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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIKR] human gut metagenome; human gut
HIT:
75 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182444117
OIKR01000135
[OIKR] human gut metagenome; human gut
50
122
+
Thr
GGT
[ENA]
¢þ
>WENV182444188
OIKR01010517
[OIKR] human gut metagenome; human gut
66
149
+
Leu
TAA
[ENA]
¢þ
>WENV182444129
OIKR01000263
[OIKR] human gut metagenome; human gut
75
2
-
Pro
CGG
[ENA]
¢þ
>WENV182444162
OIKR01002565
[OIKR] human gut metagenome; human gut
119
36
-
Leu
CAA
[ENA]
¢þ
>WENV182444173
OIKR01004535
[OIKR] human gut metagenome; human gut
127
39
-
Ser
GGA
[ENA]
¢þ
>WENV182444128
OIKR01000263
[OIKR] human gut metagenome; human gut
161
88
-
Phe
GAA
[ENA]
¢þ
>WENV182444183
OIKR01007984
[OIKR] human gut metagenome; human gut
170
95
-
Val
TAC
[ENA]
¢þ
>WENV182444165
OIKR01002828
[OIKR] human gut metagenome; human gut
184
109
-
Thr
CGT
[ENA]
¢þ
>WENV182444164
OIKR01002729
[OIKR] human gut metagenome; human gut
216
142
-
Cys
GCA
[ENA]
¢þ
>WENV182444187
OIKR01010382
[OIKR] human gut metagenome; human gut
222
297
+
Gly
CCC
[ENA]
¢þ
>WENV182444178
OIKR01005399
[OIKR] human gut metagenome; human gut
228
146
-
Leu
TAG
[ENA]
¢þ
>WENV182444152
OIKR01001973
[OIKR] human gut metagenome; human gut
228
303
+
Trp
CCA
[ENA]
¢þ
>WENV182444134
OIKR01000412
[OIKR] human gut metagenome; human gut
230
302
+
Gln
CTG
[ENA]
¢þ
>WENV182444168
OIKR01002994
[OIKR] human gut metagenome; human gut
242
167
-
Pro
TGG
[ENA]
¢þ
>WENV182444184
OIKR01009072
[OIKR] human gut metagenome; human gut
257
171
-
Leu
AAG
[ENA]
¢þ
>WENV182444139
OIKR01000774
[OIKR] human gut metagenome; human gut
267
342
+
Pro
TGG
[ENA]
¢þ
>WENV182444185
OIKR01009965
[OIKR] human gut metagenome; human gut
303
230
-
Gly
CCC
[ENA]
¢þ
>WENV182444186
OIKR01010233
[OIKR] human gut metagenome; human gut
304
231
-
Gln
CTG
[ENA]
¢þ
>WENV182444140
OIKR01000774
[OIKR] human gut metagenome; human gut
361
431
+
Gly
TCC
[ENA]
¢þ
>WENV182444169
OIKR01003099
[OIKR] human gut metagenome; human gut
408
336
-
Glu
TTC
[ENA]
¢þ
>WENV182444170
OIKR01003212
[OIKR] human gut metagenome; human gut
412
339
-
Lys
TTT
[ENA]
¢þ
>WENV182444181
OIKR01006918
[OIKR] human gut metagenome; human gut
413
339
-
Ala
GGC
[ENA]
¢þ
>WENV182444175
OIKR01004669
[OIKR] human gut metagenome; human gut
429
358
-
Glu
TTC
[ENA]
¢þ
>WENV182444150
OIKR01001880
[OIKR] human gut metagenome; human gut
464
371
-
Ser
GCT
[ENA]
¢þ
>WENV182444177
OIKR01005245
[OIKR] human gut metagenome; human gut
469
545
+
Arg
CCT
[ENA]
¢þ
>WENV182444176
OIKR01004802
[OIKR] human gut metagenome; human gut
473
399
-
Arg
TCT
[ENA]
¢þ
>WENV182444131
OIKR01000344
[OIKR] human gut metagenome; human gut
478
404
-
Asn
GTT
[ENA]
¢þ
>WENV182444153
OIKR01001973
[OIKR] human gut metagenome; human gut
480
554
+
Asp
GTC
[ENA]
¢þ
>WENV182444180
OIKR01006691
[OIKR] human gut metagenome; human gut
535
459
-
Ile
GAT
[ENA]
¢þ
>WENV182444182
OIKR01007913
[OIKR] human gut metagenome; human gut
550
476
-
Cys
GCA
[ENA]
¢þ
>WENV182444154
OIKR01001973
[OIKR] human gut metagenome; human gut
582
657
+
Phe
GAA
[ENA]
¢þ
>WENV182444149
OIKR01001880
[OIKR] human gut metagenome; human gut
584
497
-
Ser
TGA
[ENA]
¢þ
>WENV182444130
OIKR01000344
[OIKR] human gut metagenome; human gut
594
520
-
Glu
CTC
[ENA]
¢þ
>WENV182444174
OIKR01004669
[OIKR] human gut metagenome; human gut
597
521
-
Met
CAT
[ENA]
¢þ
>WENV182444156
OIKR01002192
[OIKR] human gut metagenome; human gut
623
698
+
Ala
GGC
[ENA]
¢þ
>WENV182444179
OIKR01006691
[OIKR] human gut metagenome; human gut
631
558
-
Ala
TGC
[ENA]
¢þ
>WENV182444147
OIKR01001757
[OIKR] human gut metagenome; human gut
657
586
-
Thr
GGT
[ENA]
¢þ
>WENV182444142
OIKR01000920
[OIKR] human gut metagenome; human gut
672
747
+
Thr
GGT
[ENA]
¢þ
>WENV182444171
OIKR01004009
[OIKR] human gut metagenome; human gut
673
746
+
Pro
CGG
[ENA]
¢þ
>WENV182444157
OIKR01002337
[OIKR] human gut metagenome; human gut
675
592
-
Tyr
GTA
[ENA]
¢þ
>WENV182444163
OIKR01002636
[OIKR] human gut metagenome; human gut
684
611
-
Gly
GCC
[ENA]
¢þ
>WENV182444141
OIKR01000873
[OIKR] human gut metagenome; human gut
688
763
+
Pro
GGG
[ENA]
¢þ
>WENV182444155
OIKR01001973
[OIKR] human gut metagenome; human gut
689
764
+
Gly
GCC
[ENA]
¢þ
>WENV182444172
OIKR01004418
[OIKR] human gut metagenome; human gut
699
625
-
Gly
TCC
[ENA]
¢þ
>WENV182444143
OIKR01001026
[OIKR] human gut metagenome; human gut
721
795
+
Asn
GTT
[ENA]
¢þ
>WENV182444167
OIKR01002868
[OIKR] human gut metagenome; human gut
772
686
-
Leu
CAG
[ENA]
¢þ
>WENV182444161
OIKR01002394
[OIKR] human gut metagenome; human gut
792
718
-
Lys
TTT
[ENA]
¢þ
>WENV182444136
OIKR01000428
[OIKR] human gut metagenome; human gut
809
883
+
Thr
TGT
[ENA]
¢þ
>WENV182444146
OIKR01001694
[OIKR] human gut metagenome; human gut
816
887
+
Gln
TTG
[ENA]
¢þ
>WENV182444151
OIKR01001912
[OIKR] human gut metagenome; human gut
821
893
+
Arg
CCG
[ENA]
¢þ
>WENV182444160
OIKR01002394
[OIKR] human gut metagenome; human gut
880
809
-
Gln
TTG
[ENA]
¢þ
>WENV182444137
OIKR01000437
[OIKR] human gut metagenome; human gut
903
831
-
Glu
CTC
[ENA]
¢þ
>WENV182444159
OIKR01002394
[OIKR] human gut metagenome; human gut
1022
948
-
His
GTG
[ENA]
¢þ
>WENV182444166
OIKR01002868
[OIKR] human gut metagenome; human gut
1047
973
-
His
GTG
[ENA]
¢þ
>WENV182444148
OIKR01001766
[OIKR] human gut metagenome; human gut
1099
1175
+
Arg
ACG
[ENA]
¢þ
>WENV182444144
OIKR01001124
[OIKR] human gut metagenome; human gut
1129
1058
-
Gln
CTG
[ENA]
¢þ
>WENV182444158
OIKR01002394
[OIKR] human gut metagenome; human gut
1144
1069
-
Arg
TCT
[ENA]
¢þ
>WENV182444114
OIKR01000056
[OIKR] human gut metagenome; human gut
1224
1136
-
Ser
GGA
[ENA]
¢þ
>WENV182444138
OIKR01000725
[OIKR] human gut metagenome; human gut
1264
1338
+
Met
CAT
[ENA]
¢þ
>WENV182444120
OIKR01000156
[OIKR] human gut metagenome; human gut
1299
1373
+
Val
TAC
[ENA]
¢þ
>WENV182444132
OIKR01000366
[OIKR] human gut metagenome; human gut
1381
1308
-
Lys
CTT
[ENA]
¢þ
>WENV182444121
OIKR01000156
[OIKR] human gut metagenome; human gut
1398
1470
+
Thr
TGT
[ENA]
¢þ
>WENV182444124
OIKR01000204
[OIKR] human gut metagenome; human gut
1403
1476
+
Ile
GAT
[ENA]
¢þ
>WENV182444118
OIKR01000135
[OIKR] human gut metagenome; human gut
1411
1484
+
Trp
CCA
[ENA]
¢þ
>WENV182444135
OIKR01000421
[OIKR] human gut metagenome; human gut
1449
1521
+
Arg
CCT
[ENA]
¢þ
>WENV182444122
OIKR01000156
[OIKR] human gut metagenome; human gut
1499
1582
+
Tyr
GTA
[ENA]
¢þ
>WENV182444145
OIKR01001286
[OIKR] human gut metagenome; human gut
1531
1605
+
Pro
TGG
[ENA]
¢þ
>WENV182444126
OIKR01000233
[OIKR] human gut metagenome; human gut
1665
1739
+
Ile
GAT
[ENA]
¢þ
>WENV182444127
OIKR01000233
[OIKR] human gut metagenome; human gut
1756
1830
+
Ala
TGC
[ENA]
¢þ
>WENV182444133
OIKR01000386
[OIKR] human gut metagenome; human gut
2285
2210
-
Lys
CTT
[ENA]
¢þ
>WENV182444125
OIKR01000204
[OIKR] human gut metagenome; human gut
2742
2662
-
Leu
TAG
[ENA]
¢þ
>WENV182444123
OIKR01000182
[OIKR] human gut metagenome; human gut
3024
2950
-
Arg
CCG
[ENA]
¢þ
>WENV182444119
OIKR01000143
[OIKR] human gut metagenome; human gut
3753
3678
-
Val
GAC
[ENA]
¢þ
>WENV182444115
OIKR01000060
[OIKR] human gut metagenome; human gut
3965
3874
-
Ser
CGA
[ENA]
¢þ
>WENV182444116
OIKR01000084
[OIKR] human gut metagenome; human gut
4217
4132
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK