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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OIOJ] human gut metagenome; human gut
HIT:
134 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182464528
OIOJ01000004
[OIOJ] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182464660
OIOJ01007755
[OIOJ] human gut metagenome; human gut
8
81
+
Ala
TGC
[ENA]
¢þ
>WENV182464649
OIOJ01006433
[OIOJ] human gut metagenome; human gut
68
143
+
Ala
TGC
[ENA]
¢þ
>WENV182464608
OIOJ01001242
[OIOJ] human gut metagenome; human gut
76
1
-
Thr
GGT
[ENA]
¢þ
>WENV182464560
OIOJ01000066
[OIOJ] human gut metagenome; human gut
80
154
+
Asn
GTT
[ENA]
¢þ
>WENV182464587
OIOJ01000332
[OIOJ] human gut metagenome; human gut
87
2
-
Tyr
GTA
[ENA]
¢þ
>WENV182464633
OIOJ01002362
[OIOJ] human gut metagenome; human gut
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV182464657
OIOJ01007379
[OIOJ] human gut metagenome; human gut
155
80
-
Thr
GGT
[ENA]
¢þ
>WENV182464544
OIOJ01000028
[OIOJ] human gut metagenome; human gut
165
89
-
Val
TAC
[ENA]
¢þ
>WENV182464634
OIOJ01002362
[OIOJ] human gut metagenome; human gut
166
242
+
Ile
GAT
[ENA]
¢þ
>WENV182464595
OIOJ01000393
[OIOJ] human gut metagenome; human gut
169
95
-
Glu
CTC
[ENA]
¢þ
>WENV182464626
OIOJ01001840
[OIOJ] human gut metagenome; human gut
206
122
-
Leu
CAA
[ENA]
¢þ
>WENV182464617
OIOJ01001704
[OIOJ] human gut metagenome; human gut
221
296
+
Asn
GTT
[ENA]
¢þ
>WENV182464642
OIOJ01004619
[OIOJ] human gut metagenome; human gut
222
135
-
Ser
GCT
[ENA]
¢þ
>WENV182464568
OIOJ01000103
[OIOJ] human gut metagenome; human gut
224
131
-
Ser
GCT
[ENA]
¢þ
>WENV182464656
OIOJ01007379
[OIOJ] human gut metagenome; human gut
236
162
-
Gly
TCC
[ENA]
¢þ
>WENV182464551
OIOJ01000045
[OIOJ] human gut metagenome; human gut
242
169
-
fMet
CAT
[ENA]
¢þ
>WENV182464658
OIOJ01007672
[OIOJ] human gut metagenome; human gut
252
168
-
Leu
CAG
[ENA]
¢þ
>WENV182464571
OIOJ01000114
[OIOJ] human gut metagenome; human gut
278
203
-
Trp
CCA
[ENA]
¢þ
>WENV182464651
OIOJ01006736
[OIOJ] human gut metagenome; human gut
303
377
+
Gly
TCC
[ENA]
¢þ
>WENV182464652
OIOJ01006794
[OIOJ] human gut metagenome; human gut
310
397
+
Ser
TGA
[ENA]
¢þ
>WENV182464650
OIOJ01006611
[OIOJ] human gut metagenome; human gut
336
409
+
Lys
CTT
[ENA]
¢þ
>WENV182464637
OIOJ01003018
[OIOJ] human gut metagenome; human gut
342
414
+
Thr
CGT
[ENA]
¢þ
>WENV182464567
OIOJ01000103
[OIOJ] human gut metagenome; human gut
345
258
-
Ser
TGA
[ENA]
¢þ
>WENV182464659
OIOJ01007697
[OIOJ] human gut metagenome; human gut
366
454
+
Ser
CGA
[ENA]
¢þ
>WENV182464627
OIOJ01001915
[OIOJ] human gut metagenome; human gut
395
476
+
Leu
TAG
[ENA]
¢þ
>WENV182464645
OIOJ01005227
[OIOJ] human gut metagenome; human gut
397
323
-
Arg
CCT
[ENA]
¢þ
>WENV182464653
OIOJ01006794
[OIOJ] human gut metagenome; human gut
404
495
+
Ser
GGA
[ENA]
¢þ
>WENV182464615
OIOJ01001653
[OIOJ] human gut metagenome; human gut
411
487
+
Val
CAC
[ENA]
¢þ
>WENV182464534
OIOJ01000018
[OIOJ] human gut metagenome; human gut
414
487
+
Thr
CGT
[ENA]
¢þ
>WENV182464647
OIOJ01005766
[OIOJ] human gut metagenome; human gut
418
346
-
Trp
CCA
[ENA]
¢þ
>WENV182464585
OIOJ01000323
[OIOJ] human gut metagenome; human gut
423
349
-
Thr
TGT
[ENA]
¢þ
>WENV182464629
OIOJ01001946
[OIOJ] human gut metagenome; human gut
425
497
+
Gln
CTG
[ENA]
¢þ
>WENV182464655
OIOJ01007379
[OIOJ] human gut metagenome; human gut
437
353
-
Tyr
GTA
[ENA]
¢þ
>WENV182464610
OIOJ01001447
[OIOJ] human gut metagenome; human gut
474
401
-
Ile2
CAT
[ENA]
¢þ
>WENV182464648
OIOJ01006154
[OIOJ] human gut metagenome; human gut
486
581
+
SeC
TCA
[ENA]
¢þ
>WENV182464606
OIOJ01001160
[OIOJ] human gut metagenome; human gut
505
435
-
Gly
TCC
[ENA]
¢þ
>WENV182464654
OIOJ01007379
[OIOJ] human gut metagenome; human gut
521
446
-
Thr
TGT
[ENA]
¢þ
>WENV182464630
OIOJ01001946
[OIOJ] human gut metagenome; human gut
530
605
+
Pro
CGG
[ENA]
¢þ
>WENV182464636
OIOJ01002650
[OIOJ] human gut metagenome; human gut
539
610
+
Arg
CCG
[ENA]
¢þ
>WENV182464609
OIOJ01001384
[OIOJ] human gut metagenome; human gut
548
473
-
Thr
CGT
[ENA]
¢þ
>WENV182464605
OIOJ01001160
[OIOJ] human gut metagenome; human gut
588
511
-
Pro
TGG
[ENA]
¢þ
>WENV182464644
OIOJ01004798
[OIOJ] human gut metagenome; human gut
596
520
-
Arg
TCT
[ENA]
¢þ
>WENV182464598
OIOJ01000641
[OIOJ] human gut metagenome; human gut
649
575
-
Arg
CCT
[ENA]
¢þ
>WENV182464625
OIOJ01001826
[OIOJ] human gut metagenome; human gut
667
592
-
Phe
GAA
[ENA]
¢þ
>WENV182464628
OIOJ01001915
[OIOJ] human gut metagenome; human gut
672
590
-
Leu
GAG
[ENA]
¢þ
>WENV182464646
OIOJ01005617
[OIOJ] human gut metagenome; human gut
712
639
-
Ala
TGC
[ENA]
¢þ
>WENV182464604
OIOJ01001148
[OIOJ] human gut metagenome; human gut
719
647
-
Cys
GCA
[ENA]
¢þ
>WENV182464643
OIOJ01004798
[OIOJ] human gut metagenome; human gut
772
697
-
Ile2
CAT
[ENA]
¢þ
>WENV182464618
OIOJ01001773
[OIOJ] human gut metagenome; human gut
792
716
-
Arg
TCT
[ENA]
¢þ
>WENV182464639
OIOJ01003457
[OIOJ] human gut metagenome; human gut
793
717
-
Pro
CGG
[ENA]
¢þ
>WENV182464641
OIOJ01003788
[OIOJ] human gut metagenome; human gut
819
892
+
Val
GAC
[ENA]
¢þ
>WENV182464603
OIOJ01001148
[OIOJ] human gut metagenome; human gut
833
762
-
Glu
TTC
[ENA]
¢þ
>WENV182464594
OIOJ01000365
[OIOJ] human gut metagenome; human gut
901
815
-
Leu
CAG
[ENA]
¢þ
>WENV182464640
OIOJ01003532
[OIOJ] human gut metagenome; human gut
913
826
-
Leu
TAA
[ENA]
¢þ
>WENV182464593
OIOJ01000365
[OIOJ] human gut metagenome; human gut
997
922
-
His
GTG
[ENA]
¢þ
>WENV182464624
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1011
937
-
Phe
GAA
[ENA]
¢þ
>WENV182464600
OIOJ01000695
[OIOJ] human gut metagenome; human gut
1027
1111
+
Leu
CAA
[ENA]
¢þ
>WENV182464616
OIOJ01001669
[OIOJ] human gut metagenome; human gut
1033
1106
+
Ala
CGC
[ENA]
¢þ
>WENV182464578
OIOJ01000194
[OIOJ] human gut metagenome; human gut
1071
995
-
His
GTG
[ENA]
¢þ
>WENV182464638
OIOJ01003079
[OIOJ] human gut metagenome; human gut
1082
1007
-
Trp
CCA
[ENA]
¢þ
>WENV182464623
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1104
1030
-
fMet
CAT
[ENA]
¢þ
>WENV182464635
OIOJ01002500
[OIOJ] human gut metagenome; human gut
1105
1192
+
Leu
AAG
[ENA]
¢þ
>WENV182464592
OIOJ01000365
[OIOJ] human gut metagenome; human gut
1132
1056
-
Arg
CCG
[ENA]
¢þ
>WENV182464577
OIOJ01000194
[OIOJ] human gut metagenome; human gut
1155
1080
-
Arg
TCT
[ENA]
¢þ
>WENV182464602
OIOJ01001137
[OIOJ] human gut metagenome; human gut
1172
1081
-
Ser
GGA
[ENA]
¢þ
>WENV182464632
OIOJ01002125
[OIOJ] human gut metagenome; human gut
1200
1114
-
Leu
TAA
[ENA]
¢þ
>WENV182464622
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1206
1132
-
Thr
TGT
[ENA]
¢þ
>WENV182464601
OIOJ01000921
[OIOJ] human gut metagenome; human gut
1210
1285
+
Thr
CGT
[ENA]
¢þ
>WENV182464631
OIOJ01002125
[OIOJ] human gut metagenome; human gut
1286
1213
-
Cys
GCA
[ENA]
¢þ
>WENV182464621
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1306
1223
-
Tyr
GTA
[ENA]
¢þ
>WENV182464611
OIOJ01001507
[OIOJ] human gut metagenome; human gut
1325
1419
+
SeC
TCA
[ENA]
¢þ
>WENV182464614
OIOJ01001546
[OIOJ] human gut metagenome; human gut
1364
1282
-
Leu
TAG
[ENA]
¢þ
>WENV182464620
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1386
1313
-
Val
TAC
[ENA]
¢þ
>WENV182464619
OIOJ01001794
[OIOJ] human gut metagenome; human gut
1467
1392
-
Asp
GTC
[ENA]
¢þ
>WENV182464597
OIOJ01000512
[OIOJ] human gut metagenome; human gut
1492
1406
-
Leu
GAG
[ENA]
¢þ
>WENV182464613
OIOJ01001546
[OIOJ] human gut metagenome; human gut
1496
1423
-
Lys
TTT
[ENA]
¢þ
>WENV182464607
OIOJ01001242
[OIOJ] human gut metagenome; human gut
1497
1421
-
Ile2
CAT
[ENA]
¢þ
>WENV182464582
OIOJ01000293
[OIOJ] human gut metagenome; human gut
1558
1631
+
Ala
TGC
[ENA]
¢þ
>WENV182464612
OIOJ01001546
[OIOJ] human gut metagenome; human gut
1604
1533
-
Gln
TTG
[ENA]
¢þ
>WENV182464586
OIOJ01000332
[OIOJ] human gut metagenome; human gut
1810
1724
-
Leu
CAG
[ENA]
¢þ
>WENV182464569
OIOJ01000105
[OIOJ] human gut metagenome; human gut
1838
1917
+
Leu
CAA
[ENA]
¢þ
>WENV182464583
OIOJ01000293
[OIOJ] human gut metagenome; human gut
1960
1887
-
Asn
GTT
[ENA]
¢þ
>WENV182464599
OIOJ01000650
[OIOJ] human gut metagenome; human gut
2671
2746
+
Phe
GAA
[ENA]
¢þ
>WENV182464589
OIOJ01000334
[OIOJ] human gut metagenome; human gut
3042
2968
-
Ala
TGC
[ENA]
¢þ
>WENV182464591
OIOJ01000359
[OIOJ] human gut metagenome; human gut
3052
3128
+
Asn
GTT
[ENA]
¢þ
>WENV182464588
OIOJ01000334
[OIOJ] human gut metagenome; human gut
3133
3059
-
Ile
GAT
[ENA]
¢þ
>WENV182464596
OIOJ01000472
[OIOJ] human gut metagenome; human gut
3397
3322
-
Pro
TGG
[ENA]
¢þ
>WENV182464584
OIOJ01000314
[OIOJ] human gut metagenome; human gut
3529
3605
+
Arg
CCG
[ENA]
¢þ
>WENV182464590
OIOJ01000353
[OIOJ] human gut metagenome; human gut
4062
4137
+
Gly
CCC
[ENA]
¢þ
>WENV182464575
OIOJ01000151
[OIOJ] human gut metagenome; human gut
5587
5663
+
fMet
CAT
[ENA]
¢þ
>WENV182464581
OIOJ01000240
[OIOJ] human gut metagenome; human gut
5879
5805
-
Cys
GCA
[ENA]
¢þ
>WENV182464576
OIOJ01000161
[OIOJ] human gut metagenome; human gut
6057
6128
+
Gln
TTG
[ENA]
¢þ
>WENV182464579
OIOJ01000206
[OIOJ] human gut metagenome; human gut
6181
6264
+
Leu
TAA
[ENA]
¢þ
>WENV182464580
OIOJ01000222
[OIOJ] human gut metagenome; human gut
6234
6158
-
Pro
TGG
[ENA]
¢þ
>WENV182464540
OIOJ01000022
[OIOJ] human gut metagenome; human gut
6567
6482
-
Ser
TGA
[ENA]
¢þ
>WENV182464549
OIOJ01000041
[OIOJ] human gut metagenome; human gut
8043
7972
-
Gln
CTG
[ENA]
¢þ
>WENV182464573
OIOJ01000115
[OIOJ] human gut metagenome; human gut
8330
8256
-
Glu
TTC
[ENA]
¢þ
>WENV182464553
OIOJ01000056
[OIOJ] human gut metagenome; human gut
8354
8442
+
Ser
GGA
[ENA]
¢þ
>WENV182464572
OIOJ01000115
[OIOJ] human gut metagenome; human gut
8498
8422
-
Met
CAT
[ENA]
¢þ
>WENV182464574
OIOJ01000146
[OIOJ] human gut metagenome; human gut
8942
8866
-
Val
TAC
[ENA]
¢þ
>WENV182464570
OIOJ01000110
[OIOJ] human gut metagenome; human gut
8970
8885
-
Ser
TGA
[ENA]
¢þ
>WENV182464564
OIOJ01000089
[OIOJ] human gut metagenome; human gut
10062
9987
-
His
GTG
[ENA]
¢þ
>WENV182464559
OIOJ01000064
[OIOJ] human gut metagenome; human gut
11327
11254
-
Trp
CCA
[ENA]
¢þ
>WENV182464561
OIOJ01000077
[OIOJ] human gut metagenome; human gut
12160
12085
-
Phe
GAA
[ENA]
¢þ
>WENV182464558
OIOJ01000064
[OIOJ] human gut metagenome; human gut
12692
12620
-
Thr
GGT
[ENA]
¢þ
>WENV182464557
OIOJ01000064
[OIOJ] human gut metagenome; human gut
12893
12810
-
Tyr
GTA
[ENA]
¢þ
>WENV182464556
OIOJ01000064
[OIOJ] human gut metagenome; human gut
13010
12936
-
Thr
TGT
[ENA]
¢þ
>WENV182464554
OIOJ01000060
[OIOJ] human gut metagenome; human gut
14483
14571
+
Ser
GGA
[ENA]
¢þ
>WENV182464552
OIOJ01000055
[OIOJ] human gut metagenome; human gut
15315
15241
-
Thr
TGT
[ENA]
¢þ
>WENV182464545
OIOJ01000031
[OIOJ] human gut metagenome; human gut
15536
15461
-
Lys
TTT
[ENA]
¢þ
>WENV182464566
OIOJ01000099
[OIOJ] human gut metagenome; human gut
16449
16523
+
Asp
GTC
[ENA]
¢þ
>WENV182464565
OIOJ01000096
[OIOJ] human gut metagenome; human gut
16585
16660
+
Pro
TGG
[ENA]
¢þ
>WENV182464563
OIOJ01000085
[OIOJ] human gut metagenome; human gut
18575
18501
-
Glu
CTC
[ENA]
¢þ
>WENV182464539
OIOJ01000022
[OIOJ] human gut metagenome; human gut
20189
20262
+
Trp
CCA
[ENA]
¢þ
>WENV182464562
OIOJ01000079
[OIOJ] human gut metagenome; human gut
21219
21293
+
Arg
TCT
[ENA]
¢þ
>WENV182464550
OIOJ01000042
[OIOJ] human gut metagenome; human gut
25162
25089
-
Gly
CCC
[ENA]
¢þ
>WENV182464533
OIOJ01000014
[OIOJ] human gut metagenome; human gut
25807
25879
+
Arg
CCT
[ENA]
¢þ
>WENV182464555
OIOJ01000064
[OIOJ] human gut metagenome; human gut
26117
26191
+
Asn
GTT
[ENA]
¢þ
>WENV182464529
OIOJ01000007
[OIOJ] human gut metagenome; human gut
26770
26699
-
Gln
TTG
[ENA]
¢þ
>WENV182464536
OIOJ01000021
[OIOJ] human gut metagenome; human gut
41129
41202
+
Lys
CTT
[ENA]
¢þ
>WENV182464537
OIOJ01000021
[OIOJ] human gut metagenome; human gut
41226
41299
+
Lys
CTT
[ENA]
¢þ
>WENV182464538
OIOJ01000021
[OIOJ] human gut metagenome; human gut
41319
41392
+
Lys
CTT
[ENA]
¢þ
>WENV182464542
OIOJ01000026
[OIOJ] human gut metagenome; human gut
42733
42659
-
Glu
TTC
[ENA]
¢þ
>WENV182464548
OIOJ01000041
[OIOJ] human gut metagenome; human gut
42868
42943
+
Pro
GGG
[ENA]
¢þ
>WENV182464543
OIOJ01000027
[OIOJ] human gut metagenome; human gut
46339
46413
+
Ala
GGC
[ENA]
¢þ
>WENV182464541
OIOJ01000024
[OIOJ] human gut metagenome; human gut
53524
53606
+
Leu
TAG
[ENA]
¢þ
>WENV182464546
OIOJ01000033
[OIOJ] human gut metagenome; human gut
54136
54064
-
Glu
TTC
[ENA]
¢þ
>WENV182464547
OIOJ01000034
[OIOJ] human gut metagenome; human gut
54838
54912
+
Cys
GCA
[ENA]
¢þ
>WENV182464535
OIOJ01000020
[OIOJ] human gut metagenome; human gut
72090
72164
+
Thr
TGT
[ENA]
¢þ
>WENV182464532
OIOJ01000012
[OIOJ] human gut metagenome; human gut
72801
72727
-
Ile2
CAT
[ENA]
¢þ
>WENV182464531
OIOJ01000009
[OIOJ] human gut metagenome; human gut
100590
100515
-
Phe
GAA
[ENA]
¢þ
>WENV182464530
OIOJ01000009
[OIOJ] human gut metagenome; human gut
100771
100844
+
Pro
CGG
[ENA]
¢þ
>WENV182464527
OIOJ01000003
[OIOJ] human gut metagenome; human gut
158527
158455
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
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