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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OINL] human gut metagenome; human gut
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182459407
OINL01000104
[OINL] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182459439
OINL01000718
[OINL] human gut metagenome; human gut
10
85
+
Lys
CTT
[ENA]
¢þ
>WENV182459460
OINL01001860
[OINL] human gut metagenome; human gut
42
133
+
Ser
CGA
[ENA]
¢þ
>WENV182459466
OINL01003209
[OINL] human gut metagenome; human gut
57
131
+
Arg
CCG
[ENA]
¢þ
>WENV182459467
OINL01003219
[OINL] human gut metagenome; human gut
82
163
+
Tyr
GTA
[ENA]
¢þ
>WENV182459427
OINL01000303
[OINL] human gut metagenome; human gut
84
158
+
Asp
GTC
[ENA]
¢þ
>WENV182459462
OINL01002725
[OINL] human gut metagenome; human gut
111
182
+
Gln
CTG
[ENA]
¢þ
>WENV182459408
OINL01000104
[OINL] human gut metagenome; human gut
139
213
+
Met
CAT
[ENA]
¢þ
>WENV182459442
OINL01000800
[OINL] human gut metagenome; human gut
140
66
-
Met
CAT
[ENA]
¢þ
>WENV182459422
OINL01000228
[OINL] human gut metagenome; human gut
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV182459428
OINL01000343
[OINL] human gut metagenome; human gut
164
236
+
Arg
CCG
[ENA]
¢þ
>WENV182459463
OINL01002787
[OINL] human gut metagenome; human gut
192
266
+
Lys
CTT
[ENA]
¢þ
>WENV182459468
OINL01003219
[OINL] human gut metagenome; human gut
193
265
+
Thr
TGT
[ENA]
¢þ
>WENV182459472
OINL01003755
[OINL] human gut metagenome; human gut
209
299
+
Ser
CGA
[ENA]
¢þ
>WENV182459445
OINL01000896
[OINL] human gut metagenome; human gut
231
307
+
fMet
CAT
[ENA]
¢þ
>WENV182459456
OINL01001225
[OINL] human gut metagenome; human gut
247
162
-
Ser
TGA
[ENA]
¢þ
>WENV182459458
OINL01001834
[OINL] human gut metagenome; human gut
288
358
+
Gln
CTG
[ENA]
¢þ
>WENV182459473
OINL01004085
[OINL] human gut metagenome; human gut
301
228
-
Ile2
CAT
[ENA]
¢þ
>WENV182459469
OINL01003219
[OINL] human gut metagenome; human gut
316
390
+
Ile2
CAT
[ENA]
¢þ
>WENV182459455
OINL01001184
[OINL] human gut metagenome; human gut
352
277
-
Trp
CCA
[ENA]
¢þ
>WENV182459457
OINL01001266
[OINL] human gut metagenome; human gut
358
433
+
Val
GAC
[ENA]
¢þ
>WENV182459471
OINL01003608
[OINL] human gut metagenome; human gut
363
450
+
Ser
GCT
[ENA]
¢þ
>WENV182459446
OINL01000939
[OINL] human gut metagenome; human gut
370
442
+
Glu
TTC
[ENA]
¢þ
>WENV182459459
OINL01001834
[OINL] human gut metagenome; human gut
389
463
+
Pro
CGG
[ENA]
¢þ
>WENV182459470
OINL01003219
[OINL] human gut metagenome; human gut
408
483
+
Asp
GTC
[ENA]
¢þ
>WENV182459394
OINL01000041
[OINL] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182459465
OINL01002841
[OINL] human gut metagenome; human gut
430
354
-
His
GTG
[ENA]
¢þ
>WENV182459443
OINL01000834
[OINL] human gut metagenome; human gut
462
537
+
fMet
CAT
[ENA]
¢þ
>WENV182459447
OINL01000939
[OINL] human gut metagenome; human gut
483
553
+
Cys
GCA
[ENA]
¢þ
>WENV182459461
OINL01002194
[OINL] human gut metagenome; human gut
504
580
+
Asp
GTC
[ENA]
¢þ
>WENV182459464
OINL01002841
[OINL] human gut metagenome; human gut
513
438
-
Arg
TCT
[ENA]
¢þ
>WENV182459444
OINL01000834
[OINL] human gut metagenome; human gut
557
630
+
Phe
GAA
[ENA]
¢þ
>WENV182459451
OINL01001105
[OINL] human gut metagenome; human gut
571
646
+
Pro
TGG
[ENA]
¢þ
>WENV182459449
OINL01001073
[OINL] human gut metagenome; human gut
607
681
+
Ile
GAT
[ENA]
¢þ
>WENV182459401
OINL01000051
[OINL] human gut metagenome; human gut
648
735
+
Ser
GCT
[ENA]
¢þ
>WENV182459452
OINL01001105
[OINL] human gut metagenome; human gut
650
720
+
Gly
TCC
[ENA]
¢þ
>WENV182459450
OINL01001073
[OINL] human gut metagenome; human gut
698
772
+
Ala
TGC
[ENA]
¢þ
>WENV182459453
OINL01001105
[OINL] human gut metagenome; human gut
741
816
+
Arg
TCT
[ENA]
¢þ
>WENV182459454
OINL01001105
[OINL] human gut metagenome; human gut
828
903
+
His
GTG
[ENA]
¢þ
>WENV182459434
OINL01000549
[OINL] human gut metagenome; human gut
867
941
+
Ala
GGC
[ENA]
¢þ
>WENV182459448
OINL01001013
[OINL] human gut metagenome; human gut
939
863
-
Ile
GAT
[ENA]
¢þ
>WENV182459402
OINL01000051
[OINL] human gut metagenome; human gut
1090
1164
+
Glu
CTC
[ENA]
¢þ
>WENV182459440
OINL01000763
[OINL] human gut metagenome; human gut
1305
1378
+
Lys
CTT
[ENA]
¢þ
>WENV182459441
OINL01000763
[OINL] human gut metagenome; human gut
1402
1475
+
Lys
CTT
[ENA]
¢þ
>WENV182459404
OINL01000074
[OINL] human gut metagenome; human gut
1506
1432
-
Cys
GCA
[ENA]
¢þ
>WENV182459438
OINL01000666
[OINL] human gut metagenome; human gut
1846
1921
+
Val
TAC
[ENA]
¢þ
>WENV182459437
OINL01000656
[OINL] human gut metagenome; human gut
1896
1824
-
Thr
GGT
[ENA]
¢þ
>WENV182459436
OINL01000614
[OINL] human gut metagenome; human gut
2108
2182
+
Asp
GTC
[ENA]
¢þ
>WENV182459435
OINL01000613
[OINL] human gut metagenome; human gut
2140
2056
-
Tyr
GTA
[ENA]
¢þ
>WENV182459433
OINL01000533
[OINL] human gut metagenome; human gut
2517
2601
+
Leu
CAA
[ENA]
¢þ
>WENV182459424
OINL01000238
[OINL] human gut metagenome; human gut
2562
2487
-
Phe
GAA
[ENA]
¢þ
>WENV182459420
OINL01000153
[OINL] human gut metagenome; human gut
2703
2628
-
Gly
CCC
[ENA]
¢þ
>WENV182459423
OINL01000238
[OINL] human gut metagenome; human gut
2743
2816
+
Pro
CGG
[ENA]
¢þ
>WENV182459409
OINL01000140
[OINL] human gut metagenome; human gut
3099
3173
+
Thr
TGT
[ENA]
¢þ
>WENV182459432
OINL01000424
[OINL] human gut metagenome; human gut
3387
3460
+
Ile
GAT
[ENA]
¢þ
>WENV182459430
OINL01000362
[OINL] human gut metagenome; human gut
3549
3477
-
Glu
TTC
[ENA]
¢þ
>WENV182459421
OINL01000191
[OINL] human gut metagenome; human gut
3704
3616
-
Ser
GGA
[ENA]
¢þ
>WENV182459431
OINL01000411
[OINL] human gut metagenome; human gut
3818
3893
+
His
GTG
[ENA]
¢þ
>WENV182459429
OINL01000360
[OINL] human gut metagenome; human gut
4485
4560
+
Pro
TGG
[ENA]
¢þ
>WENV182459419
OINL01000146
[OINL] human gut metagenome; human gut
4575
4501
-
Thr
TGT
[ENA]
¢þ
>WENV182459418
OINL01000146
[OINL] human gut metagenome; human gut
4653
4580
-
His
GTG
[ENA]
¢þ
>WENV182459425
OINL01000260
[OINL] human gut metagenome; human gut
4712
4629
-
Tyr
GTA
[ENA]
¢þ
>WENV182459417
OINL01000146
[OINL] human gut metagenome; human gut
4730
4659
-
Arg
TCG
[ENA]
¢þ
>WENV182459416
OINL01000146
[OINL] human gut metagenome; human gut
4814
4743
-
Gln
TTG
[ENA]
¢þ
>WENV182459415
OINL01000146
[OINL] human gut metagenome; human gut
5005
4932
-
Phe
GAA
[ENA]
¢þ
>WENV182459414
OINL01000146
[OINL] human gut metagenome; human gut
5085
5014
-
Gln
CTG
[ENA]
¢þ
>WENV182459392
OINL01000029
[OINL] human gut metagenome; human gut
5136
5210
+
Ile2
CAT
[ENA]
¢þ
>WENV182459413
OINL01000146
[OINL] human gut metagenome; human gut
5177
5091
-
Ser
TGA
[ENA]
¢þ
>WENV182459412
OINL01000146
[OINL] human gut metagenome; human gut
5259
5184
-
Arg
ACG
[ENA]
¢þ
>WENV182459411
OINL01000146
[OINL] human gut metagenome; human gut
5350
5265
-
Ser
GCT
[ENA]
¢þ
>WENV182459426
OINL01000266
[OINL] human gut metagenome; human gut
5609
5534
-
Pro
GGG
[ENA]
¢þ
>WENV182459400
OINL01000042
[OINL] human gut metagenome; human gut
6796
6714
-
Tyr
GTA
[ENA]
¢þ
>WENV182459406
OINL01000093
[OINL] human gut metagenome; human gut
6846
6773
-
Trp
CCA
[ENA]
¢þ
>WENV182459399
OINL01000042
[OINL] human gut metagenome; human gut
7032
6960
-
Glu
TTC
[ENA]
¢þ
>WENV182459398
OINL01000042
[OINL] human gut metagenome; human gut
7108
7037
-
Gln
TTG
[ENA]
¢þ
>WENV182459397
OINL01000042
[OINL] human gut metagenome; human gut
7186
7113
-
Trp
CCA
[ENA]
¢þ
>WENV182459396
OINL01000042
[OINL] human gut metagenome; human gut
7266
7193
-
Asn
GTT
[ENA]
¢þ
>WENV182459395
OINL01000042
[OINL] human gut metagenome; human gut
7557
7484
-
fMet
CAT
[ENA]
¢þ
>WENV182459410
OINL01000144
[OINL] human gut metagenome; human gut
8120
8205
+
Ser
TGA
[ENA]
¢þ
>WENV182459405
OINL01000077
[OINL] human gut metagenome; human gut
8259
8331
+
Arg
CCT
[ENA]
¢þ
>WENV182459391
OINL01000017
[OINL] human gut metagenome; human gut
12436
12507
+
Gln
TTG
[ENA]
¢þ
>WENV182459403
OINL01000067
[OINL] human gut metagenome; human gut
16620
16691
+
Gln
CTG
[ENA]
¢þ
>WENV182459393
OINL01000040
[OINL] human gut metagenome; human gut
17721
17795
+
Arg
TCT
[ENA]
¢þ
>WENV182459388
OINL01000014
[OINL] human gut metagenome; human gut
21102
21175
+
Gly
GCC
[ENA]
¢þ
>WENV182459389
OINL01000014
[OINL] human gut metagenome; human gut
21222
21305
+
Leu
CAG
[ENA]
¢þ
>WENV182459390
OINL01000014
[OINL] human gut metagenome; human gut
21318
21391
+
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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