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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIKX] human gut metagenome; human gut
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182445548
OIKX01001760
[OIKX] human gut metagenome; human gut
35
111
+
Arg
CCT
[ENA]
¢þ
>WENV182445565
OIKX01003928
[OIKX] human gut metagenome; human gut
49
124
+
Ile2
CAT
[ENA]
¢þ
>WENV182445531
OIKX01000709
[OIKX] human gut metagenome; human gut
63
138
+
fMet
CAT
[ENA]
¢þ
>WENV182445579
OIKX01007352
[OIKX] human gut metagenome; human gut
66
140
+
Arg
TCT
[ENA]
¢þ
>WENV182445573
OIKX01005479
[OIKX] human gut metagenome; human gut
72
-1
-
Ala
GGC
[ENA]
¢þ
>WENV182445580
OIKX01009452
[OIKX] human gut metagenome; human gut
72
145
+
Thr
CGT
[ENA]
¢þ
>WENV182445560
OIKX01003041
[OIKX] human gut metagenome; human gut
74
1
-
Val
GAC
[ENA]
¢þ
>WENV182445542
OIKX01001375
[OIKX] human gut metagenome; human gut
75
154
+
Leu
CAA
[ENA]
¢þ
>WENV182445532
OIKX01000746
[OIKX] human gut metagenome; human gut
82
156
+
fMet
CAT
[ENA]
¢þ
>WENV182445576
OIKX01006810
[OIKX] human gut metagenome; human gut
85
9
-
Ile2
CAT
[ENA]
¢þ
>WENV182445501
OIKX01000027
[OIKX] human gut metagenome; human gut
93
21
-
Trp
CCA
[ENA]
¢þ
>WENV182445546
OIKX01001594
[OIKX] human gut metagenome; human gut
134
58
-
Asp
GTC
[ENA]
¢þ
>WENV182445578
OIKX01006919
[OIKX] human gut metagenome; human gut
209
127
-
Leu
GAG
[ENA]
¢þ
>WENV182445571
OIKX01004778
[OIKX] human gut metagenome; human gut
215
290
+
Arg
CCG
[ENA]
¢þ
>WENV182445545
OIKX01001594
[OIKX] human gut metagenome; human gut
239
164
-
Gly
GCC
[ENA]
¢þ
>WENV182445558
OIKX01002811
[OIKX] human gut metagenome; human gut
255
328
+
Gln
TTG
[ENA]
¢þ
>WENV182445509
OIKX01000290
[OIKX] human gut metagenome; human gut
261
337
+
Met
CAT
[ENA]
¢þ
>WENV182445575
OIKX01006432
[OIKX] human gut metagenome; human gut
288
379
+
Ser
GGA
[ENA]
¢þ
>WENV182445544
OIKX01001594
[OIKX] human gut metagenome; human gut
355
280
-
Phe
GAA
[ENA]
¢þ
>WENV182445581
OIKX01009474
[OIKX] human gut metagenome; human gut
383
307
-
Val
CAC
[ENA]
¢þ
>WENV182445567
OIKX01004130
[OIKX] human gut metagenome; human gut
391
479
+
Ser
GGA
[ENA]
¢þ
>WENV182445582
OIKX01010206
[OIKX] human gut metagenome; human gut
411
338
-
fMet
CAT
[ENA]
¢þ
>WENV182445569
OIKX01004244
[OIKX] human gut metagenome; human gut
425
498
+
Gln
CTG
[ENA]
¢þ
>WENV182445510
OIKX01000290
[OIKX] human gut metagenome; human gut
429
503
+
Glu
TTC
[ENA]
¢þ
>WENV182445551
OIKX01001912
[OIKX] human gut metagenome; human gut
444
351
-
Ser
GCT
[ENA]
¢þ
>WENV182445507
OIKX01000220
[OIKX] human gut metagenome; human gut
445
518
+
Lys
TTT
[ENA]
¢þ
>WENV182445572
OIKX01004822
[OIKX] human gut metagenome; human gut
446
374
-
Cys
GCA
[ENA]
¢þ
>WENV182445568
OIKX01004212
[OIKX] human gut metagenome; human gut
447
374
-
Gly
GCC
[ENA]
¢þ
>WENV182445566
OIKX01003931
[OIKX] human gut metagenome; human gut
462
536
+
Thr
TGT
[ENA]
¢þ
>WENV182445564
OIKX01003883
[OIKX] human gut metagenome; human gut
467
554
+
Ser
GCT
[ENA]
¢þ
>WENV182445536
OIKX01000958
[OIKX] human gut metagenome; human gut
470
545
+
Pro
GGG
[ENA]
¢þ
>WENV182445563
OIKX01003218
[OIKX] human gut metagenome; human gut
507
433
-
Met
CAT
[ENA]
¢þ
>WENV182445574
OIKX01005740
[OIKX] human gut metagenome; human gut
512
440
-
Glu
TTC
[ENA]
¢þ
>WENV182445500
OIKX01000025
[OIKX] human gut metagenome; human gut
515
435
-
Leu
TAG
[ENA]
¢þ
>WENV182445553
OIKX01002082
[OIKX] human gut metagenome; human gut
526
597
+
Thr
GGT
[ENA]
¢þ
>WENV182445570
OIKX01004244
[OIKX] human gut metagenome; human gut
533
606
+
Pro
CGG
[ENA]
¢þ
>WENV182445561
OIKX01003072
[OIKX] human gut metagenome; human gut
557
641
+
Leu
CAG
[ENA]
¢þ
>WENV182445550
OIKX01001912
[OIKX] human gut metagenome; human gut
564
477
-
Ser
TGA
[ENA]
¢þ
>WENV182445538
OIKX01001013
[OIKX] human gut metagenome; human gut
574
502
-
Thr
CGT
[ENA]
¢þ
>WENV182445527
OIKX01000495
[OIKX] human gut metagenome; human gut
613
687
+
Asn
GTT
[ENA]
¢þ
>WENV182445541
OIKX01001280
[OIKX] human gut metagenome; human gut
645
573
-
Gln
CTG
[ENA]
¢þ
>WENV182445577
OIKX01006898
[OIKX] human gut metagenome; human gut
646
573
-
Gln
TTG
[ENA]
¢þ
>WENV182445557
OIKX01002501
[OIKX] human gut metagenome; human gut
666
595
-
Cys
GCA
[ENA]
¢þ
>WENV182445549
OIKX01001782
[OIKX] human gut metagenome; human gut
667
582
-
Tyr
GTA
[ENA]
¢þ
>WENV182445559
OIKX01002842
[OIKX] human gut metagenome; human gut
685
611
-
Ile2
CAT
[ENA]
¢þ
>WENV182445552
OIKX01001989
[OIKX] human gut metagenome; human gut
694
777
+
Leu
CAA
[ENA]
¢þ
>WENV182445540
OIKX01001280
[OIKX] human gut metagenome; human gut
739
653
-
Ser
TGA
[ENA]
¢þ
>WENV182445562
OIKX01003079
[OIKX] human gut metagenome; human gut
764
841
+
Arg
CCT
[ENA]
¢þ
>WENV182445556
OIKX01002501
[OIKX] human gut metagenome; human gut
766
695
-
Glu
TTC
[ENA]
¢þ
>WENV182445504
OIKX01000069
[OIKX] human gut metagenome; human gut
794
868
+
Pro
TGG
[ENA]
¢þ
>WENV182445522
OIKX01000399
[OIKX] human gut metagenome; human gut
825
752
-
Ile
GAT
[ENA]
¢þ
>WENV182445512
OIKX01000329
[OIKX] human gut metagenome; human gut
860
934
+
Thr
TGT
[ENA]
¢þ
>WENV182445555
OIKX01002501
[OIKX] human gut metagenome; human gut
871
797
-
Asn
GTT
[ENA]
¢þ
>WENV182445547
OIKX01001724
[OIKX] human gut metagenome; human gut
972
1045
+
Ala
CGC
[ENA]
¢þ
>WENV182445513
OIKX01000329
[OIKX] human gut metagenome; human gut
977
1060
+
Tyr
GTA
[ENA]
¢þ
>WENV182445554
OIKX01002146
[OIKX] human gut metagenome; human gut
978
1051
+
Lys
CTT
[ENA]
¢þ
>WENV182445539
OIKX01001204
[OIKX] human gut metagenome; human gut
997
1070
+
Pro
CGG
[ENA]
¢þ
>WENV182445506
OIKX01000188
[OIKX] human gut metagenome; human gut
1061
1144
+
Tyr
GTA
[ENA]
¢þ
>WENV182445537
OIKX01000964
[OIKX] human gut metagenome; human gut
1092
1019
-
Trp
CCA
[ENA]
¢þ
>WENV182445514
OIKX01000329
[OIKX] human gut metagenome; human gut
1154
1226
+
Thr
GGT
[ENA]
¢þ
>WENV182445543
OIKX01001533
[OIKX] human gut metagenome; human gut
1161
1077
-
Leu
CAA
[ENA]
¢þ
>WENV182445503
OIKX01000038
[OIKX] human gut metagenome; human gut
1209
1134
-
Lys
CTT
[ENA]
¢þ
>WENV182445502
OIKX01000038
[OIKX] human gut metagenome; human gut
1287
1213
-
Glu
CTC
[ENA]
¢þ
>WENV182445511
OIKX01000307
[OIKX] human gut metagenome; human gut
1470
1387
-
Leu
CAG
[ENA]
¢þ
>WENV182445516
OIKX01000358
[OIKX] human gut metagenome; human gut
1473
1548
+
Pro
TGG
[ENA]
¢þ
>WENV182445535
OIKX01000818
[OIKX] human gut metagenome; human gut
1533
1608
+
Thr
GGT
[ENA]
¢þ
>WENV182445517
OIKX01000358
[OIKX] human gut metagenome; human gut
1567
1637
+
Gly
TCC
[ENA]
¢þ
>WENV182445524
OIKX01000409
[OIKX] human gut metagenome; human gut
1644
1559
-
Leu
TAA
[ENA]
¢þ
>WENV182445533
OIKX01000800
[OIKX] human gut metagenome; human gut
1666
1740
+
Ile
GAT
[ENA]
¢þ
>WENV182445518
OIKX01000358
[OIKX] human gut metagenome; human gut
1669
1743
+
Arg
TCT
[ENA]
¢þ
>WENV182445523
OIKX01000409
[OIKX] human gut metagenome; human gut
1733
1660
-
Gly
GCC
[ENA]
¢þ
>WENV182445519
OIKX01000358
[OIKX] human gut metagenome; human gut
1748
1822
+
His
GTG
[ENA]
¢þ
>WENV182445534
OIKX01000800
[OIKX] human gut metagenome; human gut
1757
1831
+
Ala
TGC
[ENA]
¢þ
>WENV182445520
OIKX01000358
[OIKX] human gut metagenome; human gut
1841
1914
+
Gln
TTG
[ENA]
¢þ
>WENV182445508
OIKX01000258
[OIKX] human gut metagenome; human gut
1863
1791
-
Glu
CTC
[ENA]
¢þ
>WENV182445521
OIKX01000358
[OIKX] human gut metagenome; human gut
1930
2004
+
Lys
TTT
[ENA]
¢þ
>WENV182445525
OIKX01000463
[OIKX] human gut metagenome; human gut
1990
1915
-
Pro
TGG
[ENA]
¢þ
>WENV182445529
OIKX01000503
[OIKX] human gut metagenome; human gut
2024
1953
-
Cys
GCA
[ENA]
¢þ
>WENV182445526
OIKX01000468
[OIKX] human gut metagenome; human gut
2064
1979
-
Ser
TGA
[ENA]
¢þ
>WENV182445530
OIKX01000507
[OIKX] human gut metagenome; human gut
2083
2157
+
Arg
CCG
[ENA]
¢þ
>WENV182445528
OIKX01000503
[OIKX] human gut metagenome; human gut
2116
2042
-
Asn
GTT
[ENA]
¢þ
>WENV182445515
OIKX01000342
[OIKX] human gut metagenome; human gut
2519
2444
-
Arg
ACG
[ENA]
¢þ
>WENV182445505
OIKX01000071
[OIKX] human gut metagenome; human gut
3036
2964
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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