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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OILV] human gut metagenome; human gut
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182450315
OILV01001981
[OILV] human gut metagenome; human gut
2
77
+
Phe
GAA
[ENA]
¢þ
>WENV182450316
OILV01001981
[OILV] human gut metagenome; human gut
83
157
+
Gly
GCC
[ENA]
¢þ
>WENV182450291
OILV01000304
[OILV] human gut metagenome; human gut
86
11
-
Lys
CTT
[ENA]
¢þ
>WENV182450310
OILV01001256
[OILV] human gut metagenome; human gut
91
15
-
Val
GAC
[ENA]
¢þ
>WENV182450298
OILV01000460
[OILV] human gut metagenome; human gut
93
169
+
Val
TAC
[ENA]
¢þ
>WENV182450333
OILV01002378
[OILV] human gut metagenome; human gut
97
169
+
Glu
CTC
[ENA]
¢þ
>WENV182450314
OILV01001912
[OILV] human gut metagenome; human gut
104
178
+
Asn
GTT
[ENA]
¢þ
>WENV182450337
OILV01003003
[OILV] human gut metagenome; human gut
106
35
-
Gln
CTG
[ENA]
¢þ
>WENV182450330
OILV01002360
[OILV] human gut metagenome; human gut
131
206
+
Gly
GCC
[ENA]
¢þ
>WENV182450322
OILV01002143
[OILV] human gut metagenome; human gut
141
216
+
Pro
TGG
[ENA]
¢þ
>WENV182450297
OILV01000452
[OILV] human gut metagenome; human gut
151
68
-
Leu
CAG
[ENA]
¢þ
>WENV182450308
OILV01001100
[OILV] human gut metagenome; human gut
151
226
+
Ala
TGC
[ENA]
¢þ
>WENV182450317
OILV01001981
[OILV] human gut metagenome; human gut
165
240
+
Asn
GTT
[ENA]
¢þ
>WENV182450338
OILV01003476
[OILV] human gut metagenome; human gut
174
249
+
Pro
TGG
[ENA]
¢þ
>WENV182450334
OILV01002642
[OILV] human gut metagenome; human gut
190
99
-
Ser
GGA
[ENA]
¢þ
>WENV182450312
OILV01001800
[OILV] human gut metagenome; human gut
196
271
+
Asp
GTC
[ENA]
¢þ
>WENV182450304
OILV01000774
[OILV] human gut metagenome; human gut
212
128
-
Leu
CAA
[ENA]
¢þ
>WENV182450323
OILV01002143
[OILV] human gut metagenome; human gut
235
305
+
Gly
TCC
[ENA]
¢þ
>WENV182450331
OILV01002360
[OILV] human gut metagenome; human gut
236
312
+
Asp
GTC
[ENA]
¢þ
>WENV182450341
OILV01003795
[OILV] human gut metagenome; human gut
250
167
-
Tyr
GTA
[ENA]
¢þ
>WENV182450296
OILV01000452
[OILV] human gut metagenome; human gut
271
198
-
Gly
GCC
[ENA]
¢þ
>WENV182450318
OILV01001981
[OILV] human gut metagenome; human gut
276
350
+
Gln
CTG
[ENA]
¢þ
>WENV182450289
OILV01000263
[OILV] human gut metagenome; human gut
298
223
-
Pro
TGG
[ENA]
¢þ
>WENV182450313
OILV01001800
[OILV] human gut metagenome; human gut
300
373
+
Val
TAC
[ENA]
¢þ
>WENV182450329
OILV01002309
[OILV] human gut metagenome; human gut
308
395
+
Ser
TGA
[ENA]
¢þ
>WENV182450335
OILV01002660
[OILV] human gut metagenome; human gut
314
242
-
Trp
CCA
[ENA]
¢þ
>WENV182450332
OILV01002360
[OILV] human gut metagenome; human gut
316
391
+
Thr
GGT
[ENA]
¢þ
>WENV182450340
OILV01003795
[OILV] human gut metagenome; human gut
337
265
-
Thr
TGT
[ENA]
¢þ
>WENV182450324
OILV01002143
[OILV] human gut metagenome; human gut
356
431
+
Arg
TCT
[ENA]
¢þ
>WENV182450336
OILV01002703
[OILV] human gut metagenome; human gut
359
430
+
Gln
CTG
[ENA]
¢þ
>WENV182450319
OILV01001981
[OILV] human gut metagenome; human gut
359
433
+
Lys
TTT
[ENA]
¢þ
>WENV182450271
OILV01000157
[OILV] human gut metagenome; human gut
370
444
+
Ala
GGC
[ENA]
¢þ
>WENV182450326
OILV01002168
[OILV] human gut metagenome; human gut
403
313
-
Ser
GGA
[ENA]
¢þ
>WENV182450320
OILV01001981
[OILV] human gut metagenome; human gut
441
515
+
Glu
TTC
[ENA]
¢þ
>WENV182450339
OILV01003795
[OILV] human gut metagenome; human gut
444
371
-
Glu
TTC
[ENA]
¢þ
>WENV182450325
OILV01002143
[OILV] human gut metagenome; human gut
479
555
+
His
GTG
[ENA]
¢þ
>WENV182450342
OILV01003850
[OILV] human gut metagenome; human gut
488
402
-
Leu
CAG
[ENA]
¢þ
>WENV182450321
OILV01001981
[OILV] human gut metagenome; human gut
521
596
+
Val
TAC
[ENA]
¢þ
>WENV182450327
OILV01002185
[OILV] human gut metagenome; human gut
522
595
+
Arg
CCG
[ENA]
¢þ
>WENV182450328
OILV01002259
[OILV] human gut metagenome; human gut
556
465
-
Ser
CGA
[ENA]
¢þ
>WENV182450311
OILV01001280
[OILV] human gut metagenome; human gut
572
500
-
Trp
CCA
[ENA]
¢þ
>WENV182450309
OILV01001158
[OILV] human gut metagenome; human gut
606
520
-
Leu
CAG
[ENA]
¢þ
>WENV182450306
OILV01000845
[OILV] human gut metagenome; human gut
644
731
+
Ser
GCT
[ENA]
¢þ
>WENV182450295
OILV01000343
[OILV] human gut metagenome; human gut
892
967
+
Gly
CCC
[ENA]
¢þ
>WENV182450307
OILV01000845
[OILV] human gut metagenome; human gut
1086
1160
+
Glu
CTC
[ENA]
¢þ
>WENV182450265
OILV01000088
[OILV] human gut metagenome; human gut
1105
1030
-
Lys
TTT
[ENA]
¢þ
>WENV182450305
OILV01000823
[OILV] human gut metagenome; human gut
1210
1286
+
Met
CAT
[ENA]
¢þ
>WENV182450303
OILV01000626
[OILV] human gut metagenome; human gut
1218
1291
+
Lys
CTT
[ENA]
¢þ
>WENV182450300
OILV01000479
[OILV] human gut metagenome; human gut
1350
1276
-
Ala
TGC
[ENA]
¢þ
>WENV182450294
OILV01000341
[OILV] human gut metagenome; human gut
1390
1319
-
Gln
TTG
[ENA]
¢þ
>WENV182450299
OILV01000479
[OILV] human gut metagenome; human gut
1441
1367
-
Ile
GAT
[ENA]
¢þ
>WENV182450264
OILV01000064
[OILV] human gut metagenome; human gut
1636
1710
+
Asp
GTC
[ENA]
¢þ
>WENV182450290
OILV01000280
[OILV] human gut metagenome; human gut
2207
2281
+
Thr
TGT
[ENA]
¢þ
>WENV182450302
OILV01000521
[OILV] human gut metagenome; human gut
2299
2384
+
Ser
TGA
[ENA]
¢þ
>WENV182450301
OILV01000501
[OILV] human gut metagenome; human gut
2709
2783
+
Cys
GCA
[ENA]
¢þ
>WENV182450292
OILV01000310
[OILV] human gut metagenome; human gut
3673
3600
-
Trp
CCA
[ENA]
¢þ
>WENV182450267
OILV01000094
[OILV] human gut metagenome; human gut
3704
3616
-
Ser
GGA
[ENA]
¢þ
>WENV182450281
OILV01000189
[OILV] human gut metagenome; human gut
4881
4807
-
Thr
TGT
[ENA]
¢þ
>WENV182450280
OILV01000189
[OILV] human gut metagenome; human gut
4959
4886
-
His
GTG
[ENA]
¢þ
>WENV182450279
OILV01000189
[OILV] human gut metagenome; human gut
5036
4965
-
Arg
TCG
[ENA]
¢þ
>WENV182450278
OILV01000189
[OILV] human gut metagenome; human gut
5120
5049
-
Gln
TTG
[ENA]
¢þ
>WENV182450293
OILV01000331
[OILV] human gut metagenome; human gut
5121
5033
-
Ser
GGA
[ENA]
¢þ
>WENV182450277
OILV01000189
[OILV] human gut metagenome; human gut
5311
5238
-
Phe
GAA
[ENA]
¢þ
>WENV182450287
OILV01000204
[OILV] human gut metagenome; human gut
5314
5232
-
Tyr
GTA
[ENA]
¢þ
>WENV182450276
OILV01000189
[OILV] human gut metagenome; human gut
5391
5320
-
Gln
CTG
[ENA]
¢þ
>WENV182450275
OILV01000189
[OILV] human gut metagenome; human gut
5483
5397
-
Ser
TGA
[ENA]
¢þ
>WENV182450286
OILV01000204
[OILV] human gut metagenome; human gut
5550
5478
-
Glu
TTC
[ENA]
¢þ
>WENV182450274
OILV01000189
[OILV] human gut metagenome; human gut
5565
5490
-
Arg
ACG
[ENA]
¢þ
>WENV182450270
OILV01000144
[OILV] human gut metagenome; human gut
5585
5513
-
Arg
CCG
[ENA]
¢þ
>WENV182450285
OILV01000204
[OILV] human gut metagenome; human gut
5626
5555
-
Gln
TTG
[ENA]
¢þ
>WENV182450273
OILV01000189
[OILV] human gut metagenome; human gut
5656
5571
-
Ser
GCT
[ENA]
¢þ
>WENV182450284
OILV01000204
[OILV] human gut metagenome; human gut
5704
5631
-
Trp
CCA
[ENA]
¢þ
>WENV182450283
OILV01000204
[OILV] human gut metagenome; human gut
5784
5711
-
Asn
GTT
[ENA]
¢þ
>WENV182450282
OILV01000204
[OILV] human gut metagenome; human gut
6075
6002
-
fMet
CAT
[ENA]
¢þ
>WENV182450262
OILV01000049
[OILV] human gut metagenome; human gut
7117
7042
-
Pro
GGG
[ENA]
¢þ
>WENV182450288
OILV01000235
[OILV] human gut metagenome; human gut
7537
7611
+
Asn
GTT
[ENA]
¢þ
>WENV182450266
OILV01000091
[OILV] human gut metagenome; human gut
7646
7720
+
Arg
TCT
[ENA]
¢þ
>WENV182450272
OILV01000183
[OILV] human gut metagenome; human gut
8969
9043
+
Met
CAT
[ENA]
¢þ
>WENV182450268
OILV01000111
[OILV] human gut metagenome; human gut
9556
9482
-
Ile2
CAT
[ENA]
¢þ
>WENV182450263
OILV01000061
[OILV] human gut metagenome; human gut
9675
9602
-
fMet
CAT
[ENA]
¢þ
>WENV182450269
OILV01000127
[OILV] human gut metagenome; human gut
11608
11690
+
Leu
TAG
[ENA]
¢þ
>WENV182450255
OILV01000008
[OILV] human gut metagenome; human gut
15897
15969
+
Arg
CCT
[ENA]
¢þ
>WENV182450261
OILV01000037
[OILV] human gut metagenome; human gut
17209
17134
-
Phe
GAA
[ENA]
¢þ
>WENV182450260
OILV01000037
[OILV] human gut metagenome; human gut
17390
17463
+
Pro
CGG
[ENA]
¢þ
>WENV182450259
OILV01000021
[OILV] human gut metagenome; human gut
23508
23435
-
Trp
CCA
[ENA]
¢þ
>WENV182450258
OILV01000021
[OILV] human gut metagenome; human gut
24873
24801
-
Thr
GGT
[ENA]
¢þ
>WENV182450257
OILV01000021
[OILV] human gut metagenome; human gut
25049
24966
-
Tyr
GTA
[ENA]
¢þ
>WENV182450256
OILV01000021
[OILV] human gut metagenome; human gut
25166
25092
-
Thr
TGT
[ENA]
¢þ
>WENV182450254
OILV01000006
[OILV] human gut metagenome; human gut
35348
35276
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK