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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OIPX] human gut metagenome; human gut
HIT:
112 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182474884
OIPX01004684
[OIPX] human gut metagenome; human gut
8
81
+
Lys
TTT
[ENA]
¢þ
>WENV182474896
OIPX01006569
[OIPX] human gut metagenome; human gut
48
137
+
Ser
CGA
[ENA]
¢þ
>WENV182474898
OIPX01006731
[OIPX] human gut metagenome; human gut
58
133
+
Lys
CTT
[ENA]
¢þ
>WENV182474917
OIPX01009230
[OIPX] human gut metagenome; human gut
63
136
+
Trp
CCA
[ENA]
¢þ
>WENV182474913
OIPX01008584
[OIPX] human gut metagenome; human gut
63
138
+
Thr
TGT
[ENA]
¢þ
>WENV182474899
OIPX01006764
[OIPX] human gut metagenome; human gut
71
143
+
Arg
CCG
[ENA]
¢þ
>WENV182474875
OIPX01003866
[OIPX] human gut metagenome; human gut
71
144
+
Lys
CTT
[ENA]
¢þ
>WENV182474857
OIPX01002204
[OIPX] human gut metagenome; human gut
82
155
+
Pro
CGG
[ENA]
¢þ
>WENV182474877
OIPX01003947
[OIPX] human gut metagenome; human gut
101
28
-
Gly
CCC
[ENA]
¢þ
>WENV182474881
OIPX01004660
[OIPX] human gut metagenome; human gut
103
179
+
Arg
CCG
[ENA]
¢þ
>WENV182474887
OIPX01004789
[OIPX] human gut metagenome; human gut
109
33
-
His
GTG
[ENA]
¢þ
>WENV182474901
OIPX01007186
[OIPX] human gut metagenome; human gut
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV182474911
OIPX01008076
[OIPX] human gut metagenome; human gut
122
41
-
Leu
TAG
[ENA]
¢þ
>WENV182474867
OIPX01002767
[OIPX] human gut metagenome; human gut
126
50
-
Val
CAC
[ENA]
¢þ
>WENV182474895
OIPX01005724
[OIPX] human gut metagenome; human gut
136
218
+
Leu
CAA
[ENA]
¢þ
>WENV182474894
OIPX01005591
[OIPX] human gut metagenome; human gut
144
56
-
Ser
GGA
[ENA]
¢þ
>WENV182474914
OIPX01008584
[OIPX] human gut metagenome; human gut
147
231
+
Tyr
GTA
[ENA]
¢þ
>WENV182474906
OIPX01007255
[OIPX] human gut metagenome; human gut
148
74
-
Cys
GCA
[ENA]
¢þ
>WENV182474859
OIPX01002214
[OIPX] human gut metagenome; human gut
159
83
-
Trp
CCA
[ENA]
¢þ
>WENV182474886
OIPX01004789
[OIPX] human gut metagenome; human gut
192
117
-
Arg
TCT
[ENA]
¢þ
>WENV182474902
OIPX01007186
[OIPX] human gut metagenome; human gut
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV182474893
OIPX01005428
[OIPX] human gut metagenome; human gut
204
129
-
Arg
ACG
[ENA]
¢þ
>WENV182474907
OIPX01007471
[OIPX] human gut metagenome; human gut
205
133
-
Arg
CCT
[ENA]
¢þ
>WENV182474840
OIPX01001386
[OIPX] human gut metagenome; human gut
210
137
-
Thr
CGT
[ENA]
¢þ
>WENV182474842
OIPX01001464
[OIPX] human gut metagenome; human gut
229
155
-
Ala
GGC
[ENA]
¢þ
>WENV182474905
OIPX01007255
[OIPX] human gut metagenome; human gut
235
161
-
Gly
GCC
[ENA]
¢þ
>WENV182474882
OIPX01004660
[OIPX] human gut metagenome; human gut
238
313
+
His
GTG
[ENA]
¢þ
>WENV182474874
OIPX01003777
[OIPX] human gut metagenome; human gut
247
172
-
His
GTG
[ENA]
¢þ
>WENV182474912
OIPX01008544
[OIPX] human gut metagenome; human gut
270
197
-
Gly
CCC
[ENA]
¢þ
>WENV182474897
OIPX01006583
[OIPX] human gut metagenome; human gut
271
188
-
Leu
TAA
[ENA]
¢þ
>WENV182474904
OIPX01007255
[OIPX] human gut metagenome; human gut
318
243
-
Phe
GAA
[ENA]
¢þ
>WENV182474883
OIPX01004660
[OIPX] human gut metagenome; human gut
334
420
+
Leu
CAG
[ENA]
¢þ
>WENV182474915
OIPX01008584
[OIPX] human gut metagenome; human gut
348
422
+
Gly
TCC
[ENA]
¢þ
>WENV182474908
OIPX01007618
[OIPX] human gut metagenome; human gut
389
313
-
Pro
GGG
[ENA]
¢þ
>WENV182474903
OIPX01007255
[OIPX] human gut metagenome; human gut
399
324
-
Asp
GTC
[ENA]
¢þ
>WENV182474888
OIPX01005233
[OIPX] human gut metagenome; human gut
411
487
+
Met
CAT
[ENA]
¢þ
>WENV182474845
OIPX01001547
[OIPX] human gut metagenome; human gut
412
485
+
Gln
CTG
[ENA]
¢þ
>WENV182474916
OIPX01008584
[OIPX] human gut metagenome; human gut
429
504
+
Thr
GGT
[ENA]
¢þ
>WENV182474918
OIPX01009429
[OIPX] human gut metagenome; human gut
440
513
+
fMet
CAT
[ENA]
¢þ
>WENV182474870
OIPX01003045
[OIPX] human gut metagenome; human gut
487
578
+
Ser
CGA
[ENA]
¢þ
>WENV182474871
OIPX01003151
[OIPX] human gut metagenome; human gut
492
567
+
Lys
TTT
[ENA]
¢þ
>WENV182474889
OIPX01005233
[OIPX] human gut metagenome; human gut
498
582
+
Leu
TAG
[ENA]
¢þ
>WENV182474909
OIPX01007955
[OIPX] human gut metagenome; human gut
501
588
+
Ser
GGA
[ENA]
¢þ
>WENV182474900
OIPX01006974
[OIPX] human gut metagenome; human gut
538
626
+
Ser
GGA
[ENA]
¢þ
>WENV182474869
OIPX01003017
[OIPX] human gut metagenome; human gut
546
462
-
Leu
TAA
[ENA]
¢þ
>WENV182474880
OIPX01004040
[OIPX] human gut metagenome; human gut
576
502
-
Asp
GTC
[ENA]
¢þ
>WENV182474824
OIPX01000745
[OIPX] human gut metagenome; human gut
604
531
-
Lys
CTT
[ENA]
¢þ
>WENV182474890
OIPX01005233
[OIPX] human gut metagenome; human gut
606
677
+
Gln
TTG
[ENA]
¢þ
>WENV182474879
OIPX01003981
[OIPX] human gut metagenome; human gut
616
691
+
Thr
CGT
[ENA]
¢þ
>WENV182474868
OIPX01003017
[OIPX] human gut metagenome; human gut
633
560
-
Gly
GCC
[ENA]
¢þ
>WENV182474910
OIPX01007969
[OIPX] human gut metagenome; human gut
636
550
-
Leu
GAG
[ENA]
¢þ
>WENV182474892
OIPX01005295
[OIPX] human gut metagenome; human gut
665
740
+
Ile2
CAT
[ENA]
¢þ
>WENV182474872
OIPX01003324
[OIPX] human gut metagenome; human gut
703
632
-
Gln
TTG
[ENA]
¢þ
>WENV182474885
OIPX01004724
[OIPX] human gut metagenome; human gut
709
800
+
Ser
GGA
[ENA]
¢þ
>WENV182474846
OIPX01001551
[OIPX] human gut metagenome; human gut
736
823
+
Ser
GCT
[ENA]
¢þ
>WENV182474891
OIPX01005289
[OIPX] human gut metagenome; human gut
750
675
-
Asn
GTT
[ENA]
¢þ
>WENV182474836
OIPX01001283
[OIPX] human gut metagenome; human gut
860
934
+
Thr
TGT
[ENA]
¢þ
>WENV182474821
OIPX01000485
[OIPX] human gut metagenome; human gut
865
940
+
Glu
TTC
[ENA]
¢þ
>WENV182474834
OIPX01001091
[OIPX] human gut metagenome; human gut
871
786
-
Tyr
GTA
[ENA]
¢þ
>WENV182474860
OIPX01002305
[OIPX] human gut metagenome; human gut
874
800
-
Thr
TGT
[ENA]
¢þ
>WENV182474847
OIPX01001551
[OIPX] human gut metagenome; human gut
901
973
+
Glu
CTC
[ENA]
¢þ
>WENV182474839
OIPX01001350
[OIPX] human gut metagenome; human gut
906
813
-
Ser
GCT
[ENA]
¢þ
>WENV182474833
OIPX01000974
[OIPX] human gut metagenome; human gut
942
871
-
Gln
TTG
[ENA]
¢þ
>WENV182474862
OIPX01002363
[OIPX] human gut metagenome; human gut
965
890
-
Val
TAC
[ENA]
¢þ
>WENV182474843
OIPX01001493
[OIPX] human gut metagenome; human gut
998
1069
+
Gln
CTG
[ENA]
¢þ
>WENV182474856
OIPX01002105
[OIPX] human gut metagenome; human gut
1007
1083
+
Arg
CCG
[ENA]
¢þ
>WENV182474838
OIPX01001350
[OIPX] human gut metagenome; human gut
1026
939
-
Ser
TGA
[ENA]
¢þ
>WENV182474848
OIPX01001628
[OIPX] human gut metagenome; human gut
1031
1106
+
Phe
GAA
[ENA]
¢þ
>WENV182474841
OIPX01001414
[OIPX] human gut metagenome; human gut
1072
998
-
Ile2
CAT
[ENA]
¢þ
>WENV182474863
OIPX01002435
[OIPX] human gut metagenome; human gut
1090
1006
-
Leu
CAA
[ENA]
¢þ
>WENV182474876
OIPX01003916
[OIPX] human gut metagenome; human gut
1154
1079
-
Pro
TGG
[ENA]
¢þ
>WENV182474850
OIPX01001661
[OIPX] human gut metagenome; human gut
1180
1252
+
Glu
TTC
[ENA]
¢þ
>WENV182474878
OIPX01003973
[OIPX] human gut metagenome; human gut
1201
1126
-
Gly
CCC
[ENA]
¢þ
>WENV182474873
OIPX01003422
[OIPX] human gut metagenome; human gut
1229
1321
+
Ser
GCT
[ENA]
¢þ
>WENV182474864
OIPX01002529
[OIPX] human gut metagenome; human gut
1248
1334
+
Leu
CAG
[ENA]
¢þ
>WENV182474849
OIPX01001628
[OIPX] human gut metagenome; human gut
1249
1324
+
Gly
GCC
[ENA]
¢þ
>WENV182474854
OIPX01001926
[OIPX] human gut metagenome; human gut
1252
1177
-
Thr
GGT
[ENA]
¢þ
>WENV182474866
OIPX01002616
[OIPX] human gut metagenome; human gut
1253
1327
+
Ala
GGC
[ENA]
¢þ
>WENV182474853
OIPX01001926
[OIPX] human gut metagenome; human gut
1332
1256
-
Asp
GTC
[ENA]
¢þ
>WENV182474832
OIPX01000946
[OIPX] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¢þ
>WENV182474823
OIPX01000575
[OIPX] human gut metagenome; human gut
1434
1506
+
Cys
GCA
[ENA]
¢þ
>WENV182474831
OIPX01000946
[OIPX] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¢þ
>WENV182474852
OIPX01001926
[OIPX] human gut metagenome; human gut
1584
1509
-
Trp
CCA
[ENA]
¢þ
>WENV182474844
OIPX01001538
[OIPX] human gut metagenome; human gut
1596
1524
-
Pro
TGG
[ENA]
¢þ
>WENV182474828
OIPX01000922
[OIPX] human gut metagenome; human gut
1598
1523
-
Val
GAC
[ENA]
¢þ
>WENV182474865
OIPX01002570
[OIPX] human gut metagenome; human gut
1617
1691
+
Ile2
CAT
[ENA]
¢þ
>WENV182474861
OIPX01002342
[OIPX] human gut metagenome; human gut
1745
1660
-
Leu
TAA
[ENA]
¢þ
>WENV182474830
OIPX01000942
[OIPX] human gut metagenome; human gut
1814
1899
+
Ser
TGA
[ENA]
¢þ
>WENV182474858
OIPX01002211
[OIPX] human gut metagenome; human gut
1819
1746
-
Pro
CGG
[ENA]
¢þ
>WENV182474855
OIPX01002046
[OIPX] human gut metagenome; human gut
1858
1937
+
Leu
CAA
[ENA]
¢þ
>WENV182474837
OIPX01001333
[OIPX] human gut metagenome; human gut
1962
2035
+
Arg
CCT
[ENA]
¢þ
>WENV182474851
OIPX01001727
[OIPX] human gut metagenome; human gut
2141
2065
-
Ala
TGC
[ENA]
¢þ
>WENV182474835
OIPX01001161
[OIPX] human gut metagenome; human gut
2165
2091
-
Gly
TCC
[ENA]
¢þ
>WENV182474810
OIPX01000033
[OIPX] human gut metagenome; human gut
2388
2314
-
Arg
TCT
[ENA]
¢þ
>WENV182474819
OIPX01000478
[OIPX] human gut metagenome; human gut
2672
2755
+
Tyr
GTA
[ENA]
¢þ
>WENV182474827
OIPX01000879
[OIPX] human gut metagenome; human gut
2738
2814
+
Met
CAT
[ENA]
¢þ
>WENV182474822
OIPX01000540
[OIPX] human gut metagenome; human gut
2819
2737
-
Leu
TAG
[ENA]
¢þ
>WENV182474820
OIPX01000478
[OIPX] human gut metagenome; human gut
2848
2920
+
Thr
GGT
[ENA]
¢þ
>WENV182474813
OIPX01000123
[OIPX] human gut metagenome; human gut
2858
2784
-
Asn
GTT
[ENA]
¢þ
>WENV182474816
OIPX01000259
[OIPX] human gut metagenome; human gut
2940
2865
-
Ile2
CAT
[ENA]
¢þ
>WENV182474825
OIPX01000754
[OIPX] human gut metagenome; human gut
3074
3150
+
Met
CAT
[ENA]
¢þ
>WENV182474829
OIPX01000926
[OIPX] human gut metagenome; human gut
3140
3065
-
Lys
TTT
[ENA]
¢þ
>WENV182474826
OIPX01000754
[OIPX] human gut metagenome; human gut
3242
3313
+
Glu
TTC
[ENA]
¢þ
>WENV182474818
OIPX01000430
[OIPX] human gut metagenome; human gut
3579
3651
+
Glu
TTC
[ENA]
¢þ
>WENV182474817
OIPX01000356
[OIPX] human gut metagenome; human gut
4028
4116
+
Ser
GGA
[ENA]
¢þ
>WENV182474812
OIPX01000110
[OIPX] human gut metagenome; human gut
4197
4271
+
His
GTG
[ENA]
¢þ
>WENV182474814
OIPX01000159
[OIPX] human gut metagenome; human gut
4267
4340
+
Phe
GAA
[ENA]
¢þ
>WENV182474809
OIPX01000015
[OIPX] human gut metagenome; human gut
4604
4688
+
Leu
CAA
[ENA]
¢þ
>WENV182474815
OIPX01000258
[OIPX] human gut metagenome; human gut
5574
5499
-
Pro
GGG
[ENA]
¢þ
>WENV182474811
OIPX01000105
[OIPX] human gut metagenome; human gut
7607
7531
-
Asn
GTT
[ENA]
¢þ
>WENV182474808
OIPX01000012
[OIPX] human gut metagenome; human gut
11036
11108
+
Arg
CCT
[ENA]
¢þ
>WENV182474807
OIPX01000005
[OIPX] human gut metagenome; human gut
15180
15109
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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