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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OISO] human gut metagenome; human gut
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182491951
OISO01002860
[OISO] human gut metagenome; human gut
15
89
+
Glu
TTC
[ENA]
¢þ
>WENV182491925
OISO01000391
[OISO] human gut metagenome; human gut
32
104
+
Glu
TTC
[ENA]
¢þ
>WENV182491940
OISO01001010
[OISO] human gut metagenome; human gut
45
120
+
Lys
CTT
[ENA]
¢þ
>WENV182491947
OISO01002189
[OISO] human gut metagenome; human gut
84
8
-
Asp
GTC
[ENA]
¢þ
>WENV182491952
OISO01002860
[OISO] human gut metagenome; human gut
93
166
+
Gly
TCC
[ENA]
¢þ
>WENV182491930
OISO01000684
[OISO] human gut metagenome; human gut
130
204
+
Phe
GAA
[ENA]
¢þ
>WENV182491953
OISO01002860
[OISO] human gut metagenome; human gut
171
246
+
His
GTG
[ENA]
¢þ
>WENV182491938
OISO01000876
[OISO] human gut metagenome; human gut
175
250
+
Ala
TGC
[ENA]
¢þ
>WENV182491946
OISO01002189
[OISO] human gut metagenome; human gut
183
93
-
Ser
GCT
[ENA]
¢þ
>WENV182491924
OISO01000362
[OISO] human gut metagenome; human gut
186
112
-
Glu
TTC
[ENA]
¢þ
>WENV182491919
OISO01000075
[OISO] human gut metagenome; human gut
217
290
+
Phe
GAA
[ENA]
¢þ
>WENV182491957
OISO01003014
[OISO] human gut metagenome; human gut
223
295
+
Glu
CTC
[ENA]
¢þ
>WENV182491949
OISO01002432
[OISO] human gut metagenome; human gut
226
151
-
Trp
CCA
[ENA]
¢þ
>WENV182491931
OISO01000684
[OISO] human gut metagenome; human gut
230
300
+
Gly
TCC
[ENA]
¢þ
>WENV182491922
OISO01000138
[OISO] human gut metagenome; human gut
246
332
+
Leu
CAG
[ENA]
¢þ
>WENV182491954
OISO01002860
[OISO] human gut metagenome; human gut
249
322
+
Gln
TTG
[ENA]
¢þ
>WENV182491939
OISO01000876
[OISO] human gut metagenome; human gut
254
330
+
Ile
GAT
[ENA]
¢þ
>WENV182491956
OISO01002969
[OISO] human gut metagenome; human gut
255
162
-
Ser
GCT
[ENA]
¢þ
>WENV182491926
OISO01000391
[OISO] human gut metagenome; human gut
259
331
+
Thr
TGT
[ENA]
¢þ
>WENV182491945
OISO01002018
[OISO] human gut metagenome; human gut
269
341
+
Asn
GTT
[ENA]
¢þ
>WENV182491934
OISO01000736
[OISO] human gut metagenome; human gut
283
356
+
Trp
CCA
[ENA]
¢þ
>WENV182491928
OISO01000512
[OISO] human gut metagenome; human gut
286
372
+
Ser
TGA
[ENA]
¢þ
>WENV182491950
OISO01002563
[OISO] human gut metagenome; human gut
304
232
-
Pro
TGG
[ENA]
¢þ
>WENV182491937
OISO01000864
[OISO] human gut metagenome; human gut
311
236
-
Ala
GGC
[ENA]
¢þ
>WENV182491933
OISO01000691
[OISO] human gut metagenome; human gut
316
392
+
Val
CAC
[ENA]
¢þ
>WENV182491932
OISO01000684
[OISO] human gut metagenome; human gut
332
406
+
Arg
TCT
[ENA]
¢þ
>WENV182491948
OISO01002422
[OISO] human gut metagenome; human gut
337
263
-
Thr
TGT
[ENA]
¢þ
>WENV182491923
OISO01000362
[OISO] human gut metagenome; human gut
354
278
-
Met
CAT
[ENA]
¢þ
>WENV182491959
OISO01003219
[OISO] human gut metagenome; human gut
362
437
+
Ile2
CAT
[ENA]
¢þ
>WENV182491942
OISO01001553
[OISO] human gut metagenome; human gut
380
293
-
Ser
GCT
[ENA]
¢þ
>WENV182491955
OISO01002969
[OISO] human gut metagenome; human gut
388
298
-
Ser
TGA
[ENA]
¢þ
>WENV182491958
OISO01003124
[OISO] human gut metagenome; human gut
389
464
+
Val
GAC
[ENA]
¢þ
>WENV182491936
OISO01000858
[OISO] human gut metagenome; human gut
400
483
+
Tyr
GTA
[ENA]
¢þ
>WENV182491929
OISO01000582
[OISO] human gut metagenome; human gut
459
383
-
Arg
ACG
[ENA]
¢þ
>WENV182491935
OISO01000744
[OISO] human gut metagenome; human gut
470
543
+
fMet
CAT
[ENA]
¢þ
>WENV182491944
OISO01002012
[OISO] human gut metagenome; human gut
475
401
-
Glu
CTC
[ENA]
¢þ
>WENV182491943
OISO01001675
[OISO] human gut metagenome; human gut
482
556
+
Lys
CTT
[ENA]
¢þ
>WENV182491941
OISO01001321
[OISO] human gut metagenome; human gut
499
425
-
Glu
TTC
[ENA]
¢þ
>WENV182491927
OISO01000444
[OISO] human gut metagenome; human gut
855
780
-
Lys
CTT
[ENA]
¢þ
>WENV182491920
OISO01000125
[OISO] human gut metagenome; human gut
1352
1425
+
Ala
TGC
[ENA]
¢þ
>WENV182491921
OISO01000125
[OISO] human gut metagenome; human gut
1448
1522
+
Ile
GAT
[ENA]
¢þ
>WENV182491912
OISO01000017
[OISO] human gut metagenome; human gut
3435
3510
+
Asp
GTC
[ENA]
¢þ
>WENV182491911
OISO01000005
[OISO] human gut metagenome; human gut
3502
3428
-
Ala
TGC
[ENA]
¢þ
>WENV182491913
OISO01000017
[OISO] human gut metagenome; human gut
3541
3616
+
Val
TAC
[ENA]
¢þ
>WENV182491910
OISO01000005
[OISO] human gut metagenome; human gut
3594
3520
-
Ile
GAT
[ENA]
¢þ
>WENV182491914
OISO01000017
[OISO] human gut metagenome; human gut
3622
3698
+
Asp
GTC
[ENA]
¢þ
>WENV182491915
OISO01000017
[OISO] human gut metagenome; human gut
3705
3780
+
Phe
GAA
[ENA]
¢þ
>WENV182491916
OISO01000017
[OISO] human gut metagenome; human gut
3810
3885
+
Gly
GCC
[ENA]
¢þ
>WENV182491917
OISO01000017
[OISO] human gut metagenome; human gut
3916
3992
+
Asp
GTC
[ENA]
¢þ
>WENV182491918
OISO01000017
[OISO] human gut metagenome; human gut
3996
4071
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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