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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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|
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HOW TO USE
tRNA gene List
[OIMD] human gut metagenome; human gut
HIT:
153 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182452256
OIMD01000046
[OIMD] human gut metagenome; human gut
1
75
+
Thr
TGT
[ENA]
¢þ
>WENV182452366
OIMD01007443
[OIMD] human gut metagenome; human gut
12
87
+
Trp
CCA
[ENA]
¢þ
>WENV182452350
OIMD01004856
[OIMD] human gut metagenome; human gut
45
120
+
Arg
ACG
[ENA]
¢þ
>WENV182452351
OIMD01004882
[OIMD] human gut metagenome; human gut
54
128
+
Lys
TTT
[ENA]
¢þ
>WENV182452379
OIMD01009391
[OIMD] human gut metagenome; human gut
76
149
+
Arg
CCG
[ENA]
¢þ
>WENV182452365
OIMD01007362
[OIMD] human gut metagenome; human gut
93
167
+
Glu
CTC
[ENA]
¢þ
>WENV182452361
OIMD01006908
[OIMD] human gut metagenome; human gut
94
169
+
Val
CAC
[ENA]
¢þ
>WENV182452360
OIMD01006844
[OIMD] human gut metagenome; human gut
96
21
-
Thr
GGT
[ENA]
¢þ
>WENV182452334
OIMD01002606
[OIMD] human gut metagenome; human gut
101
25
-
Val
GAC
[ENA]
¢þ
>WENV182452333
OIMD01002426
[OIMD] human gut metagenome; human gut
105
20
-
Leu
GAG
[ENA]
¢þ
>WENV182452335
OIMD01002648
[OIMD] human gut metagenome; human gut
109
34
-
Lys
CTT
[ENA]
¢þ
>WENV182452357
OIMD01006540
[OIMD] human gut metagenome; human gut
112
41
-
Glu
TTC
[ENA]
¢þ
>WENV182452345
OIMD01003419
[OIMD] human gut metagenome; human gut
118
43
-
Ile2
CAT
[ENA]
¢þ
>WENV182452343
OIMD01003124
[OIMD] human gut metagenome; human gut
128
54
-
Lys
CTT
[ENA]
¢þ
>WENV182452352
OIMD01004882
[OIMD] human gut metagenome; human gut
132
206
+
Phe
GAA
[ENA]
¢þ
>WENV182452375
OIMD01009003
[OIMD] human gut metagenome; human gut
134
59
-
Asn
GTT
[ENA]
¢þ
>WENV182452308
OIMD01001213
[OIMD] human gut metagenome; human gut
135
208
+
Lys
TTT
[ENA]
¢þ
>WENV182452362
OIMD01007019
[OIMD] human gut metagenome; human gut
163
251
+
Ser
CGA
[ENA]
¢þ
>WENV182452378
OIMD01009110
[OIMD] human gut metagenome; human gut
164
236
+
Ala
CGC
[ENA]
¢þ
>WENV182452354
OIMD01005995
[OIMD] human gut metagenome; human gut
167
255
+
Ser
TGA
[ENA]
¢þ
>WENV182452383
OIMD01011351
[OIMD] human gut metagenome; human gut
172
97
-
Thr
GGT
[ENA]
¢þ
>WENV182452299
OIMD01000880
[OIMD] human gut metagenome; human gut
175
103
-
Thr
GGT
[ENA]
¢þ
>WENV182452369
OIMD01007477
[OIMD] human gut metagenome; human gut
176
95
-
Tyr
GTA
[ENA]
¢þ
>WENV182452359
OIMD01006844
[OIMD] human gut metagenome; human gut
176
100
-
Asp
GTC
[ENA]
¢þ
>WENV182452355
OIMD01006232
[OIMD] human gut metagenome; human gut
188
261
+
Gly
CCC
[ENA]
¢þ
>WENV182452252
OIMD01000035
[OIMD] human gut metagenome; human gut
190
264
+
Ile
GAT
[ENA]
¢þ
>WENV182452270
OIMD01000131
[OIMD] human gut metagenome; human gut
197
122
-
Val
TAC
[ENA]
¢þ
>WENV182452251
OIMD01000034
[OIMD] human gut metagenome; human gut
205
132
-
Thr
CGT
[ENA]
¢þ
>WENV182452332
OIMD01002426
[OIMD] human gut metagenome; human gut
208
122
-
Leu
CAG
[ENA]
¢þ
>WENV182452263
OIMD01000075
[OIMD] human gut metagenome; human gut
232
161
-
Gln
CTG
[ENA]
¢þ
>WENV182452358
OIMD01006844
[OIMD] human gut metagenome; human gut
255
180
-
Trp
CCA
[ENA]
¢þ
>WENV182452368
OIMD01007477
[OIMD] human gut metagenome; human gut
263
190
-
Val
TAC
[ENA]
¢þ
>WENV182452317
OIMD01001399
[OIMD] human gut metagenome; human gut
281
357
+
Pro
CGG
[ENA]
¢þ
>WENV182452376
OIMD01009085
[OIMD] human gut metagenome; human gut
292
367
+
Asp
GTC
[ENA]
¢þ
>WENV182452349
OIMD01003971
[OIMD] human gut metagenome; human gut
295
219
-
Arg
TCT
[ENA]
¢þ
>WENV182452327
OIMD01001530
[OIMD] human gut metagenome; human gut
305
232
-
Gly
GCC
[ENA]
¢þ
>WENV182452374
OIMD01008629
[OIMD] human gut metagenome; human gut
311
235
-
Arg
CCT
[ENA]
¢þ
>WENV182452346
OIMD01003831
[OIMD] human gut metagenome; human gut
348
423
+
Lys
TTT
[ENA]
¢þ
>WENV182452337
OIMD01002727
[OIMD] human gut metagenome; human gut
356
430
+
Asn
GTT
[ENA]
¢þ
>WENV182452371
OIMD01007528
[OIMD] human gut metagenome; human gut
358
285
-
Ala
TGC
[ENA]
¢þ
>WENV182452253
OIMD01000035
[OIMD] human gut metagenome; human gut
365
439
+
Ala
TGC
[ENA]
¢þ
>WENV182452367
OIMD01007477
[OIMD] human gut metagenome; human gut
369
294
-
Asp
GTC
[ENA]
¢þ
>WENV182452382
OIMD01010404
[OIMD] human gut metagenome; human gut
369
444
+
Gly
GCC
[ENA]
¢þ
>WENV182452342
OIMD01003087
[OIMD] human gut metagenome; human gut
379
306
-
Arg
CCG
[ENA]
¢þ
>WENV182452380
OIMD01009969
[OIMD] human gut metagenome; human gut
380
308
-
Arg
CCG
[ENA]
¢þ
>WENV182452372
OIMD01007616
[OIMD] human gut metagenome; human gut
386
313
-
Gly
CCC
[ENA]
¢þ
>WENV182452255
OIMD01000045
[OIMD] human gut metagenome; human gut
405
331
-
Ala
GGC
[ENA]
¢þ
>WENV182452269
OIMD01000131
[OIMD] human gut metagenome; human gut
406
332
-
Asn
GTT
[ENA]
¢þ
>WENV182452331
OIMD01001767
[OIMD] human gut metagenome; human gut
414
329
-
Leu
AAG
[ENA]
¢þ
>WENV182452381
OIMD01010322
[OIMD] human gut metagenome; human gut
417
344
-
Lys
CTT
[ENA]
¢þ
>WENV182452364
OIMD01007126
[OIMD] human gut metagenome; human gut
429
501
+
Gln
CTG
[ENA]
¢þ
>WENV182452338
OIMD01002727
[OIMD] human gut metagenome; human gut
433
507
+
Glu
TTC
[ENA]
¢þ
>WENV182452370
OIMD01007528
[OIMD] human gut metagenome; human gut
450
377
-
Ile
GAT
[ENA]
¢þ
>WENV182452377
OIMD01009085
[OIMD] human gut metagenome; human gut
456
532
+
Asp
GTC
[ENA]
¢þ
>WENV182452356
OIMD01006408
[OIMD] human gut metagenome; human gut
475
558
+
Leu
CAG
[ENA]
¢þ
>WENV182452340
OIMD01002744
[OIMD] human gut metagenome; human gut
515
587
+
Glu
CTC
[ENA]
¢þ
>WENV182452339
OIMD01002727
[OIMD] human gut metagenome; human gut
517
592
+
Val
TAC
[ENA]
¢þ
>WENV182452303
OIMD01001120
[OIMD] human gut metagenome; human gut
526
599
+
Glu
TTC
[ENA]
¢þ
>WENV182452363
OIMD01007088
[OIMD] human gut metagenome; human gut
545
459
-
Leu
GAG
[ENA]
¢þ
>WENV182452348
OIMD01003954
[OIMD] human gut metagenome; human gut
560
633
+
Gly
CCC
[ENA]
¢þ
>WENV182452373
OIMD01007841
[OIMD] human gut metagenome; human gut
571
500
-
Gly
TCC
[ENA]
¢þ
>WENV182452285
OIMD01000423
[OIMD] human gut metagenome; human gut
590
506
-
Leu
CAA
[ENA]
¢þ
>WENV182452330
OIMD01001767
[OIMD] human gut metagenome; human gut
591
676
+
Leu
CAG
[ENA]
¢þ
>WENV182452353
OIMD01004923
[OIMD] human gut metagenome; human gut
600
675
+
Asn
GTT
[ENA]
¢þ
>WENV182452302
OIMD01001074
[OIMD] human gut metagenome; human gut
614
685
+
Gly
TCC
[ENA]
¢þ
>WENV182452296
OIMD01000788
[OIMD] human gut metagenome; human gut
624
551
-
Arg
CCT
[ENA]
¢þ
>WENV182452304
OIMD01001120
[OIMD] human gut metagenome; human gut
630
702
+
Thr
TGT
[ENA]
¢þ
>WENV182452347
OIMD01003846
[OIMD] human gut metagenome; human gut
633
713
+
Leu
TAG
[ENA]
¢þ
>WENV182452344
OIMD01003164
[OIMD] human gut metagenome; human gut
649
573
-
Pro
CGG
[ENA]
¢þ
>WENV182452272
OIMD01000165
[OIMD] human gut metagenome; human gut
699
627
-
Thr
GGT
[ENA]
¢þ
>WENV182452322
OIMD01001487
[OIMD] human gut metagenome; human gut
708
634
-
Gly
GCC
[ENA]
¢þ
>WENV182452336
OIMD01002709
[OIMD] human gut metagenome; human gut
710
636
-
Arg
ACG
[ENA]
¢þ
>WENV182452319
OIMD01001412
[OIMD] human gut metagenome; human gut
718
628
-
Ser
GGA
[ENA]
¢þ
>WENV182452305
OIMD01001120
[OIMD] human gut metagenome; human gut
731
805
+
Ile2
CAT
[ENA]
¢þ
>WENV182452341
OIMD01002933
[OIMD] human gut metagenome; human gut
766
856
+
Ser
GGA
[ENA]
¢þ
>WENV182452293
OIMD01000606
[OIMD] human gut metagenome; human gut
788
700
-
Ser
GGA
[ENA]
¢þ
>WENV182452318
OIMD01001412
[OIMD] human gut metagenome; human gut
810
723
-
Ser
TGA
[ENA]
¢þ
>WENV182452286
OIMD01000428
[OIMD] human gut metagenome; human gut
828
903
+
Pro
CGG
[ENA]
¢þ
>WENV182452306
OIMD01001120
[OIMD] human gut metagenome; human gut
849
924
+
Asp
GTC
[ENA]
¢þ
>WENV182452312
OIMD01001280
[OIMD] human gut metagenome; human gut
886
802
-
Leu
CAA
[ENA]
¢þ
>WENV182452307
OIMD01001120
[OIMD] human gut metagenome; human gut
959
1033
+
Val
TAC
[ENA]
¢þ
>WENV182452309
OIMD01001243
[OIMD] human gut metagenome; human gut
976
1051
+
His
GTG
[ENA]
¢þ
>WENV182452315
OIMD01001354
[OIMD] human gut metagenome; human gut
1030
1101
+
Gln
CTG
[ENA]
¢þ
>WENV182452310
OIMD01001243
[OIMD] human gut metagenome; human gut
1068
1143
+
Gln
TTG
[ENA]
¢þ
>WENV182452326
OIMD01001489
[OIMD] human gut metagenome; human gut
1125
1052
-
Lys
TTT
[ENA]
¢þ
>WENV182452313
OIMD01001286
[OIMD] human gut metagenome; human gut
1129
1042
-
Ser
GCT
[ENA]
¢þ
>WENV182452316
OIMD01001354
[OIMD] human gut metagenome; human gut
1131
1206
+
Pro
CGG
[ENA]
¢þ
>WENV182452311
OIMD01001243
[OIMD] human gut metagenome; human gut
1147
1222
+
Lys
TTT
[ENA]
¢þ
>WENV182452297
OIMD01000789
[OIMD] human gut metagenome; human gut
1181
1269
+
Leu
GAG
[ENA]
¢þ
>WENV182452267
OIMD01000096
[OIMD] human gut metagenome; human gut
1224
1311
+
Ser
CGA
[ENA]
¢þ
>WENV182452325
OIMD01001489
[OIMD] human gut metagenome; human gut
1227
1156
-
Gln
TTG
[ENA]
¢þ
>WENV182452329
OIMD01001539
[OIMD] human gut metagenome; human gut
1274
1198
-
Arg
TCT
[ENA]
¢þ
>WENV182452320
OIMD01001459
[OIMD] human gut metagenome; human gut
1348
1423
+
Thr
TGT
[ENA]
¢þ
>WENV182452324
OIMD01001489
[OIMD] human gut metagenome; human gut
1353
1279
-
His
GTG
[ENA]
¢þ
>WENV182452328
OIMD01001539
[OIMD] human gut metagenome; human gut
1357
1284
-
Gly
TCC
[ENA]
¢þ
>WENV182452321
OIMD01001465
[OIMD] human gut metagenome; human gut
1421
1346
-
Ala
TGC
[ENA]
¢þ
>WENV182452323
OIMD01001489
[OIMD] human gut metagenome; human gut
1433
1358
-
Arg
TCT
[ENA]
¢þ
>WENV182452314
OIMD01001315
[OIMD] human gut metagenome; human gut
1503
1591
+
Ser
GCT
[ENA]
¢þ
>WENV182452237
OIMD01000009
[OIMD] human gut metagenome; human gut
1669
1752
+
Tyr
GTA
[ENA]
¢þ
>WENV182452265
OIMD01000077
[OIMD] human gut metagenome; human gut
1672
1744
+
Glu
TTC
[ENA]
¢þ
>WENV182452273
OIMD01000178
[OIMD] human gut metagenome; human gut
1859
1786
-
fMet
CAT
[ENA]
¢þ
>WENV182452290
OIMD01000524
[OIMD] human gut metagenome; human gut
1875
1800
-
Pro
GGG
[ENA]
¢þ
>WENV182452300
OIMD01000885
[OIMD] human gut metagenome; human gut
2061
1984
-
Arg
TCT
[ENA]
¢þ
>WENV182452291
OIMD01000555
[OIMD] human gut metagenome; human gut
2105
2032
-
Thr
CGT
[ENA]
¢þ
>WENV182452295
OIMD01000778
[OIMD] human gut metagenome; human gut
2120
2049
-
Gln
CTG
[ENA]
¢þ
>WENV182452301
OIMD01000888
[OIMD] human gut metagenome; human gut
2121
2195
+
Pro
TGG
[ENA]
¢þ
>WENV182452288
OIMD01000457
[OIMD] human gut metagenome; human gut
2142
2228
+
Leu
TAA
[ENA]
¢þ
>WENV182452292
OIMD01000573
[OIMD] human gut metagenome; human gut
2203
2279
+
Asp
GTC
[ENA]
¢þ
>WENV182452298
OIMD01000866
[OIMD] human gut metagenome; human gut
2221
2294
+
Lys
CTT
[ENA]
¢þ
>WENV182452276
OIMD01000205
[OIMD] human gut metagenome; human gut
2222
2147
-
His
GTG
[ENA]
¢þ
>WENV182452283
OIMD01000377
[OIMD] human gut metagenome; human gut
2492
2421
-
Gln
TTG
[ENA]
¢þ
>WENV182452287
OIMD01000448
[OIMD] human gut metagenome; human gut
2639
2566
-
Trp
CCA
[ENA]
¢þ
>WENV182452294
OIMD01000673
[OIMD] human gut metagenome; human gut
2823
2895
+
Glu
CTC
[ENA]
¢þ
>WENV182452284
OIMD01000411
[OIMD] human gut metagenome; human gut
2860
2786
-
Met
CAT
[ENA]
¢þ
>WENV182452268
OIMD01000106
[OIMD] human gut metagenome; human gut
2882
2811
-
Cys
GCA
[ENA]
¢þ
>WENV182452279
OIMD01000280
[OIMD] human gut metagenome; human gut
3837
3762
-
Glu
TTC
[ENA]
¢þ
>WENV182452289
OIMD01000465
[OIMD] human gut metagenome; human gut
3942
4016
+
Thr
TGT
[ENA]
¢þ
>WENV182452254
OIMD01000039
[OIMD] human gut metagenome; human gut
4297
4212
-
Ser
TGA
[ENA]
¢þ
>WENV182452260
OIMD01000051
[OIMD] human gut metagenome; human gut
4545
4472
-
Lys
CTT
[ENA]
¢þ
>WENV182452259
OIMD01000051
[OIMD] human gut metagenome; human gut
4634
4562
-
Glu
CTC
[ENA]
¢þ
>WENV182452258
OIMD01000051
[OIMD] human gut metagenome; human gut
4779
4692
-
Ser
GCT
[ENA]
¢þ
>WENV182452278
OIMD01000241
[OIMD] human gut metagenome; human gut
4951
4876
-
Pro
GGG
[ENA]
¢þ
>WENV182452282
OIMD01000329
[OIMD] human gut metagenome; human gut
5496
5423
-
Gly
GCC
[ENA]
¢þ
>WENV182452281
OIMD01000329
[OIMD] human gut metagenome; human gut
5604
5522
-
Leu
CAG
[ENA]
¢þ
>WENV182452280
OIMD01000285
[OIMD] human gut metagenome; human gut
5767
5850
+
Leu
TAG
[ENA]
¢þ
>WENV182452261
OIMD01000066
[OIMD] human gut metagenome; human gut
5908
5820
-
Ser
GGA
[ENA]
¢þ
>WENV182452277
OIMD01000217
[OIMD] human gut metagenome; human gut
5927
5845
-
Leu
CAG
[ENA]
¢þ
>WENV182452274
OIMD01000197
[OIMD] human gut metagenome; human gut
8012
7938
-
Ala
GGC
[ENA]
¢þ
>WENV182452275
OIMD01000202
[OIMD] human gut metagenome; human gut
8224
8312
+
Ser
GGA
[ENA]
¢þ
>WENV182452271
OIMD01000143
[OIMD] human gut metagenome; human gut
8494
8569
+
Gly
GCC
[ENA]
¢þ
>WENV182452248
OIMD01000028
[OIMD] human gut metagenome; human gut
11493
11567
+
Met
CAT
[ENA]
¢þ
>WENV182452266
OIMD01000081
[OIMD] human gut metagenome; human gut
13648
13722
+
Gly
CCC
[ENA]
¢þ
>WENV182452264
OIMD01000076
[OIMD] human gut metagenome; human gut
14792
14718
-
Asn
GTT
[ENA]
¢þ
>WENV182452262
OIMD01000072
[OIMD] human gut metagenome; human gut
18192
18276
+
Leu
CAA
[ENA]
¢þ
>WENV182452235
OIMD01000006
[OIMD] human gut metagenome; human gut
20505
20577
+
fMet
CAT
[ENA]
¢þ
>WENV182452246
OIMD01000024
[OIMD] human gut metagenome; human gut
21381
21456
+
Pro
TGG
[ENA]
¢þ
>WENV182452257
OIMD01000049
[OIMD] human gut metagenome; human gut
21911
21985
+
Asp
GTC
[ENA]
¢þ
>WENV182452250
OIMD01000033
[OIMD] human gut metagenome; human gut
21986
21915
-
Gln
TTG
[ENA]
¢þ
>WENV182452243
OIMD01000020
[OIMD] human gut metagenome; human gut
24830
24902
+
Cys
GCA
[ENA]
¢þ
>WENV182452231
OIMD01000001
[OIMD] human gut metagenome; human gut
27157
27239
+
Leu
TAG
[ENA]
¢þ
>WENV182452241
OIMD01000018
[OIMD] human gut metagenome; human gut
28531
28604
+
Trp
CCA
[ENA]
¢þ
>WENV182452247
OIMD01000024
[OIMD] human gut metagenome; human gut
46177
46250
+
Lys
CTT
[ENA]
¢þ
>WENV182452249
OIMD01000028
[OIMD] human gut metagenome; human gut
49516
49589
+
Phe
GAA
[ENA]
¢þ
>WENV182452242
OIMD01000019
[OIMD] human gut metagenome; human gut
50381
50307
-
Arg
TCT
[ENA]
¢þ
>WENV182452245
OIMD01000021
[OIMD] human gut metagenome; human gut
59938
59865
-
Trp
CCA
[ENA]
¢þ
>WENV182452244
OIMD01000021
[OIMD] human gut metagenome; human gut
61298
61226
-
Thr
GGT
[ENA]
¢þ
>WENV182452240
OIMD01000016
[OIMD] human gut metagenome; human gut
63667
63592
-
Val
TAC
[ENA]
¢þ
>WENV182452239
OIMD01000014
[OIMD] human gut metagenome; human gut
66775
66848
+
Lys
TTT
[ENA]
¢þ
>WENV182452238
OIMD01000013
[OIMD] human gut metagenome; human gut
70233
70306
+
fMet
CAT
[ENA]
¢þ
>WENV182452234
OIMD01000004
[OIMD] human gut metagenome; human gut
79281
79209
-
Arg
CCT
[ENA]
¢þ
>WENV182452236
OIMD01000006
[OIMD] human gut metagenome; human gut
91644
91570
-
Sup
CTA
[ENA]
¢þ
>WENV182452232
OIMD01000001
[OIMD] human gut metagenome; human gut
98255
98327
+
Glu
TTC
[ENA]
¢þ
>WENV182452233
OIMD01000004
[OIMD] human gut metagenome; human gut
129907
129981
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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