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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OIQB] human gut metagenome; human gut
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182475569
OIQB01006647
[OIQB] human gut metagenome; human gut
8
83
+
Lys
TTT
[ENA]
¢þ
>WENV182475558
OIQB01003765
[OIQB] human gut metagenome; human gut
41
116
+
Asn
GTT
[ENA]
¢þ
>WENV182475568
OIQB01005907
[OIQB] human gut metagenome; human gut
64
137
+
Pro
CGG
[ENA]
¢þ
>WENV182475582
OIQB01009452
[OIQB] human gut metagenome; human gut
74
1
-
Thr
CGT
[ENA]
¢þ
>WENV182475532
OIQB01001444
[OIQB] human gut metagenome; human gut
74
148
+
Ala
TGC
[ENA]
¢þ
>WENV182475584
OIQB01009504
[OIQB] human gut metagenome; human gut
95
22
-
Lys
CTT
[ENA]
¢þ
>WENV182475577
OIQB01007844
[OIQB] human gut metagenome; human gut
99
174
+
Val
TAC
[ENA]
¢þ
>WENV182475585
OIQB01009518
[OIQB] human gut metagenome; human gut
124
210
+
Leu
GAG
[ENA]
¢þ
>WENV182475555
OIQB01003609
[OIQB] human gut metagenome; human gut
132
204
+
Glu
CTC
[ENA]
¢þ
>WENV182475579
OIQB01008405
[OIQB] human gut metagenome; human gut
146
220
+
Gly
CCC
[ENA]
¢þ
>WENV182475580
OIQB01008423
[OIQB] human gut metagenome; human gut
147
222
+
Trp
CCA
[ENA]
¢þ
>WENV182475572
OIQB01007239
[OIQB] human gut metagenome; human gut
148
73
-
Ala
TGC
[ENA]
¢þ
>WENV182475570
OIQB01007179
[OIQB] human gut metagenome; human gut
179
91
-
Ser
GGA
[ENA]
¢þ
>WENV182475564
OIQB01004430
[OIQB] human gut metagenome; human gut
179
95
-
Leu
CAA
[ENA]
¢þ
>WENV182475578
OIQB01007844
[OIQB] human gut metagenome; human gut
179
254
+
Lys
TTT
[ENA]
¢þ
>WENV182475571
OIQB01007239
[OIQB] human gut metagenome; human gut
235
159
-
Ile
GAT
[ENA]
¢þ
>WENV182475575
OIQB01007420
[OIQB] human gut metagenome; human gut
273
348
+
Gly
CCC
[ENA]
¢þ
>WENV182475544
OIQB01002764
[OIQB] human gut metagenome; human gut
277
348
+
Glu
TTC
[ENA]
¢þ
>WENV182475524
OIQB01001204
[OIQB] human gut metagenome; human gut
312
240
-
Arg
CCT
[ENA]
¢þ
>WENV182475566
OIQB01005746
[OIQB] human gut metagenome; human gut
320
395
+
Ile2
CAT
[ENA]
¢þ
>WENV182475494
OIQB01000083
[OIQB] human gut metagenome; human gut
332
406
+
Ala
GGC
[ENA]
¢þ
>WENV182475583
OIQB01009490
[OIQB] human gut metagenome; human gut
346
271
-
Thr
CGT
[ENA]
¢þ
>WENV182475562
OIQB01004190
[OIQB] human gut metagenome; human gut
355
437
+
Leu
TAG
[ENA]
¢þ
>WENV182475581
OIQB01008674
[OIQB] human gut metagenome; human gut
362
436
+
Arg
TCT
[ENA]
¢þ
>WENV182475574
OIQB01007297
[OIQB] human gut metagenome; human gut
412
319
-
Ser
GCT
[ENA]
¢þ
>WENV182475507
OIQB01000582
[OIQB] human gut metagenome; human gut
431
356
-
His
GTG
[ENA]
¢þ
>WENV182475545
OIQB01002790
[OIQB] human gut metagenome; human gut
439
366
-
Ala
CGC
[ENA]
¢þ
>WENV182475554
OIQB01003373
[OIQB] human gut metagenome; human gut
455
373
-
Leu
CAA
[ENA]
¢þ
>WENV182475576
OIQB01007711
[OIQB] human gut metagenome; human gut
467
395
-
Arg
CCT
[ENA]
¢þ
>WENV182475552
OIQB01003218
[OIQB] human gut metagenome; human gut
471
552
+
Leu
TAG
[ENA]
¢þ
>WENV182475567
OIQB01005840
[OIQB] human gut metagenome; human gut
515
601
+
Leu
CAG
[ENA]
¢þ
>WENV182475573
OIQB01007297
[OIQB] human gut metagenome; human gut
532
445
-
Ser
TGA
[ENA]
¢þ
>WENV182475565
OIQB01005419
[OIQB] human gut metagenome; human gut
585
510
-
Gly
CCC
[ENA]
¢þ
>WENV182475551
OIQB01003120
[OIQB] human gut metagenome; human gut
594
669
+
Thr
GGT
[ENA]
¢þ
>WENV182475546
OIQB01002803
[OIQB] human gut metagenome; human gut
630
557
-
Lys
TTT
[ENA]
¢þ
>WENV182475547
OIQB01002897
[OIQB] human gut metagenome; human gut
707
631
-
Asn
GTT
[ENA]
¢þ
>WENV182475557
OIQB01003697
[OIQB] human gut metagenome; human gut
722
647
-
Lys
CTT
[ENA]
¢þ
>WENV182475550
OIQB01003047
[OIQB] human gut metagenome; human gut
763
836
+
Arg
CCT
[ENA]
¢þ
>WENV182475534
OIQB01001535
[OIQB] human gut metagenome; human gut
778
705
-
Gly
GCC
[ENA]
¢þ
>WENV182475559
OIQB01003793
[OIQB] human gut metagenome; human gut
788
700
-
Ser
GGA
[ENA]
¢þ
>WENV182475548
OIQB01002943
[OIQB] human gut metagenome; human gut
793
718
-
Asn
GTT
[ENA]
¢þ
>WENV182475556
OIQB01003697
[OIQB] human gut metagenome; human gut
800
726
-
Glu
CTC
[ENA]
¢þ
>WENV182475537
OIQB01001776
[OIQB] human gut metagenome; human gut
820
746
-
Thr
TGT
[ENA]
¢þ
>WENV182475533
OIQB01001522
[OIQB] human gut metagenome; human gut
877
953
+
Arg
CCG
[ENA]
¢þ
>WENV182475536
OIQB01001741
[OIQB] human gut metagenome; human gut
915
842
-
Lys
CTT
[ENA]
¢þ
>WENV182475553
OIQB01003218
[OIQB] human gut metagenome; human gut
997
914
-
Leu
GAG
[ENA]
¢þ
>WENV182475535
OIQB01001741
[OIQB] human gut metagenome; human gut
1012
939
-
Lys
CTT
[ENA]
¢þ
>WENV182475530
OIQB01001351
[OIQB] human gut metagenome; human gut
1027
1099
+
Arg
CCG
[ENA]
¢þ
>WENV182475561
OIQB01003848
[OIQB] human gut metagenome; human gut
1029
1105
+
Pro
CGG
[ENA]
¢þ
>WENV182475518
OIQB01000905
[OIQB] human gut metagenome; human gut
1052
1127
+
Thr
TGT
[ENA]
¢þ
>WENV182475560
OIQB01003827
[OIQB] human gut metagenome; human gut
1063
1135
+
Pro
TGG
[ENA]
¢þ
>WENV182475563
OIQB01004251
[OIQB] human gut metagenome; human gut
1077
1005
-
Thr
GGT
[ENA]
¢þ
>WENV182475529
OIQB01001310
[OIQB] human gut metagenome; human gut
1097
1170
+
Trp
CCA
[ENA]
¢þ
>WENV182475549
OIQB01003042
[OIQB] human gut metagenome; human gut
1108
1034
-
Ala
GGC
[ENA]
¢þ
>WENV182475541
OIQB01002381
[OIQB] human gut metagenome; human gut
1130
1054
-
Val
TAC
[ENA]
¢þ
>WENV182475519
OIQB01000905
[OIQB] human gut metagenome; human gut
1131
1205
+
Gly
TCC
[ENA]
¢þ
>WENV182475496
OIQB01000159
[OIQB] human gut metagenome; human gut
1134
1208
+
His
GTG
[ENA]
¢þ
>WENV182475543
OIQB01002597
[OIQB] human gut metagenome; human gut
1159
1086
-
Gly
CCC
[ENA]
¢þ
>WENV182475527
OIQB01001214
[OIQB] human gut metagenome; human gut
1191
1117
-
Glu
CTC
[ENA]
¢þ
>WENV182475520
OIQB01000905
[OIQB] human gut metagenome; human gut
1212
1287
+
Thr
GGT
[ENA]
¢þ
>WENV182475538
OIQB01001788
[OIQB] human gut metagenome; human gut
1234
1319
+
Ser
TGA
[ENA]
¢þ
>WENV182475512
OIQB01000777
[OIQB] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¢þ
>WENV182475517
OIQB01000896
[OIQB] human gut metagenome; human gut
1425
1352
-
Gln
CTG
[ENA]
¢þ
>WENV182475511
OIQB01000777
[OIQB] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¢þ
>WENV182475523
OIQB01001035
[OIQB] human gut metagenome; human gut
1492
1566
+
Asp
GTC
[ENA]
¢þ
>WENV182475542
OIQB01002562
[OIQB] human gut metagenome; human gut
1534
1458
-
Arg
TCT
[ENA]
¢þ
>WENV182475539
OIQB01001891
[OIQB] human gut metagenome; human gut
1606
1522
-
Leu
CAA
[ENA]
¢þ
>WENV182475516
OIQB01000865
[OIQB] human gut metagenome; human gut
1628
1554
-
Cys
GCA
[ENA]
¢þ
>WENV182475526
OIQB01001214
[OIQB] human gut metagenome; human gut
1633
1546
-
Ser
GCT
[ENA]
¢þ
>WENV182475540
OIQB01002340
[OIQB] human gut metagenome; human gut
1715
1641
-
Thr
TGT
[ENA]
¢þ
>WENV182475522
OIQB01001008
[OIQB] human gut metagenome; human gut
1730
1655
-
Pro
TGG
[ENA]
¢þ
>WENV182475515
OIQB01000865
[OIQB] human gut metagenome; human gut
1733
1658
-
Gly
GCC
[ENA]
¢þ
>WENV182475510
OIQB01000689
[OIQB] human gut metagenome; human gut
1764
1835
+
Gln
CTG
[ENA]
¢þ
>WENV182475521
OIQB01001008
[OIQB] human gut metagenome; human gut
1841
1766
-
Pro
TGG
[ENA]
¢þ
>WENV182475514
OIQB01000865
[OIQB] human gut metagenome; human gut
1951
1876
-
Phe
GAA
[ENA]
¢þ
>WENV182475531
OIQB01001357
[OIQB] human gut metagenome; human gut
1953
2028
+
Val
GAC
[ENA]
¢þ
>WENV182475513
OIQB01000796
[OIQB] human gut metagenome; human gut
2127
2200
+
fMet
CAT
[ENA]
¢þ
>WENV182475493
OIQB01000052
[OIQB] human gut metagenome; human gut
2197
2124
-
Lys
TTT
[ENA]
¢þ
>WENV182475528
OIQB01001271
[OIQB] human gut metagenome; human gut
2230
2145
-
Tyr
GTA
[ENA]
¢þ
>WENV182475502
OIQB01000267
[OIQB] human gut metagenome; human gut
2283
2356
+
Phe
GAA
[ENA]
¢þ
>WENV182475525
OIQB01001214
[OIQB] human gut metagenome; human gut
2386
2312
-
Cys
GCA
[ENA]
¢þ
>WENV182475501
OIQB01000259
[OIQB] human gut metagenome; human gut
2805
2730
-
Ala
TGC
[ENA]
¢þ
>WENV182475509
OIQB01000670
[OIQB] human gut metagenome; human gut
2816
2887
+
Gln
TTG
[ENA]
¢þ
>WENV182475506
OIQB01000380
[OIQB] human gut metagenome; human gut
2921
2849
-
Glu
TTC
[ENA]
¢þ
>WENV182475500
OIQB01000259
[OIQB] human gut metagenome; human gut
2924
2848
-
Ile
GAT
[ENA]
¢þ
>WENV182475505
OIQB01000370
[OIQB] human gut metagenome; human gut
3165
3082
-
Tyr
GTA
[ENA]
¢þ
>WENV182475508
OIQB01000641
[OIQB] human gut metagenome; human gut
3210
3284
+
Asn
GTT
[ENA]
¢þ
>WENV182475504
OIQB01000318
[OIQB] human gut metagenome; human gut
3449
3376
-
Pro
CGG
[ENA]
¢þ
>WENV182475503
OIQB01000318
[OIQB] human gut metagenome; human gut
3534
3461
-
Phe
GAA
[ENA]
¢þ
>WENV182475499
OIQB01000258
[OIQB] human gut metagenome; human gut
3988
3913
-
Ile2
CAT
[ENA]
¢þ
>WENV182475498
OIQB01000238
[OIQB] human gut metagenome; human gut
4108
4193
+
Ser
TGA
[ENA]
¢þ
>WENV182475495
OIQB01000127
[OIQB] human gut metagenome; human gut
4244
4319
+
Pro
GGG
[ENA]
¢þ
>WENV182475497
OIQB01000177
[OIQB] human gut metagenome; human gut
4778
4704
-
Asn
GTT
[ENA]
¢þ
>WENV182475492
OIQB01000016
[OIQB] human gut metagenome; human gut
8284
8355
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK