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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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HOW TO USE
tRNA gene List
[OIQT] human gut metagenome; human gut
HIT:
161 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182479431
OIQT01000080
[OIQT] human gut metagenome; human gut
1
74
+
Pro
CGG
[ENA]
¢þ
>WENV182479406
OIQT01000003
[OIQT] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182479513
OIQT01004760
[OIQT] human gut metagenome; human gut
8
81
+
Ala
TGC
[ENA]
¢þ
>WENV182479412
OIQT01000011
[OIQT] human gut metagenome; human gut
8
83
+
Lys
TTT
[ENA]
¢þ
>WENV182479452
OIQT01000460
[OIQT] human gut metagenome; human gut
16
95
+
Leu
CAA
[ENA]
¢þ
>WENV182479508
OIQT01003799
[OIQT] human gut metagenome; human gut
46
122
+
Arg
CCT
[ENA]
¢þ
>WENV182479536
OIQT01008034
[OIQT] human gut metagenome; human gut
47
120
+
fMet
CAT
[ENA]
¢þ
>WENV182479563
OIQT01014532
[OIQT] human gut metagenome; human gut
72
159
+
Ser
TGA
[ENA]
¢þ
>WENV182479544
OIQT01008309
[OIQT] human gut metagenome; human gut
84
168
+
Leu
CAA
[ENA]
¢þ
>WENV182479418
OIQT01000033
[OIQT] human gut metagenome; human gut
93
167
+
Ala
GGC
[ENA]
¢þ
>WENV182479553
OIQT01011371
[OIQT] human gut metagenome; human gut
102
27
-
Thr
GGT
[ENA]
¢þ
>WENV182479545
OIQT01009439
[OIQT] human gut metagenome; human gut
116
191
+
Pro
TGG
[ENA]
¢þ
>WENV182479517
OIQT01005582
[OIQT] human gut metagenome; human gut
118
194
+
Arg
CCT
[ENA]
¢þ
>WENV182479448
OIQT01000350
[OIQT] human gut metagenome; human gut
124
49
-
Val
GAC
[ENA]
¢þ
>WENV182479503
OIQT01003472
[OIQT] human gut metagenome; human gut
125
49
-
Val
CAC
[ENA]
¢þ
>WENV182479493
OIQT01002659
[OIQT] human gut metagenome; human gut
125
52
-
Gly
CCC
[ENA]
¢þ
>WENV182479537
OIQT01008034
[OIQT] human gut metagenome; human gut
125
198
+
Phe
GAA
[ENA]
¢þ
>WENV182479430
OIQT01000077
[OIQT] human gut metagenome; human gut
158
84
-
Asp
GTC
[ENA]
¢þ
>WENV182479551
OIQT01011063
[OIQT] human gut metagenome; human gut
166
94
-
Cys
GCA
[ENA]
¢þ
>WENV182479564
OIQT01014532
[OIQT] human gut metagenome; human gut
183
275
+
Ser
GCT
[ENA]
¢þ
>WENV182479427
OIQT01000063
[OIQT] human gut metagenome; human gut
187
113
-
Met
CAT
[ENA]
¢þ
>WENV182479515
OIQT01005453
[OIQT] human gut metagenome; human gut
193
268
+
Ala
TGC
[ENA]
¢þ
>WENV182479471
OIQT01001195
[OIQT] human gut metagenome; human gut
195
266
+
Gln
TTG
[ENA]
¢þ
>WENV182479538
OIQT01008034
[OIQT] human gut metagenome; human gut
202
272
+
Gly
TCC
[ENA]
¢þ
>WENV182479461
OIQT01000752
[OIQT] human gut metagenome; human gut
207
132
-
Ile2
CAT
[ENA]
¢þ
>WENV182479555
OIQT01012031
[OIQT] human gut metagenome; human gut
210
137
-
Gln
TTG
[ENA]
¢þ
>WENV182479416
OIQT01000028
[OIQT] human gut metagenome; human gut
213
140
-
fMet
CAT
[ENA]
¢þ
>WENV182479476
OIQT01001364
[OIQT] human gut metagenome; human gut
214
138
-
Asn
GTT
[ENA]
¢þ
>WENV182479426
OIQT01000057
[OIQT] human gut metagenome; human gut
233
159
-
Cys
GCA
[ENA]
¢þ
>WENV182479525
OIQT01006812
[OIQT] human gut metagenome; human gut
245
318
+
Gln
TTG
[ENA]
¢þ
>WENV182479550
OIQT01011063
[OIQT] human gut metagenome; human gut
251
179
-
Glu
TTC
[ENA]
¢þ
>WENV182479510
OIQT01004115
[OIQT] human gut metagenome; human gut
256
329
+
Thr
CGT
[ENA]
¢þ
>WENV182479472
OIQT01001195
[OIQT] human gut metagenome; human gut
271
343
+
Glu
TTC
[ENA]
¢þ
>WENV182479516
OIQT01005453
[OIQT] human gut metagenome; human gut
272
348
+
Ile
GAT
[ENA]
¢þ
>WENV182479520
OIQT01006115
[OIQT] human gut metagenome; human gut
277
353
+
Arg
ACG
[ENA]
¢þ
>WENV182479531
OIQT01007385
[OIQT] human gut metagenome; human gut
286
360
+
fMet
CAT
[ENA]
¢þ
>WENV182479539
OIQT01008034
[OIQT] human gut metagenome; human gut
299
373
+
Arg
TCT
[ENA]
¢þ
>WENV182479548
OIQT01010521
[OIQT] human gut metagenome; human gut
314
388
+
Arg
CCT
[ENA]
¢þ
>WENV182479414
OIQT01000024
[OIQT] human gut metagenome; human gut
318
234
-
Leu
CAA
[ENA]
¢þ
>WENV182479560
OIQT01013656
[OIQT] human gut metagenome; human gut
322
397
+
Thr
TGT
[ENA]
¢þ
>WENV182479557
OIQT01012963
[OIQT] human gut metagenome; human gut
322
407
+
Leu
GAG
[ENA]
¢þ
>WENV182479475
OIQT01001364
[OIQT] human gut metagenome; human gut
330
256
-
Glu
CTC
[ENA]
¢þ
>WENV182479554
OIQT01012031
[OIQT] human gut metagenome; human gut
338
263
-
His
GTG
[ENA]
¢þ
>WENV182479479
OIQT01001646
[OIQT] human gut metagenome; human gut
347
262
-
Tyr
GTA
[ENA]
¢þ
>WENV182479549
OIQT01011063
[OIQT] human gut metagenome; human gut
361
289
-
Asn
GTT
[ENA]
¢þ
>WENV182479540
OIQT01008034
[OIQT] human gut metagenome; human gut
378
452
+
His
GTG
[ENA]
¢þ
>WENV182479519
OIQT01006040
[OIQT] human gut metagenome; human gut
380
451
+
Gln
CTG
[ENA]
¢þ
>WENV182479556
OIQT01012542
[OIQT] human gut metagenome; human gut
401
490
+
Ser
CGA
[ENA]
¢þ
>WENV182479559
OIQT01013609
[OIQT] human gut metagenome; human gut
410
334
-
Ile
GAT
[ENA]
¢þ
>WENV182479524
OIQT01006458
[OIQT] human gut metagenome; human gut
417
343
-
Glu
CTC
[ENA]
¢þ
>WENV182479561
OIQT01013687
[OIQT] human gut metagenome; human gut
418
336
-
Leu
TAG
[ENA]
¢þ
>WENV182479534
OIQT01007813
[OIQT] human gut metagenome; human gut
419
336
-
Leu
GAG
[ENA]
¢þ
>WENV182479512
OIQT01004756
[OIQT] human gut metagenome; human gut
419
345
-
Ala
TGC
[ENA]
¢þ
>WENV182479562
OIQT01014506
[OIQT] human gut metagenome; human gut
422
333
-
Ser
GCT
[ENA]
¢þ
>WENV182479552
OIQT01011310
[OIQT] human gut metagenome; human gut
435
509
+
Ala
GGC
[ENA]
¢þ
>WENV182479492
OIQT01002651
[OIQT] human gut metagenome; human gut
438
363
-
Trp
CCA
[ENA]
¢þ
>WENV182479530
OIQT01007168
[OIQT] human gut metagenome; human gut
444
369
-
Trp
CCA
[ENA]
¢þ
>WENV182479541
OIQT01008034
[OIQT] human gut metagenome; human gut
460
535
+
Gln
TTG
[ENA]
¢þ
>WENV182479522
OIQT01006393
[OIQT] human gut metagenome; human gut
462
388
-
Met
CAT
[ENA]
¢þ
>WENV182479543
OIQT01008271
[OIQT] human gut metagenome; human gut
481
406
-
Arg
CCT
[ENA]
¢þ
>WENV182479558
OIQT01013609
[OIQT] human gut metagenome; human gut
490
415
-
Ala
TGC
[ENA]
¢þ
>WENV182479523
OIQT01006458
[OIQT] human gut metagenome; human gut
494
419
-
Lys
CTT
[ENA]
¢þ
>WENV182479495
OIQT01002894
[OIQT] human gut metagenome; human gut
505
431
-
Ile2
CAT
[ENA]
¢þ
>WENV182479511
OIQT01004756
[OIQT] human gut metagenome; human gut
510
436
-
Ile
GAT
[ENA]
¢þ
>WENV182479486
OIQT01002215
[OIQT] human gut metagenome; human gut
510
584
+
Asn
GTT
[ENA]
¢þ
>WENV182479457
OIQT01000722
[OIQT] human gut metagenome; human gut
511
586
+
Val
TAC
[ENA]
¢þ
>WENV182479514
OIQT01005290
[OIQT] human gut metagenome; human gut
520
596
+
Trp
CCA
[ENA]
¢þ
>WENV182479529
OIQT01007168
[OIQT] human gut metagenome; human gut
526
450
-
Ile2
CAT
[ENA]
¢þ
>WENV182479547
OIQT01009975
[OIQT] human gut metagenome; human gut
537
462
-
Ile
GAT
[ENA]
¢þ
>WENV182479490
OIQT01002296
[OIQT] human gut metagenome; human gut
556
472
-
Leu
TAA
[ENA]
¢þ
>WENV182479484
OIQT01002207
[OIQT] human gut metagenome; human gut
582
493
-
Ser
GCT
[ENA]
¢þ
>WENV182479458
OIQT01000722
[OIQT] human gut metagenome; human gut
590
666
+
Asp
GTC
[ENA]
¢þ
>WENV182479532
OIQT01007385
[OIQT] human gut metagenome; human gut
592
665
+
Asn
GTT
[ENA]
¢þ
>WENV182479526
OIQT01007122
[OIQT] human gut metagenome; human gut
594
667
+
fMet
CAT
[ENA]
¢þ
>WENV182479487
OIQT01002215
[OIQT] human gut metagenome; human gut
612
686
+
Asn
GTT
[ENA]
¢þ
>WENV182479528
OIQT01007168
[OIQT] human gut metagenome; human gut
623
549
-
Glu
CTC
[ENA]
¢þ
>WENV182479542
OIQT01008034
[OIQT] human gut metagenome; human gut
623
709
+
Ser
TGA
[ENA]
¢þ
>WENV182479546
OIQT01009975
[OIQT] human gut metagenome; human gut
632
559
-
Ala
TGC
[ENA]
¢þ
>WENV182479464
OIQT01001005
[OIQT] human gut metagenome; human gut
642
569
-
Gln
TTG
[ENA]
¢þ
>WENV182479489
OIQT01002296
[OIQT] human gut metagenome; human gut
645
572
-
Gly
GCC
[ENA]
¢þ
>WENV182479535
OIQT01007845
[OIQT] human gut metagenome; human gut
652
726
+
Lys
TTT
[ENA]
¢þ
>WENV182479533
OIQT01007385
[OIQT] human gut metagenome; human gut
672
745
+
Trp
CCA
[ENA]
¢þ
>WENV182479459
OIQT01000722
[OIQT] human gut metagenome; human gut
672
747
+
Phe
GAA
[ENA]
¢þ
>WENV182479527
OIQT01007168
[OIQT] human gut metagenome; human gut
743
668
-
Lys
CTT
[ENA]
¢þ
>WENV182479498
OIQT01003037
[OIQT] human gut metagenome; human gut
747
673
-
Thr
TGT
[ENA]
¢þ
>WENV182479504
OIQT01003508
[OIQT] human gut metagenome; human gut
748
823
+
Ala
TGC
[ENA]
¢þ
>WENV182479460
OIQT01000722
[OIQT] human gut metagenome; human gut
752
827
+
Gly
GCC
[ENA]
¢þ
>WENV182479521
OIQT01006341
[OIQT] human gut metagenome; human gut
770
696
-
Cys
GCA
[ENA]
¢þ
>WENV182479497
OIQT01002934
[OIQT] human gut metagenome; human gut
806
732
-
Glu
TTC
[ENA]
¢þ
>WENV182479505
OIQT01003508
[OIQT] human gut metagenome; human gut
827
903
+
Ile
GAT
[ENA]
¢þ
>WENV182479518
OIQT01005669
[OIQT] human gut metagenome; human gut
828
752
-
Ile
GAT
[ENA]
¢þ
>WENV182479499
OIQT01003125
[OIQT] human gut metagenome; human gut
829
742
-
Ser
CGA
[ENA]
¢þ
>WENV182479494
OIQT01002760
[OIQT] human gut metagenome; human gut
835
919
+
Leu
TAG
[ENA]
¢þ
>WENV182479491
OIQT01002443
[OIQT] human gut metagenome; human gut
870
794
-
Pro
CGG
[ENA]
¢þ
>WENV182479507
OIQT01003608
[OIQT] human gut metagenome; human gut
886
961
+
Gly
CCC
[ENA]
¢þ
>WENV182479474
OIQT01001295
[OIQT] human gut metagenome; human gut
914
839
-
Ala
CGC
[ENA]
¢þ
>WENV182479496
OIQT01002934
[OIQT] human gut metagenome; human gut
923
847
-
Met
CAT
[ENA]
¢þ
>WENV182479455
OIQT01000638
[OIQT] human gut metagenome; human gut
944
853
-
Ser
GGA
[ENA]
¢þ
>WENV182479502
OIQT01003328
[OIQT] human gut metagenome; human gut
957
1032
+
Gln
CTG
[ENA]
¢þ
>WENV182479482
OIQT01001917
[OIQT] human gut metagenome; human gut
962
890
-
Arg
CCT
[ENA]
¢þ
>WENV182479478
OIQT01001481
[OIQT] human gut metagenome; human gut
968
1041
+
Gln
CTG
[ENA]
¢þ
>WENV182479488
OIQT01002227
[OIQT] human gut metagenome; human gut
972
897
-
Glu
TTC
[ENA]
¢þ
>WENV182479509
OIQT01003939
[OIQT] human gut metagenome; human gut
1046
1122
+
Arg
CCG
[ENA]
¢þ
>WENV182479477
OIQT01001460
[OIQT] human gut metagenome; human gut
1064
1138
+
Ile2
CAT
[ENA]
¢þ
>WENV182479506
OIQT01003514
[OIQT] human gut metagenome; human gut
1115
1188
+
Asn
GTT
[ENA]
¢þ
>WENV182479500
OIQT01003312
[OIQT] human gut metagenome; human gut
1147
1222
+
Arg
TCT
[ENA]
¢þ
>WENV182479481
OIQT01001884
[OIQT] human gut metagenome; human gut
1175
1258
+
Leu
TAG
[ENA]
¢þ
>WENV182479462
OIQT01000768
[OIQT] human gut metagenome; human gut
1205
1122
-
Leu
TAG
[ENA]
¢þ
>WENV182479501
OIQT01003312
[OIQT] human gut metagenome; human gut
1230
1306
+
His
GTG
[ENA]
¢þ
>WENV182479473
OIQT01001260
[OIQT] human gut metagenome; human gut
1255
1182
-
Ile2
CAT
[ENA]
¢þ
>WENV182479463
OIQT01000780
[OIQT] human gut metagenome; human gut
1288
1213
-
Thr
GGT
[ENA]
¢þ
>WENV182479415
OIQT01000025
[OIQT] human gut metagenome; human gut
1312
1237
-
Gly
CCC
[ENA]
¢þ
>WENV182479454
OIQT01000634
[OIQT] human gut metagenome; human gut
1358
1282
-
fMet
CAT
[ENA]
¢þ
>WENV182479485
OIQT01002208
[OIQT] human gut metagenome; human gut
1399
1482
+
Leu
GAG
[ENA]
¢þ
>WENV182479483
OIQT01001991
[OIQT] human gut metagenome; human gut
1552
1625
+
Arg
CCT
[ENA]
¢þ
>WENV182479466
OIQT01001051
[OIQT] human gut metagenome; human gut
1559
1634
+
Phe
GAA
[ENA]
¢þ
>WENV182479453
OIQT01000633
[OIQT] human gut metagenome; human gut
1580
1504
-
Asn
GTT
[ENA]
¢þ
>WENV182479467
OIQT01001051
[OIQT] human gut metagenome; human gut
1638
1713
+
Gly
GCC
[ENA]
¢þ
>WENV182479468
OIQT01001051
[OIQT] human gut metagenome; human gut
1721
1796
+
Val
TAC
[ENA]
¢þ
>WENV182479469
OIQT01001051
[OIQT] human gut metagenome; human gut
1800
1876
+
Asp
GTC
[ENA]
¢þ
>WENV182479480
OIQT01001830
[OIQT] human gut metagenome; human gut
1823
1750
-
Gly
GCC
[ENA]
¢þ
>WENV182479470
OIQT01001051
[OIQT] human gut metagenome; human gut
1880
1955
+
Thr
GGT
[ENA]
¢þ
>WENV182479446
OIQT01000274
[OIQT] human gut metagenome; human gut
1941
2028
+
Ser
TGA
[ENA]
¢þ
>WENV182479447
OIQT01000274
[OIQT] human gut metagenome; human gut
2061
2154
+
Ser
GCT
[ENA]
¢þ
>WENV182479451
OIQT01000418
[OIQT] human gut metagenome; human gut
2291
2216
-
Ala
CGC
[ENA]
¢þ
>WENV182479465
OIQT01001034
[OIQT] human gut metagenome; human gut
2315
2388
+
Gly
TCC
[ENA]
¢þ
>WENV182479437
OIQT01000100
[OIQT] human gut metagenome; human gut
2440
2512
+
Arg
CCT
[ENA]
¢þ
>WENV182479436
OIQT01000091
[OIQT] human gut metagenome; human gut
2689
2616
-
Trp
CCA
[ENA]
¢þ
>WENV182479450
OIQT01000391
[OIQT] human gut metagenome; human gut
2745
2817
+
Pro
TGG
[ENA]
¢þ
>WENV182479456
OIQT01000657
[OIQT] human gut metagenome; human gut
3008
3082
+
Arg
TCT
[ENA]
¢þ
>WENV182479438
OIQT01000118
[OIQT] human gut metagenome; human gut
3040
2966
-
Thr
TGT
[ENA]
¢þ
>WENV182479435
OIQT01000091
[OIQT] human gut metagenome; human gut
4054
3982
-
Thr
GGT
[ENA]
¢þ
>WENV182479434
OIQT01000091
[OIQT] human gut metagenome; human gut
4256
4173
-
Tyr
GTA
[ENA]
¢þ
>WENV182479433
OIQT01000091
[OIQT] human gut metagenome; human gut
4373
4299
-
Thr
TGT
[ENA]
¢þ
>WENV182479449
OIQT01000356
[OIQT] human gut metagenome; human gut
4804
4890
+
Leu
CAG
[ENA]
¢þ
>WENV182479444
OIQT01000265
[OIQT] human gut metagenome; human gut
4959
5032
+
Gln
CTG
[ENA]
¢þ
>WENV182479441
OIQT01000157
[OIQT] human gut metagenome; human gut
5046
5129
+
Tyr
GTA
[ENA]
¢þ
>WENV182479445
OIQT01000265
[OIQT] human gut metagenome; human gut
5062
5135
+
Pro
CGG
[ENA]
¢þ
>WENV182479443
OIQT01000223
[OIQT] human gut metagenome; human gut
6184
6260
+
Arg
ACG
[ENA]
¢þ
>WENV182479425
OIQT01000052
[OIQT] human gut metagenome; human gut
6363
6278
-
Ser
TGA
[ENA]
¢þ
>WENV182479442
OIQT01000177
[OIQT] human gut metagenome; human gut
9005
8929
-
Val
TAC
[ENA]
¢þ
>WENV182479440
OIQT01000150
[OIQT] human gut metagenome; human gut
9817
9744
-
Thr
CGT
[ENA]
¢þ
>WENV182479429
OIQT01000075
[OIQT] human gut metagenome; human gut
10408
10333
-
His
GTG
[ENA]
¢þ
>WENV182479428
OIQT01000066
[OIQT] human gut metagenome; human gut
10959
11034
+
Pro
TGG
[ENA]
¢þ
>WENV182479411
OIQT01000010
[OIQT] human gut metagenome; human gut
11211
11284
+
Trp
CCA
[ENA]
¢þ
>WENV182479439
OIQT01000127
[OIQT] human gut metagenome; human gut
11430
11356
-
Asp
GTC
[ENA]
¢þ
>WENV182479410
OIQT01000009
[OIQT] human gut metagenome; human gut
15534
15606
+
Arg
CCG
[ENA]
¢þ
>WENV182479432
OIQT01000085
[OIQT] human gut metagenome; human gut
17546
17620
+
Thr
TGT
[ENA]
¢þ
>WENV182479413
OIQT01000013
[OIQT] human gut metagenome; human gut
18413
18331
-
Leu
TAG
[ENA]
¢þ
>WENV182479420
OIQT01000039
[OIQT] human gut metagenome; human gut
20652
20740
+
Ser
GGA
[ENA]
¢þ
>WENV182479421
OIQT01000044
[OIQT] human gut metagenome; human gut
27058
26985
-
Phe
GAA
[ENA]
¢þ
>WENV182479409
OIQT01000007
[OIQT] human gut metagenome; human gut
28249
28161
-
Ser
GGA
[ENA]
¢þ
>WENV182479417
OIQT01000032
[OIQT] human gut metagenome; human gut
30502
30431
-
Gln
TTG
[ENA]
¢þ
>WENV182479424
OIQT01000052
[OIQT] human gut metagenome; human gut
31268
31342
+
Glu
TTC
[ENA]
¢þ
>WENV182479423
OIQT01000046
[OIQT] human gut metagenome; human gut
34840
34766
-
Glu
CTC
[ENA]
¢þ
>WENV182479422
OIQT01000046
[OIQT] human gut metagenome; human gut
35281
35194
-
Ser
GCT
[ENA]
¢þ
>WENV182479419
OIQT01000033
[OIQT] human gut metagenome; human gut
43477
43404
-
Lys
CTT
[ENA]
¢þ
>WENV182479408
OIQT01000007
[OIQT] human gut metagenome; human gut
51509
51438
-
Gln
CTG
[ENA]
¢þ
>WENV182479404
OIQT01000001
[OIQT] human gut metagenome; human gut
52082
52010
-
Arg
CCT
[ENA]
¢þ
>WENV182479407
OIQT01000004
[OIQT] human gut metagenome; human gut
83488
83414
-
Ile2
CAT
[ENA]
¢þ
>WENV182479405
OIQT01000002
[OIQT] human gut metagenome; human gut
120434
120359
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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