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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIOE] human gut metagenome; human gut
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182463615
OIOE01000527
[OIOE] human gut metagenome; human gut
18
91
+
Ile2
CAT
[ENA]
¢þ
>WENV182463651
OIOE01005382
[OIOE] human gut metagenome; human gut
72
148
+
Pro
TGG
[ENA]
¢þ
>WENV182463655
OIOE01006332
[OIOE] human gut metagenome; human gut
73
164
+
Ser
CGA
[ENA]
¢þ
>WENV182463634
OIOE01001811
[OIOE] human gut metagenome; human gut
100
27
-
Glu
TTC
[ENA]
¢þ
>WENV182463622
OIOE01000986
[OIOE] human gut metagenome; human gut
108
35
-
Glu
TTC
[ENA]
¢þ
>WENV182463656
OIOE01006440
[OIOE] human gut metagenome; human gut
113
188
+
Asn
GTT
[ENA]
¢þ
>WENV182463616
OIOE01000527
[OIOE] human gut metagenome; human gut
115
190
+
Asp
GTC
[ENA]
¢þ
>WENV182463643
OIOE01003931
[OIOE] human gut metagenome; human gut
160
86
-
Pro
GGG
[ENA]
¢þ
>WENV182463621
OIOE01000986
[OIOE] human gut metagenome; human gut
185
111
-
Asn
GTT
[ENA]
¢þ
>WENV182463633
OIOE01001811
[OIOE] human gut metagenome; human gut
190
115
-
Asn
GTT
[ENA]
¢þ
>WENV182463650
OIOE01005035
[OIOE] human gut metagenome; human gut
199
112
-
Ser
GCT
[ENA]
¢þ
>WENV182463652
OIOE01005988
[OIOE] human gut metagenome; human gut
207
132
-
Ile2
CAT
[ENA]
¢þ
>WENV182463642
OIOE01003931
[OIOE] human gut metagenome; human gut
243
170
-
Phe
GAA
[ENA]
¢þ
>WENV182463630
OIOE01001422
[OIOE] human gut metagenome; human gut
256
183
-
Gly
GCC
[ENA]
¢þ
>WENV182463617
OIOE01000527
[OIOE] human gut metagenome; human gut
292
368
+
Asp
GTC
[ENA]
¢þ
>WENV182463635
OIOE01003074
[OIOE] human gut metagenome; human gut
301
377
+
Pro
GGG
[ENA]
¢þ
>WENV182463647
OIOE01004369
[OIOE] human gut metagenome; human gut
318
234
-
Tyr
GTA
[ENA]
¢þ
>WENV182463641
OIOE01003931
[OIOE] human gut metagenome; human gut
322
248
-
Arg
ACG
[ENA]
¢þ
>WENV182463653
OIOE01006293
[OIOE] human gut metagenome; human gut
338
412
+
His
GTG
[ENA]
¢þ
>WENV182463644
OIOE01003973
[OIOE] human gut metagenome; human gut
345
419
+
Met
CAT
[ENA]
¢þ
>WENV182463636
OIOE01003285
[OIOE] human gut metagenome; human gut
372
297
-
Val
GAC
[ENA]
¢þ
>WENV182463618
OIOE01000527
[OIOE] human gut metagenome; human gut
372
447
+
Thr
GGT
[ENA]
¢þ
>WENV182463625
OIOE01001259
[OIOE] human gut metagenome; human gut
374
447
+
Gly
GCC
[ENA]
¢þ
>WENV182463646
OIOE01004369
[OIOE] human gut metagenome; human gut
402
327
-
Thr
TGT
[ENA]
¢þ
>WENV182463648
OIOE01004977
[OIOE] human gut metagenome; human gut
406
479
+
Lys
CTT
[ENA]
¢þ
>WENV182463639
OIOE01003722
[OIOE] human gut metagenome; human gut
412
496
+
Leu
CAA
[ENA]
¢þ
>WENV182463640
OIOE01003931
[OIOE] human gut metagenome; human gut
414
329
-
Ser
GCT
[ENA]
¢þ
>WENV182463654
OIOE01006293
[OIOE] human gut metagenome; human gut
420
494
+
Gln
TTG
[ENA]
¢þ
>WENV182463628
OIOE01001422
[OIOE] human gut metagenome; human gut
431
506
+
Pro
TGG
[ENA]
¢þ
>WENV182463605
OIOE01000116
[OIOE] human gut metagenome; human gut
457
384
-
Trp
CCA
[ENA]
¢þ
>WENV182463626
OIOE01001259
[OIOE] human gut metagenome; human gut
463
548
+
Leu
TAA
[ENA]
¢þ
>WENV182463645
OIOE01003978
[OIOE] human gut metagenome; human gut
478
406
-
Glu
TTC
[ENA]
¢þ
>WENV182463649
OIOE01004977
[OIOE] human gut metagenome; human gut
499
572
+
Lys
CTT
[ENA]
¢þ
>WENV182463629
OIOE01001422
[OIOE] human gut metagenome; human gut
526
596
+
Gly
TCC
[ENA]
¢þ
>WENV182463638
OIOE01003563
[OIOE] human gut metagenome; human gut
527
453
-
His
GTG
[ENA]
¢þ
>WENV182463632
OIOE01001536
[OIOE] human gut metagenome; human gut
599
671
+
Cys
GCA
[ENA]
¢þ
>WENV182463637
OIOE01003563
[OIOE] human gut metagenome; human gut
610
535
-
Arg
TCT
[ENA]
¢þ
>WENV182463606
OIOE01000168
[OIOE] human gut metagenome; human gut
710
783
+
fMet
CAT
[ENA]
¢þ
>WENV182463631
OIOE01001483
[OIOE] human gut metagenome; human gut
744
829
+
Ser
TGA
[ENA]
¢þ
>WENV182463623
OIOE01001135
[OIOE] human gut metagenome; human gut
761
837
+
Asp
GTC
[ENA]
¢þ
>WENV182463619
OIOE01000627
[OIOE] human gut metagenome; human gut
777
689
-
Ser
GGA
[ENA]
¢þ
>WENV182463624
OIOE01001135
[OIOE] human gut metagenome; human gut
846
921
+
Trp
CCA
[ENA]
¢þ
>WENV182463627
OIOE01001359
[OIOE] human gut metagenome; human gut
943
870
-
Lys
TTT
[ENA]
¢þ
>WENV182463597
OIOE01000052
[OIOE] human gut metagenome; human gut
1012
1086
+
Asn
GTT
[ENA]
¢þ
>WENV182463598
OIOE01000067
[OIOE] human gut metagenome; human gut
1119
1045
-
Ile2
CAT
[ENA]
¢þ
>WENV182463620
OIOE01000917
[OIOE] human gut metagenome; human gut
1131
1205
+
Asp
GTC
[ENA]
¢þ
>WENV182463601
OIOE01000095
[OIOE] human gut metagenome; human gut
1371
1297
-
Ala
TGC
[ENA]
¢þ
>WENV182463610
OIOE01000218
[OIOE] human gut metagenome; human gut
1383
1310
-
Pro
CGG
[ENA]
¢þ
>WENV182463609
OIOE01000218
[OIOE] human gut metagenome; human gut
1468
1395
-
Phe
GAA
[ENA]
¢þ
>WENV182463600
OIOE01000095
[OIOE] human gut metagenome; human gut
1476
1400
-
Ile
GAT
[ENA]
¢þ
>WENV182463614
OIOE01000344
[OIOE] human gut metagenome; human gut
1490
1416
-
His
GTG
[ENA]
¢þ
>WENV182463612
OIOE01000285
[OIOE] human gut metagenome; human gut
1514
1442
-
Arg
CCT
[ENA]
¢þ
>WENV182463604
OIOE01000116
[OIOE] human gut metagenome; human gut
1818
1746
-
Thr
GGT
[ENA]
¢þ
>WENV182463611
OIOE01000248
[OIOE] human gut metagenome; human gut
1836
1765
-
Gln
TTG
[ENA]
¢þ
>WENV182463613
OIOE01000317
[OIOE] human gut metagenome; human gut
1930
2001
+
Gln
TTG
[ENA]
¢þ
>WENV182463603
OIOE01000116
[OIOE] human gut metagenome; human gut
2015
1932
-
Tyr
GTA
[ENA]
¢þ
>WENV182463607
OIOE01000183
[OIOE] human gut metagenome; human gut
2127
2198
+
Gln
CTG
[ENA]
¢þ
>WENV182463602
OIOE01000116
[OIOE] human gut metagenome; human gut
2163
2089
-
Thr
TGT
[ENA]
¢þ
>WENV182463608
OIOE01000185
[OIOE] human gut metagenome; human gut
2252
2177
-
Pro
GGG
[ENA]
¢þ
>WENV182463599
OIOE01000089
[OIOE] human gut metagenome; human gut
2814
2730
-
Leu
CAA
[ENA]
¢þ
>WENV182463595
OIOE01000013
[OIOE] human gut metagenome; human gut
3831
3756
-
Glu
TTC
[ENA]
¢þ
>WENV182463596
OIOE01000042
[OIOE] human gut metagenome; human gut
3862
3937
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK