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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OINV] human gut metagenome; human gut
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182461766
OINV01002178
[OINV] human gut metagenome; human gut
64
149
+
Tyr
GTA
[ENA]
¢þ
>WENV182461775
OINV01004353
[OINV] human gut metagenome; human gut
83
168
+
Ser
GCT
[ENA]
¢þ
>WENV182461781
OINV01004515
[OINV] human gut metagenome; human gut
92
166
+
Pro
TGG
[ENA]
¢þ
>WENV182461748
OINV01000496
[OINV] human gut metagenome; human gut
112
186
+
Cys
GCA
[ENA]
¢þ
>WENV182461771
OINV01002999
[OINV] human gut metagenome; human gut
164
90
-
Gln
TTG
[ENA]
¢þ
>WENV182461756
OINV01001508
[OINV] human gut metagenome; human gut
167
243
+
Met
CAT
[ENA]
¢þ
>WENV182461776
OINV01004353
[OINV] human gut metagenome; human gut
175
249
+
Arg
ACG
[ENA]
¢þ
>WENV182461763
OINV01002029
[OINV] human gut metagenome; human gut
187
262
+
Pro
GGG
[ENA]
¢þ
>WENV182461782
OINV01004523
[OINV] human gut metagenome; human gut
224
142
-
Leu
TAG
[ENA]
¢þ
>WENV182461731
OINV01000056
[OINV] human gut metagenome; human gut
229
156
-
Lys
CTT
[ENA]
¢þ
>WENV182461784
OINV01005676
[OINV] human gut metagenome; human gut
234
310
+
fMet
CAT
[ENA]
¢þ
>WENV182461744
OINV01000445
[OINV] human gut metagenome; human gut
236
309
+
Lys
TTT
[ENA]
¢þ
>WENV182461777
OINV01004353
[OINV] human gut metagenome; human gut
254
327
+
Phe
GAA
[ENA]
¢þ
>WENV182461770
OINV01002999
[OINV] human gut metagenome; human gut
272
188
-
Leu
TAG
[ENA]
¢þ
>WENV182461733
OINV01000095
[OINV] human gut metagenome; human gut
280
352
+
Glu
TTC
[ENA]
¢þ
>WENV182461786
OINV01006801
[OINV] human gut metagenome; human gut
288
214
-
Pro
CGG
[ENA]
¢þ
>WENV182461767
OINV01002452
[OINV] human gut metagenome; human gut
324
251
-
Gly
CCC
[ENA]
¢þ
>WENV182461773
OINV01003756
[OINV] human gut metagenome; human gut
335
251
-
Leu
CAA
[ENA]
¢þ
>WENV182461757
OINV01001508
[OINV] human gut metagenome; human gut
335
409
+
Glu
CTC
[ENA]
¢þ
>WENV182461778
OINV01004353
[OINV] human gut metagenome; human gut
337
411
+
His
GTG
[ENA]
¢þ
>WENV182461785
OINV01006801
[OINV] human gut metagenome; human gut
390
317
-
Trp
CCA
[ENA]
¢þ
>WENV182461743
OINV01000385
[OINV] human gut metagenome; human gut
403
327
-
Met
CAT
[ENA]
¢þ
>WENV182461758
OINV01001508
[OINV] human gut metagenome; human gut
449
523
+
Asn
GTT
[ENA]
¢þ
>WENV182461783
OINV01005662
[OINV] human gut metagenome; human gut
455
381
-
Ala
TGC
[ENA]
¢þ
>WENV182461759
OINV01001900
[OINV] human gut metagenome; human gut
456
531
+
Phe
GAA
[ENA]
¢þ
>WENV182461761
OINV01001930
[OINV] human gut metagenome; human gut
470
546
+
Pro
CGG
[ENA]
¢þ
>WENV182461780
OINV01004465
[OINV] human gut metagenome; human gut
524
599
+
Thr
TGT
[ENA]
¢þ
>WENV182461774
OINV01004242
[OINV] human gut metagenome; human gut
526
451
-
Asn
GTT
[ENA]
¢þ
>WENV182461772
OINV01003525
[OINV] human gut metagenome; human gut
530
456
-
Arg
TCT
[ENA]
¢þ
>WENV182461751
OINV01000564
[OINV] human gut metagenome; human gut
547
463
-
Leu
TAA
[ENA]
¢þ
>WENV182461768
OINV01002605
[OINV] human gut metagenome; human gut
559
645
+
Leu
GAG
[ENA]
¢þ
>WENV182461779
OINV01004395
[OINV] human gut metagenome; human gut
582
507
-
Lys
TTT
[ENA]
¢þ
>WENV182461762
OINV01002021
[OINV] human gut metagenome; human gut
587
661
+
Ala
GGC
[ENA]
¢þ
>WENV182461764
OINV01002094
[OINV] human gut metagenome; human gut
597
671
+
Thr
TGT
[ENA]
¢þ
>WENV182461750
OINV01000564
[OINV] human gut metagenome; human gut
636
563
-
Gly
GCC
[ENA]
¢þ
>WENV182461765
OINV01002163
[OINV] human gut metagenome; human gut
651
724
+
Thr
CGT
[ENA]
¢þ
>WENV182461760
OINV01001903
[OINV] human gut metagenome; human gut
665
740
+
Ile
GAT
[ENA]
¢þ
>WENV182461736
OINV01000139
[OINV] human gut metagenome; human gut
670
744
+
Ile2
CAT
[ENA]
¢þ
>WENV182461769
OINV01002711
[OINV] human gut metagenome; human gut
755
680
-
fMet
CAT
[ENA]
¢þ
>WENV182461755
OINV01001023
[OINV] human gut metagenome; human gut
764
690
-
Asn
GTT
[ENA]
¢þ
>WENV182461738
OINV01000244
[OINV] human gut metagenome; human gut
766
854
+
Ser
GGA
[ENA]
¢þ
>WENV182461745
OINV01000456
[OINV] human gut metagenome; human gut
931
860
-
Gln
CTG
[ENA]
¢þ
>WENV182461752
OINV01000839
[OINV] human gut metagenome; human gut
965
1041
+
Arg
CCG
[ENA]
¢þ
>WENV182461749
OINV01000533
[OINV] human gut metagenome; human gut
993
1065
+
Arg
CCT
[ENA]
¢þ
>WENV182461753
OINV01000839
[OINV] human gut metagenome; human gut
1100
1175
+
Thr
GGT
[ENA]
¢þ
>WENV182461741
OINV01000339
[OINV] human gut metagenome; human gut
1106
1021
-
Ser
TGA
[ENA]
¢þ
>WENV182461747
OINV01000479
[OINV] human gut metagenome; human gut
1224
1138
-
Leu
CAG
[ENA]
¢þ
>WENV182461754
OINV01000839
[OINV] human gut metagenome; human gut
1224
1299
+
Trp
CCA
[ENA]
¢þ
>WENV182461746
OINV01000479
[OINV] human gut metagenome; human gut
1321
1245
-
His
GTG
[ENA]
¢þ
>WENV182461740
OINV01000286
[OINV] human gut metagenome; human gut
1369
1442
+
Phe
GAA
[ENA]
¢þ
>WENV182461737
OINV01000184
[OINV] human gut metagenome; human gut
1544
1628
+
Leu
CAA
[ENA]
¢þ
>WENV182461734
OINV01000124
[OINV] human gut metagenome; human gut
1686
1762
+
Ile
GAT
[ENA]
¢þ
>WENV182461735
OINV01000124
[OINV] human gut metagenome; human gut
1791
1865
+
Ala
TGC
[ENA]
¢þ
>WENV182461742
OINV01000363
[OINV] human gut metagenome; human gut
2085
2012
-
Lys
TTT
[ENA]
¢þ
>WENV182461739
OINV01000246
[OINV] human gut metagenome; human gut
2211
2284
+
fMet
CAT
[ENA]
¢þ
>WENV182461729
OINV01000011
[OINV] human gut metagenome; human gut
2661
2736
+
Glu
TTC
[ENA]
¢þ
>WENV182461732
OINV01000080
[OINV] human gut metagenome; human gut
3075
3146
+
Gln
TTG
[ENA]
¢þ
>WENV182461728
OINV01000006
[OINV] human gut metagenome; human gut
3871
3798
-
Trp
CCA
[ENA]
¢þ
>WENV182461727
OINV01000006
[OINV] human gut metagenome; human gut
5231
5159
-
Thr
GGT
[ENA]
¢þ
>WENV182461726
OINV01000006
[OINV] human gut metagenome; human gut
5405
5322
-
Tyr
GTA
[ENA]
¢þ
>WENV182461730
OINV01000011
[OINV] human gut metagenome; human gut
6102
6178
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK