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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIKH] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182442804
OIKH01003779
[OIKH] human gut metagenome; human gut
35
111
+
Phe
GAA
[ENA]
¢þ
>WENV182442806
OIKH01003912
[OIKH] human gut metagenome; human gut
73
158
+
Tyr
GTA
[ENA]
¢þ
>WENV182442810
OIKH01004668
[OIKH] human gut metagenome; human gut
77
3
-
Glu
TTC
[ENA]
¢þ
>WENV182442792
OIKH01001794
[OIKH] human gut metagenome; human gut
102
183
+
Leu
CAG
[ENA]
¢þ
>WENV182442805
OIKH01003872
[OIKH] human gut metagenome; human gut
190
276
+
Leu
GAG
[ENA]
¢þ
>WENV182442809
OIKH01004668
[OIKH] human gut metagenome; human gut
203
128
-
Lys
CTT
[ENA]
¢þ
>WENV182442793
OIKH01001794
[OIKH] human gut metagenome; human gut
206
290
+
Leu
GAG
[ENA]
¢þ
>WENV182442785
OIKH01000941
[OIKH] human gut metagenome; human gut
238
162
-
fMet
CAT
[ENA]
¢þ
>WENV182442764
OIKH01000063
[OIKH] human gut metagenome; human gut
239
164
-
Lys
CTT
[ENA]
¢þ
>WENV182442808
OIKH01003968
[OIKH] human gut metagenome; human gut
272
345
+
Thr
CGT
[ENA]
¢þ
>WENV182442779
OIKH01000715
[OIKH] human gut metagenome; human gut
299
217
-
Leu
TAG
[ENA]
¢þ
>WENV182442811
OIKH01006195
[OIKH] human gut metagenome; human gut
299
387
+
Ser
GGA
[ENA]
¢þ
>WENV182442794
OIKH01001794
[OIKH] human gut metagenome; human gut
306
379
+
Gly
GCC
[ENA]
¢þ
>WENV182442802
OIKH01003002
[OIKH] human gut metagenome; human gut
344
419
+
Pro
TGG
[ENA]
¢þ
>WENV182442788
OIKH01001234
[OIKH] human gut metagenome; human gut
360
434
+
Thr
TGT
[ENA]
¢þ
>WENV182442812
OIKH01006556
[OIKH] human gut metagenome; human gut
385
459
+
Arg
TCT
[ENA]
¢þ
>WENV182442795
OIKH01001794
[OIKH] human gut metagenome; human gut
393
477
+
Leu
TAA
[ENA]
¢þ
>WENV182442797
OIKH01002138
[OIKH] human gut metagenome; human gut
411
335
-
Met
CAT
[ENA]
¢þ
>WENV182442777
OIKH01000517
[OIKH] human gut metagenome; human gut
461
533
+
Arg
CCT
[ENA]
¢þ
>WENV182442796
OIKH01002108
[OIKH] human gut metagenome; human gut
478
562
+
Leu
CAA
[ENA]
¢þ
>WENV182442776
OIKH01000473
[OIKH] human gut metagenome; human gut
532
458
-
Asp
GTC
[ENA]
¢þ
>WENV182442807
OIKH01003937
[OIKH] human gut metagenome; human gut
538
614
+
Pro
CGG
[ENA]
¢þ
>WENV182442803
OIKH01003481
[OIKH] human gut metagenome; human gut
556
481
-
Val
GAC
[ENA]
¢þ
>WENV182442789
OIKH01001323
[OIKH] human gut metagenome; human gut
626
701
+
Gly
GCC
[ENA]
¢þ
>WENV182442799
OIKH01002385
[OIKH] human gut metagenome; human gut
633
559
-
Ala
GGC
[ENA]
¢þ
>WENV182442801
OIKH01002729
[OIKH] human gut metagenome; human gut
635
562
-
fMet
CAT
[ENA]
¢þ
>WENV182442778
OIKH01000660
[OIKH] human gut metagenome; human gut
668
740
+
Cys
GCA
[ENA]
¢þ
>WENV182442800
OIKH01002557
[OIKH] human gut metagenome; human gut
669
743
+
Ile
GAT
[ENA]
¢þ
>WENV182442798
OIKH01002296
[OIKH] human gut metagenome; human gut
694
603
-
Ser
CGA
[ENA]
¢þ
>WENV182442790
OIKH01001323
[OIKH] human gut metagenome; human gut
795
871
+
Met
CAT
[ENA]
¢þ
>WENV182442786
OIKH01000949
[OIKH] human gut metagenome; human gut
798
871
+
Gly
CCC
[ENA]
¢þ
>WENV182442787
OIKH01001040
[OIKH] human gut metagenome; human gut
945
1032
+
Ser
GGA
[ENA]
¢þ
>WENV182442783
OIKH01000750
[OIKH] human gut metagenome; human gut
953
880
-
Pro
CGG
[ENA]
¢þ
>WENV182442791
OIKH01001323
[OIKH] human gut metagenome; human gut
963
1037
+
Glu
TTC
[ENA]
¢þ
>WENV182442782
OIKH01000750
[OIKH] human gut metagenome; human gut
1038
965
-
Phe
GAA
[ENA]
¢þ
>WENV182442773
OIKH01000234
[OIKH] human gut metagenome; human gut
1106
1189
+
Tyr
GTA
[ENA]
¢þ
>WENV182442780
OIKH01000744
[OIKH] human gut metagenome; human gut
1121
1195
+
Pro
TGG
[ENA]
¢þ
>WENV182442775
OIKH01000346
[OIKH] human gut metagenome; human gut
1171
1099
-
Glu
TTC
[ENA]
¢þ
>WENV182442781
OIKH01000744
[OIKH] human gut metagenome; human gut
1225
1296
+
Gly
TCC
[ENA]
¢þ
>WENV182442784
OIKH01000822
[OIKH] human gut metagenome; human gut
1282
1356
+
Ile2
CAT
[ENA]
¢þ
>WENV182442774
OIKH01000234
[OIKH] human gut metagenome; human gut
1303
1375
+
Thr
GGT
[ENA]
¢þ
>WENV182442767
OIKH01000115
[OIKH] human gut metagenome; human gut
1554
1639
+
Ser
TGA
[ENA]
¢þ
>WENV182442768
OIKH01000141
[OIKH] human gut metagenome; human gut
1711
1784
+
Lys
TTT
[ENA]
¢þ
>WENV182442772
OIKH01000211
[OIKH] human gut metagenome; human gut
1975
1900
-
Thr
GGT
[ENA]
¢þ
>WENV182442771
OIKH01000211
[OIKH] human gut metagenome; human gut
2056
1982
-
Gly
TCC
[ENA]
¢þ
>WENV182442763
OIKH01000026
[OIKH] human gut metagenome; human gut
2152
2078
-
Ala
TGC
[ENA]
¢þ
>WENV182442770
OIKH01000211
[OIKH] human gut metagenome; human gut
2257
2173
-
Tyr
GTA
[ENA]
¢þ
>WENV182442762
OIKH01000026
[OIKH] human gut metagenome; human gut
2257
2181
-
Ile
GAT
[ENA]
¢þ
>WENV182442769
OIKH01000211
[OIKH] human gut metagenome; human gut
2341
2266
-
Thr
TGT
[ENA]
¢þ
>WENV182442766
OIKH01000094
[OIKH] human gut metagenome; human gut
2619
2693
+
Ile2
CAT
[ENA]
¢þ
>WENV182442765
OIKH01000064
[OIKH] human gut metagenome; human gut
3707
3634
-
Trp
CCA
[ENA]
¢þ
>WENV182442761
OIKH01000017
[OIKH] human gut metagenome; human gut
4218
4143
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK