224
[OIKB] human gut metagenome; human gut
4524
4450
-
Glu
CTC
[ENA]
¢þ
>WENV182440970
OIKB01000264
[OIKB] human gut metagenome; human gut
5206
5282
+
Arg
CCG
[ENA]
¢þ
>WENV182440917
OIKB01000007
[OIKB] human gut metagenome; human gut
7535
7607
+
Arg
CCG
[ENA]
¢þ
>WENV182440924
OIKB01000015
[OIKB] human gut metagenome; human gut
8355
8443
+
Ser
GGA
[ENA]
¢þ
>WENV182440962
OIKB01000154
[OIKB] human gut metagenome; human gut
8942
8866
-
Val
TAC
[ENA]
¢þ
>WENV182440954
OIKB01000106
[OIKB] human gut metagenome; human gut
8970
8885
-
Ser
TGA
[ENA]
¢þ
>WENV182440950
OIKB01000088
[OIKB] human gut metagenome; human gut
9109
9183
+
Ala
GGC
[ENA]
¢þ
>WENV182440961
OIKB01000141
[OIKB] human gut metagenome; human gut
9819
9895
+
Val
CAC
[ENA]
¢þ
>WENV182440953
OIKB01000099
[OIKB] human gut metagenome; human gut
9895
9970
+
Phe
GAA
[ENA]
¢þ
>WENV182440956
OIKB01000136
[OIKB] human gut metagenome; human gut
10004
10077
+
Gly
GCC
[ENA]
¢þ
>WENV182440951
OIKB01000091
[OIKB] human gut metagenome; human gut
10062
9987
-
His
GTG
[ENA]
¢þ
>WENV182440957
OIKB01000136
[OIKB] human gut metagenome; human gut
10124
10205
+
Leu
CAG
[ENA]
¢þ
>WENV182440958
OIKB01000136
[OIKB] human gut metagenome; human gut
10228
10312
+
Leu
GAG
[ENA]
¢þ
>WENV182440938
OIKB01000034
[OIKB] human gut metagenome; human gut
11327
11254
-
Trp
CCA
[ENA]
¢þ
>WENV182440937
OIKB01000034
[OIKB] human gut metagenome; human gut
12692
12620
-
Thr
GGT
[ENA]
¢þ
>WENV182440936
OIKB01000034
[OIKB] human gut metagenome; human gut
12893
12810
-
Tyr
GTA
[ENA]
¢þ
>WENV182440935
OIKB01000034
[OIKB] human gut metagenome; human gut
13010
12936
-
Thr
TGT
[ENA]
¢þ
>WENV182440946
OIKB01000053
[OIKB] human gut metagenome; human gut
13039
12957
-
Leu
TAG
[ENA]
¢þ
>WENV182440947
OIKB01000062
[OIKB] human gut metagenome; human gut
14483
14571
+
Ser
GGA
[ENA]
¢þ
>WENV182440952
OIKB01000095
[OIKB] human gut metagenome; human gut
16640
16715
+
Pro
TGG
[ENA]
¢þ
>WENV182440922
OIKB01000012
[OIKB] human gut metagenome; human gut
21204
21278
+
Ile2
CAT
[ENA]
¢þ
>WENV182440948
OIKB01000077
[OIKB] human gut metagenome; human gut
21219
21293
+
Arg
TCT
[ENA]
¢þ
>WENV182440934
OIKB01000034
[OIKB] human gut metagenome; human gut
26117
26191
+
Asn
GTT
[ENA]
¢þ
>WENV182440945
OIKB01000046
[OIKB] human gut metagenome; human gut
27647
27574
-
Lys
CTT
[ENA]
¢þ
>WENV182440944
OIKB01000046
[OIKB] human gut metagenome; human gut
27740
27667
-
Lys
CTT
[ENA]
¢þ
>WENV182440943
OIKB01000046
[OIKB] human gut metagenome; human gut
27837
27764
-
Lys
CTT
[ENA]
¢þ
>WENV182440940
OIKB01000040
[OIKB] human gut metagenome; human gut
35031
35102
+
Gln
CTG
[ENA]
¢þ
>WENV182440926
OIKB01000017
[OIKB] human gut metagenome; human gut
36998
36915
-
Tyr
GTA
[ENA]
¢þ
>WENV182440942
OIKB01000045
[OIKB] human gut metagenome; human gut
38671
38744
+
fMet
CAT
[ENA]
¢þ
>WENV182440931
OIKB01000028
[OIKB] human gut metagenome; human gut
42179
42254
+
Lys
TTT
[ENA]
¢þ
>WENV182440928
OIKB01000023
[OIKB] human gut metagenome; human gut
42733
42659
-
Glu
TTC
[ENA]
¢þ
>WENV182440925
OIKB01000017
[OIKB] human gut metagenome; human gut
51654
51728
+
Thr
TGT
[ENA]
¢þ
>WENV182440932
OIKB01000029
[OIKB] human gut metagenome; human gut
54104
54032
-
Glu
TTC
[ENA]
¢þ
>WENV182440923
OIKB01000014
[OIKB] human gut metagenome; human gut
60684
60612
-
Arg
CCT
[ENA]
¢þ
>WENV182440921
OIKB01000011
[OIKB] human gut metagenome; human gut
74140
74067
-
Trp
CCA
[ENA]
¢þ
>WENV182440916
OIKB01000006
[OIKB] human gut metagenome; human gut
87462
87533
+
Gln
TTG
[ENA]
¢þ
>WENV182440920
OIKB01000011
[OIKB] human gut metagenome; human gut
87762
87847
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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