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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OINA] human gut metagenome; human gut
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182456803
OINA01003610
[OINA] human gut metagenome; human gut
47
122
+
His
GTG
[ENA]
¢þ
>WENV182456805
OINA01003832
[OINA] human gut metagenome; human gut
57
141
+
Tyr
GTA
[ENA]
¢þ
>WENV182456813
OINA01005328
[OINA] human gut metagenome; human gut
78
151
+
Trp
CCA
[ENA]
¢þ
>WENV182456808
OINA01004479
[OINA] human gut metagenome; human gut
124
49
-
Thr
GGT
[ENA]
¢þ
>WENV182456810
OINA01004934
[OINA] human gut metagenome; human gut
142
71
-
Gln
TTG
[ENA]
¢þ
>WENV182456804
OINA01003610
[OINA] human gut metagenome; human gut
143
229
+
Leu
CAG
[ENA]
¢þ
>WENV182456811
OINA01004955
[OINA] human gut metagenome; human gut
175
101
-
Arg
TCT
[ENA]
¢þ
>WENV182456789
OINA01000992
[OINA] human gut metagenome; human gut
197
123
-
His
GTG
[ENA]
¢þ
>WENV182456814
OINA01005475
[OINA] human gut metagenome; human gut
201
276
+
Ala
GGC
[ENA]
¢þ
>WENV182456783
OINA01000707
[OINA] human gut metagenome; human gut
252
179
-
Asn
GTT
[ENA]
¢þ
>WENV182456806
OINA01003832
[OINA] human gut metagenome; human gut
258
332
+
Gly
TCC
[ENA]
¢þ
>WENV182456788
OINA01000992
[OINA] human gut metagenome; human gut
280
207
-
Phe
GAA
[ENA]
¢þ
>WENV182456807
OINA01003832
[OINA] human gut metagenome; human gut
339
414
+
Thr
GGT
[ENA]
¢þ
>WENV182456794
OINA01001529
[OINA] human gut metagenome; human gut
339
421
+
Leu
TAG
[ENA]
¢þ
>WENV182456780
OINA01000443
[OINA] human gut metagenome; human gut
346
418
+
Arg
CCT
[ENA]
¢þ
>WENV182456795
OINA01001819
[OINA] human gut metagenome; human gut
354
426
+
Glu
TTC
[ENA]
¢þ
>WENV182456787
OINA01000992
[OINA] human gut metagenome; human gut
359
285
-
Arg
ACG
[ENA]
¢þ
>WENV182456812
OINA01005321
[OINA] human gut metagenome; human gut
364
451
+
Ser
GCT
[ENA]
¢þ
>WENV182456809
OINA01004668
[OINA] human gut metagenome; human gut
388
302
-
Leu
GAG
[ENA]
¢þ
>WENV182456782
OINA01000615
[OINA] human gut metagenome; human gut
392
316
-
Met
CAT
[ENA]
¢þ
>WENV182456797
OINA01002387
[OINA] human gut metagenome; human gut
394
469
+
Asn
GTT
[ENA]
¢þ
>WENV182456781
OINA01000545
[OINA] human gut metagenome; human gut
435
361
-
Thr
TGT
[ENA]
¢þ
>WENV182456802
OINA01003478
[OINA] human gut metagenome; human gut
442
517
+
Ile
GAT
[ENA]
¢þ
>WENV182456786
OINA01000992
[OINA] human gut metagenome; human gut
451
366
-
Ser
GCT
[ENA]
¢þ
>WENV182456793
OINA01001504
[OINA] human gut metagenome; human gut
471
544
+
fMet
CAT
[ENA]
¢þ
>WENV182456796
OINA01002035
[OINA] human gut metagenome; human gut
475
402
-
Gly
GCC
[ENA]
¢þ
>WENV182456784
OINA01000755
[OINA] human gut metagenome; human gut
511
437
-
Asn
GTT
[ENA]
¢þ
>WENV182456801
OINA01002983
[OINA] human gut metagenome; human gut
550
477
-
Gly
TCC
[ENA]
¢þ
>WENV182456773
OINA01000233
[OINA] human gut metagenome; human gut
561
644
+
Tyr
GTA
[ENA]
¢þ
>WENV182456798
OINA01002399
[OINA] human gut metagenome; human gut
570
494
-
Arg
ACG
[ENA]
¢þ
>WENV182456772
OINA01000151
[OINA] human gut metagenome; human gut
576
501
-
Pro
GGG
[ENA]
¢þ
>WENV182456799
OINA01002543
[OINA] human gut metagenome; human gut
652
578
-
Ala
TGC
[ENA]
¢þ
>WENV182456800
OINA01002983
[OINA] human gut metagenome; human gut
681
596
-
Tyr
GTA
[ENA]
¢þ
>WENV182456774
OINA01000233
[OINA] human gut metagenome; human gut
758
830
+
Thr
GGT
[ENA]
¢þ
>WENV182456791
OINA01001197
[OINA] human gut metagenome; human gut
768
693
-
Val
GAC
[ENA]
¢þ
>WENV182456790
OINA01001044
[OINA] human gut metagenome; human gut
807
892
+
Ser
TGA
[ENA]
¢þ
>WENV182456792
OINA01001202
[OINA] human gut metagenome; human gut
810
722
-
Ser
GGA
[ENA]
¢þ
>WENV182456785
OINA01000793
[OINA] human gut metagenome; human gut
903
977
+
Asp
GTC
[ENA]
¢þ
>WENV182456769
OINA01000034
[OINA] human gut metagenome; human gut
1052
1125
+
Lys
TTT
[ENA]
¢þ
>WENV182456777
OINA01000308
[OINA] human gut metagenome; human gut
1089
1016
-
Pro
CGG
[ENA]
¢þ
>WENV182456776
OINA01000308
[OINA] human gut metagenome; human gut
1174
1101
-
Phe
GAA
[ENA]
¢þ
>WENV182456778
OINA01000378
[OINA] human gut metagenome; human gut
1255
1331
+
Asp
GTC
[ENA]
¢þ
>WENV182456779
OINA01000378
[OINA] human gut metagenome; human gut
1340
1415
+
Trp
CCA
[ENA]
¢þ
>WENV182456771
OINA01000084
[OINA] human gut metagenome; human gut
1371
1297
-
Ala
TGC
[ENA]
¢þ
>WENV182456770
OINA01000084
[OINA] human gut metagenome; human gut
1476
1400
-
Ile
GAT
[ENA]
¢þ
>WENV182456775
OINA01000288
[OINA] human gut metagenome; human gut
1744
1660
-
Leu
CAA
[ENA]
¢þ
>WENV182456766
OINA01000010
[OINA] human gut metagenome; human gut
2502
2577
+
Glu
TTC
[ENA]
¢þ
>WENV182456767
OINA01000010
[OINA] human gut metagenome; human gut
5917
5991
+
Glu
CTC
[ENA]
¢þ
>WENV182456768
OINA01000010
[OINA] human gut metagenome; human gut
5995
6070
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK