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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIMU] human gut metagenome; human gut
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182455878
OIMU01001856
[OIMU] human gut metagenome; human gut
58
131
+
Cys
GCA
[ENA]
¢þ
>WENV182455872
OIMU01001642
[OIMU] human gut metagenome; human gut
62
135
+
His
GTG
[ENA]
¢þ
>WENV182455864
OIMU01001019
[OIMU] human gut metagenome; human gut
62
137
+
Thr
TGT
[ENA]
¢þ
>WENV182455929
OIMU01008438
[OIMU] human gut metagenome; human gut
64
139
+
fMet
CAT
[ENA]
¢þ
>WENV182455903
OIMU01003489
[OIMU] human gut metagenome; human gut
98
182
+
Leu
CAA
[ENA]
¢þ
>WENV182455919
OIMU01005509
[OIMU] human gut metagenome; human gut
99
12
-
Ser
TGA
[ENA]
¢þ
>WENV182455915
OIMU01005341
[OIMU] human gut metagenome; human gut
117
41
-
Asp
GTC
[ENA]
¢þ
>WENV182455879
OIMU01001856
[OIMU] human gut metagenome; human gut
134
209
+
Gly
GCC
[ENA]
¢þ
>WENV182455902
OIMU01003449
[OIMU] human gut metagenome; human gut
138
229
+
Ser
CGA
[ENA]
¢þ
>WENV182455873
OIMU01001642
[OIMU] human gut metagenome; human gut
140
214
+
Thr
TGT
[ENA]
¢þ
>WENV182455852
OIMU01000287
[OIMU] human gut metagenome; human gut
144
220
+
Ile
GAT
[ENA]
¢þ
>WENV182455921
OIMU01005851
[OIMU] human gut metagenome; human gut
146
219
+
Gln
CTG
[ENA]
¢þ
>WENV182455888
OIMU01001950
[OIMU] human gut metagenome; human gut
149
73
-
Arg
ACG
[ENA]
¢þ
>WENV182455924
OIMU01006017
[OIMU] human gut metagenome; human gut
150
223
+
Trp
CCA
[ENA]
¢þ
>WENV182455930
OIMU01008438
[OIMU] human gut metagenome; human gut
162
235
+
Phe
GAA
[ENA]
¢þ
>WENV182455865
OIMU01001019
[OIMU] human gut metagenome; human gut
168
253
+
Tyr
GTA
[ENA]
¢þ
>WENV182455918
OIMU01005509
[OIMU] human gut metagenome; human gut
181
106
-
Arg
ACG
[ENA]
¢þ
>WENV182455887
OIMU01001932
[OIMU] human gut metagenome; human gut
186
110
-
Met
CAT
[ENA]
¢þ
>WENV182455927
OIMU01007417
[OIMU] human gut metagenome; human gut
192
101
-
Ser
GGA
[ENA]
¢þ
>WENV182455895
OIMU01003066
[OIMU] human gut metagenome; human gut
237
323
+
Leu
CAA
[ENA]
¢þ
>WENV182455931
OIMU01008438
[OIMU] human gut metagenome; human gut
243
314
+
Gly
GCC
[ENA]
¢þ
>WENV182455922
OIMU01005851
[OIMU] human gut metagenome; human gut
249
324
+
Pro
TGG
[ENA]
¢þ
>WENV182455901
OIMU01003439
[OIMU] human gut metagenome; human gut
258
171
-
Ser
TGA
[ENA]
¢þ
>WENV182455917
OIMU01005509
[OIMU] human gut metagenome; human gut
262
187
-
Gln
TTG
[ENA]
¢þ
>WENV182455886
OIMU01001932
[OIMU] human gut metagenome; human gut
263
188
-
Thr
GGT
[ENA]
¢þ
>WENV182455897
OIMU01003131
[OIMU] human gut metagenome; human gut
264
190
-
Arg
CCG
[ENA]
¢þ
>WENV182455896
OIMU01003108
[OIMU] human gut metagenome; human gut
265
338
+
Pro
CGG
[ENA]
¢þ
>WENV182455880
OIMU01001856
[OIMU] human gut metagenome; human gut
267
357
+
Leu
TAA
[ENA]
¢þ
>WENV182455853
OIMU01000287
[OIMU] human gut metagenome; human gut
271
346
+
Ala
TGC
[ENA]
¢þ
>WENV182455928
OIMU01008248
[OIMU] human gut metagenome; human gut
279
353
+
Asn
GTT
[ENA]
¢þ
>WENV182455911
OIMU01005017
[OIMU] human gut metagenome; human gut
304
231
-
Gln
TTG
[ENA]
¢þ
>WENV182455923
OIMU01005851
[OIMU] human gut metagenome; human gut
329
405
+
Arg
TCT
[ENA]
¢þ
>WENV182455920
OIMU01005802
[OIMU] human gut metagenome; human gut
332
414
+
Leu
TAG
[ENA]
¢þ
>WENV182455932
OIMU01008438
[OIMU] human gut metagenome; human gut
346
417
+
Gln
TTG
[ENA]
¢þ
>WENV182455908
OIMU01004838
[OIMU] human gut metagenome; human gut
352
279
-
Gly
CCC
[ENA]
¢þ
>WENV182455866
OIMU01001019
[OIMU] human gut metagenome; human gut
354
428
+
Thr
GGT
[ENA]
¢þ
>WENV182455893
OIMU01002506
[OIMU] human gut metagenome; human gut
365
280
-
Ser
TGA
[ENA]
¢þ
>WENV182455885
OIMU01001932
[OIMU] human gut metagenome; human gut
368
292
-
fMet
CAT
[ENA]
¢þ
>WENV182455910
OIMU01005017
[OIMU] human gut metagenome; human gut
385
309
-
Pro
TGG
[ENA]
¢þ
>WENV182455926
OIMU01007156
[OIMU] human gut metagenome; human gut
388
459
+
Cys
GCA
[ENA]
¢þ
>WENV182455891
OIMU01002254
[OIMU] human gut metagenome; human gut
410
484
+
Gly
TCC
[ENA]
¢þ
>WENV182455877
OIMU01001842
[OIMU] human gut metagenome; human gut
411
482
+
Gln
TTG
[ENA]
¢þ
>WENV182455889
OIMU01002092
[OIMU] human gut metagenome; human gut
417
491
+
Ile2
CAT
[ENA]
¢þ
>WENV182455912
OIMU01005032
[OIMU] human gut metagenome; human gut
419
494
+
Gly
GCC
[ENA]
¢þ
>WENV182455925
OIMU01006688
[OIMU] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182455840
OIMU01000116
[OIMU] human gut metagenome; human gut
431
505
+
Ala
GGC
[ENA]
¢þ
>WENV182455905
OIMU01003571
[OIMU] human gut metagenome; human gut
434
358
-
Ile2
CAT
[ENA]
¢þ
>WENV182455914
OIMU01005286
[OIMU] human gut metagenome; human gut
450
523
+
Asn
GTT
[ENA]
¢þ
>WENV182455907
OIMU01004838
[OIMU] human gut metagenome; human gut
455
382
-
Thr
CGT
[ENA]
¢þ
>WENV182455858
OIMU01000587
[OIMU] human gut metagenome; human gut
457
384
-
Lys
TTT
[ENA]
¢þ
>WENV182455874
OIMU01001658
[OIMU] human gut metagenome; human gut
457
544
+
Ser
GCT
[ENA]
¢þ
>WENV182455904
OIMU01003518
[OIMU] human gut metagenome; human gut
459
384
-
Ala
CGC
[ENA]
¢þ
>WENV182455884
OIMU01001932
[OIMU] human gut metagenome; human gut
467
395
-
Thr
TGT
[ENA]
¢þ
>WENV182455894
OIMU01003048
[OIMU] human gut metagenome; human gut
476
550
+
Pro
GGG
[ENA]
¢þ
>WENV182455890
OIMU01002120
[OIMU] human gut metagenome; human gut
520
447
-
Gly
CCC
[ENA]
¢þ
>WENV182455913
OIMU01005032
[OIMU] human gut metagenome; human gut
524
598
+
Cys
GCA
[ENA]
¢þ
>WENV182455871
OIMU01001571
[OIMU] human gut metagenome; human gut
532
603
+
Gln
CTG
[ENA]
¢þ
>WENV182455916
OIMU01005448
[OIMU] human gut metagenome; human gut
563
639
+
Arg
ACG
[ENA]
¢þ
>WENV182455906
OIMU01004692
[OIMU] human gut metagenome; human gut
566
649
+
Leu
TAG
[ENA]
¢þ
>WENV182455855
OIMU01000495
[OIMU] human gut metagenome; human gut
570
642
+
Glu
TTC
[ENA]
¢þ
>WENV182455900
OIMU01003404
[OIMU] human gut metagenome; human gut
585
660
+
Glu
CTC
[ENA]
¢þ
>WENV182455883
OIMU01001932
[OIMU] human gut metagenome; human gut
622
547
-
Asn
GTT
[ENA]
¢þ
>WENV182455856
OIMU01000528
[OIMU] human gut metagenome; human gut
660
747
+
Ser
TGA
[ENA]
¢þ
>WENV182455909
OIMU01004929
[OIMU] human gut metagenome; human gut
682
607
-
Lys
CTT
[ENA]
¢þ
>WENV182455882
OIMU01001932
[OIMU] human gut metagenome; human gut
732
658
-
Gly
GCC
[ENA]
¢þ
>WENV182455892
OIMU01002254
[OIMU] human gut metagenome; human gut
767
676
-
Ser
GCT
[ENA]
¢þ
>WENV182455898
OIMU01003182
[OIMU] human gut metagenome; human gut
773
701
-
Arg
CCG
[ENA]
¢þ
>WENV182455870
OIMU01001513
[OIMU] human gut metagenome; human gut
783
867
+
Leu
CAA
[ENA]
¢þ
>WENV182455881
OIMU01001932
[OIMU] human gut metagenome; human gut
811
735
-
Asp
GTC
[ENA]
¢þ
>WENV182455899
OIMU01003318
[OIMU] human gut metagenome; human gut
897
811
-
Leu
CAG
[ENA]
¢þ
>WENV182455875
OIMU01001658
[OIMU] human gut metagenome; human gut
898
972
+
Glu
CTC
[ENA]
¢þ
>WENV182455868
OIMU01001159
[OIMU] human gut metagenome; human gut
907
835
-
Arg
CCT
[ENA]
¢þ
>WENV182455867
OIMU01001095
[OIMU] human gut metagenome; human gut
932
858
-
Asp
GTC
[ENA]
¢þ
>WENV182455876
OIMU01001788
[OIMU] human gut metagenome; human gut
976
1049
+
Lys
CTT
[ENA]
¢þ
>WENV182455860
OIMU01000682
[OIMU] human gut metagenome; human gut
1232
1304
+
Arg
CCT
[ENA]
¢þ
>WENV182455841
OIMU01000119
[OIMU] human gut metagenome; human gut
1270
1344
+
Thr
TGT
[ENA]
¢þ
>WENV182455857
OIMU01000545
[OIMU] human gut metagenome; human gut
1347
1422
+
Pro
TGG
[ENA]
¢þ
>WENV182455842
OIMU01000119
[OIMU] human gut metagenome; human gut
1387
1470
+
Tyr
GTA
[ENA]
¢þ
>WENV182455869
OIMU01001420
[OIMU] human gut metagenome; human gut
1447
1374
-
Pro
CGG
[ENA]
¢þ
>WENV182455843
OIMU01000119
[OIMU] human gut metagenome; human gut
1564
1636
+
Thr
GGT
[ENA]
¢þ
>WENV182455838
OIMU01000078
[OIMU] human gut metagenome; human gut
1621
1696
+
His
GTG
[ENA]
¢þ
>WENV182455863
OIMU01000758
[OIMU] human gut metagenome; human gut
1899
1972
+
fMet
CAT
[ENA]
¢þ
>WENV182455854
OIMU01000335
[OIMU] human gut metagenome; human gut
2069
2141
+
fMet
CAT
[ENA]
¢þ
>WENV182455862
OIMU01000694
[OIMU] human gut metagenome; human gut
2167
2093
-
Ala
TGC
[ENA]
¢þ
>WENV182455859
OIMU01000609
[OIMU] human gut metagenome; human gut
2238
2163
-
Ala
TGC
[ENA]
¢þ
>WENV182455847
OIMU01000189
[OIMU] human gut metagenome; human gut
2249
2173
-
Val
TAC
[ENA]
¢þ
>WENV182455861
OIMU01000694
[OIMU] human gut metagenome; human gut
2258
2184
-
Ile
GAT
[ENA]
¢þ
>WENV182455851
OIMU01000280
[OIMU] human gut metagenome; human gut
2389
2460
+
Gln
TTG
[ENA]
¢þ
>WENV182455844
OIMU01000119
[OIMU] human gut metagenome; human gut
2929
3002
+
Trp
CCA
[ENA]
¢þ
>WENV182455846
OIMU01000182
[OIMU] human gut metagenome; human gut
3191
3116
-
Lys
TTT
[ENA]
¢þ
>WENV182455848
OIMU01000251
[OIMU] human gut metagenome; human gut
3516
3590
+
Asn
GTT
[ENA]
¢þ
>WENV182455850
OIMU01000264
[OIMU] human gut metagenome; human gut
3545
3618
+
Phe
GAA
[ENA]
¢þ
>WENV182455849
OIMU01000263
[OIMU] human gut metagenome; human gut
3980
3905
-
Pro
GGG
[ENA]
¢þ
>WENV182455839
OIMU01000095
[OIMU] human gut metagenome; human gut
4175
4250
+
Gly
CCC
[ENA]
¢þ
>WENV182455845
OIMU01000177
[OIMU] human gut metagenome; human gut
5038
5113
+
Asn
GTT
[ENA]
¢þ
>WENV182455837
OIMU01000076
[OIMU] human gut metagenome; human gut
5153
5065
-
Ser
GGA
[ENA]
¢þ
>WENV182455836
OIMU01000069
[OIMU] human gut metagenome; human gut
6986
7059
+
Phe
GAA
[ENA]
¢þ
>WENV182455835
OIMU01000019
[OIMU] human gut metagenome; human gut
10043
10131
+
Ser
GGA
[ENA]
¢þ
>WENV182455833
OIMU01000012
[OIMU] human gut metagenome; human gut
11390
11463
+
Gly
GCC
[ENA]
¢þ
>WENV182455834
OIMU01000012
[OIMU] human gut metagenome; human gut
11479
11564
+
Leu
TAA
[ENA]
¢þ
>WENV182455832
OIMU01000009
[OIMU] human gut metagenome; human gut
13142
13216
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK