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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OIPJ] human gut metagenome; human gut
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182471291
OIPJ01001674
[OIPJ] human gut metagenome; human gut
3
77
+
Met
CAT
[ENA]
¢þ
>WENV182471304
OIPJ01003717
[OIPJ] human gut metagenome; human gut
101
177
+
Asp
GTC
[ENA]
¢þ
>WENV182471299
OIPJ01003287
[OIPJ] human gut metagenome; human gut
105
188
+
Tyr
GTA
[ENA]
¢þ
>WENV182471311
OIPJ01004094
[OIPJ] human gut metagenome; human gut
132
58
-
His
GTG
[ENA]
¢þ
>WENV182471292
OIPJ01001674
[OIPJ] human gut metagenome; human gut
138
214
+
Met
CAT
[ENA]
¢þ
>WENV182471265
OIPJ01000011
[OIPJ] human gut metagenome; human gut
168
93
-
Val
TAC
[ENA]
¢þ
>WENV182471295
OIPJ01002507
[OIPJ] human gut metagenome; human gut
172
245
+
Lys
TTT
[ENA]
¢þ
>WENV182471305
OIPJ01003717
[OIPJ] human gut metagenome; human gut
186
261
+
Trp
CCA
[ENA]
¢þ
>WENV182471277
OIPJ01000254
[OIPJ] human gut metagenome; human gut
210
283
+
Phe
GAA
[ENA]
¢þ
>WENV182471300
OIPJ01003287
[OIPJ] human gut metagenome; human gut
217
289
+
Thr
TGT
[ENA]
¢þ
>WENV182471298
OIPJ01003266
[OIPJ] human gut metagenome; human gut
219
295
+
fMet
CAT
[ENA]
¢þ
>WENV182471296
OIPJ01002577
[OIPJ] human gut metagenome; human gut
240
167
-
Thr
CGT
[ENA]
¢þ
>WENV182471293
OIPJ01001699
[OIPJ] human gut metagenome; human gut
242
318
+
Arg
ACG
[ENA]
¢þ
>WENV182471314
OIPJ01005838
[OIPJ] human gut metagenome; human gut
264
348
+
Leu
CAA
[ENA]
¢þ
>WENV182471289
OIPJ01001341
[OIPJ] human gut metagenome; human gut
278
207
-
Gln
TTG
[ENA]
¢þ
>WENV182471307
OIPJ01003880
[OIPJ] human gut metagenome; human gut
289
362
+
Gln
CTG
[ENA]
¢þ
>WENV182471278
OIPJ01000254
[OIPJ] human gut metagenome; human gut
295
368
+
Pro
CGG
[ENA]
¢þ
>WENV182471312
OIPJ01004376
[OIPJ] human gut metagenome; human gut
303
228
-
Ile2
CAT
[ENA]
¢þ
>WENV182471301
OIPJ01003287
[OIPJ] human gut metagenome; human gut
332
406
+
Ile2
CAT
[ENA]
¢þ
>WENV182471313
OIPJ01004686
[OIPJ] human gut metagenome; human gut
355
279
-
Pro
GGG
[ENA]
¢þ
>WENV182471310
OIPJ01003990
[OIPJ] human gut metagenome; human gut
364
289
-
Thr
GGT
[ENA]
¢þ
>WENV182471270
OIPJ01000042
[OIPJ] human gut metagenome; human gut
372
443
+
Gln
TTG
[ENA]
¢þ
>WENV182471308
OIPJ01003880
[OIPJ] human gut metagenome; human gut
397
472
+
Pro
CGG
[ENA]
¢þ
>WENV182471302
OIPJ01003287
[OIPJ] human gut metagenome; human gut
428
503
+
Asp
GTC
[ENA]
¢þ
>WENV182471309
OIPJ01003990
[OIPJ] human gut metagenome; human gut
445
371
-
Gly
TCC
[ENA]
¢þ
>WENV182471294
OIPJ01002071
[OIPJ] human gut metagenome; human gut
458
531
+
Lys
CTT
[ENA]
¢þ
>WENV182471287
OIPJ01000739
[OIPJ] human gut metagenome; human gut
461
386
-
Pro
GGG
[ENA]
¢þ
>WENV182471297
OIPJ01002663
[OIPJ] human gut metagenome; human gut
476
564
+
Ser
GGA
[ENA]
¢þ
>WENV182471279
OIPJ01000290
[OIPJ] human gut metagenome; human gut
517
443
-
Ile2
CAT
[ENA]
¢þ
>WENV182471303
OIPJ01003287
[OIPJ] human gut metagenome; human gut
529
603
+
Val
TAC
[ENA]
¢þ
>WENV182471306
OIPJ01003794
[OIPJ] human gut metagenome; human gut
553
478
-
Gly
GCC
[ENA]
¢þ
>WENV182471274
OIPJ01000112
[OIPJ] human gut metagenome; human gut
787
872
+
Ser
TGA
[ENA]
¢þ
>WENV182471290
OIPJ01001652
[OIPJ] human gut metagenome; human gut
791
719
-
Cys
GCA
[ENA]
¢þ
>WENV182471288
OIPJ01001174
[OIPJ] human gut metagenome; human gut
945
1019
+
Ala
GGC
[ENA]
¢þ
>WENV182471285
OIPJ01000689
[OIPJ] human gut metagenome; human gut
1085
1158
+
Gly
GCC
[ENA]
¢þ
>WENV182471266
OIPJ01000020
[OIPJ] human gut metagenome; human gut
1088
1162
+
Thr
TGT
[ENA]
¢þ
>WENV182471282
OIPJ01000572
[OIPJ] human gut metagenome; human gut
1120
1195
+
Pro
TGG
[ENA]
¢þ
>WENV182471286
OIPJ01000689
[OIPJ] human gut metagenome; human gut
1172
1256
+
Leu
TAA
[ENA]
¢þ
>WENV182471283
OIPJ01000572
[OIPJ] human gut metagenome; human gut
1199
1269
+
Gly
TCC
[ENA]
¢þ
>WENV182471273
OIPJ01000091
[OIPJ] human gut metagenome; human gut
1229
1301
+
Glu
TTC
[ENA]
¢þ
>WENV182471267
OIPJ01000020
[OIPJ] human gut metagenome; human gut
1236
1319
+
Tyr
GTA
[ENA]
¢þ
>WENV182471284
OIPJ01000572
[OIPJ] human gut metagenome; human gut
1321
1395
+
Arg
TCT
[ENA]
¢þ
>WENV182471276
OIPJ01000196
[OIPJ] human gut metagenome; human gut
1374
1290
-
Leu
CAA
[ENA]
¢þ
>WENV182471268
OIPJ01000020
[OIPJ] human gut metagenome; human gut
1433
1505
+
Thr
GGT
[ENA]
¢þ
>WENV182471281
OIPJ01000353
[OIPJ] human gut metagenome; human gut
1526
1599
+
fMet
CAT
[ENA]
¢þ
>WENV182471271
OIPJ01000079
[OIPJ] human gut metagenome; human gut
1686
1762
+
Ile
GAT
[ENA]
¢þ
>WENV182471280
OIPJ01000339
[OIPJ] human gut metagenome; human gut
1746
1672
-
Ala
TGC
[ENA]
¢þ
>WENV182471272
OIPJ01000079
[OIPJ] human gut metagenome; human gut
1791
1865
+
Ala
TGC
[ENA]
¢þ
>WENV182471275
OIPJ01000144
[OIPJ] human gut metagenome; human gut
1985
2057
+
Arg
CCT
[ENA]
¢þ
>WENV182471262
OIPJ01000010
[OIPJ] human gut metagenome; human gut
2379
2454
+
Ile
GAT
[ENA]
¢þ
>WENV182471263
OIPJ01000010
[OIPJ] human gut metagenome; human gut
2540
2616
+
Ile
GAT
[ENA]
¢þ
>WENV182471269
OIPJ01000020
[OIPJ] human gut metagenome; human gut
2798
2871
+
Trp
CCA
[ENA]
¢þ
>WENV182471261
OIPJ01000008
[OIPJ] human gut metagenome; human gut
4122
4047
-
Glu
TTC
[ENA]
¢þ
>WENV182471264
OIPJ01000010
[OIPJ] human gut metagenome; human gut
5939
6012
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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