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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OISP] human gut metagenome; human gut
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182492030
OISP01006150
[OISP] human gut metagenome; human gut
67
140
+
Pro
CGG
[ENA]
¢þ
>WENV182491994
OISP01002088
[OISP] human gut metagenome; human gut
76
147
+
Gln
CTG
[ENA]
¢þ
>WENV182492008
OISP01003627
[OISP] human gut metagenome; human gut
111
35
-
Arg
CCG
[ENA]
¢þ
>WENV182492022
OISP01004378
[OISP] human gut metagenome; human gut
130
205
+
Phe
GAA
[ENA]
¢þ
>WENV182492019
OISP01004106
[OISP] human gut metagenome; human gut
138
63
-
Arg
TCT
[ENA]
¢þ
>WENV182492031
OISP01006257
[OISP] human gut metagenome; human gut
140
66
-
Arg
CCT
[ENA]
¢þ
>WENV182492048
OISP01008832
[OISP] human gut metagenome; human gut
148
75
-
Thr
TGT
[ENA]
¢þ
>WENV182492053
OISP01010253
[OISP] human gut metagenome; human gut
161
235
+
Glu
CTC
[ENA]
¢þ
>WENV182491990
OISP01001546
[OISP] human gut metagenome; human gut
193
110
-
Leu
CAA
[ENA]
¢þ
>WENV182492032
OISP01006617
[OISP] human gut metagenome; human gut
202
277
+
Gly
CCC
[ENA]
¢þ
>WENV182492021
OISP01004211
[OISP] human gut metagenome; human gut
227
300
+
Pro
CGG
[ENA]
¢þ
>WENV182492054
OISP01010285
[OISP] human gut metagenome; human gut
230
305
+
Asn
GTT
[ENA]
¢þ
>WENV182492041
OISP01007862
[OISP] human gut metagenome; human gut
232
319
+
Ser
TGA
[ENA]
¢þ
>WENV182492047
OISP01008832
[OISP] human gut metagenome; human gut
233
161
-
Glu
TTC
[ENA]
¢þ
>WENV182492004
OISP01003166
[OISP] human gut metagenome; human gut
233
161
-
Arg
CCT
[ENA]
¢þ
>WENV182492026
OISP01005515
[OISP] human gut metagenome; human gut
261
189
-
Pro
TGG
[ENA]
¢þ
>WENV182492029
OISP01005909
[OISP] human gut metagenome; human gut
280
194
-
Leu
GAG
[ENA]
¢þ
>WENV182492007
OISP01003318
[OISP] human gut metagenome; human gut
305
232
-
fMet
CAT
[ENA]
¢þ
>WENV182492052
OISP01010123
[OISP] human gut metagenome; human gut
310
226
-
Leu
CAA
[ENA]
¢þ
>WENV182492012
OISP01003811
[OISP] human gut metagenome; human gut
314
401
+
Ser
GGA
[ENA]
¢þ
>WENV182492046
OISP01008832
[OISP] human gut metagenome; human gut
316
244
-
Asn
GTT
[ENA]
¢þ
>WENV182491984
OISP01001033
[OISP] human gut metagenome; human gut
332
261
-
Gln
TTG
[ENA]
¢þ
>WENV182492023
OISP01004378
[OISP] human gut metagenome; human gut
348
423
+
Gly
GCC
[ENA]
¢þ
>WENV182492042
OISP01007862
[OISP] human gut metagenome; human gut
352
445
+
Ser
GCT
[ENA]
¢þ
>WENV182492033
OISP01007084
[OISP] human gut metagenome; human gut
377
295
-
Leu
TAG
[ENA]
¢þ
>WENV182492043
OISP01008190
[OISP] human gut metagenome; human gut
406
479
+
Gln
CTG
[ENA]
¢þ
>WENV182491991
OISP01001626
[OISP] human gut metagenome; human gut
411
482
+
Gln
TTG
[ENA]
¢þ
>WENV182491993
OISP01001851
[OISP] human gut metagenome; human gut
425
343
-
Leu
CAA
[ENA]
¢þ
>WENV182491971
OISP01000483
[OISP] human gut metagenome; human gut
435
510
+
Ala
GGC
[ENA]
¢þ
>WENV182492036
OISP01007292
[OISP] human gut metagenome; human gut
457
532
+
Val
GAC
[ENA]
¢þ
>WENV182492027
OISP01005681
[OISP] human gut metagenome; human gut
467
539
+
Arg
CCG
[ENA]
¢þ
>WENV182491985
OISP01001048
[OISP] human gut metagenome; human gut
468
542
+
Glu
CTC
[ENA]
¢þ
>WENV182492044
OISP01008560
[OISP] human gut metagenome; human gut
470
543
+
Asn
GTT
[ENA]
¢þ
>WENV182492049
OISP01009220
[OISP] human gut metagenome; human gut
505
430
-
Ala
TGC
[ENA]
¢þ
>WENV182492040
OISP01007596
[OISP] human gut metagenome; human gut
535
459
-
Pro
GGG
[ENA]
¢þ
>WENV182492037
OISP01007292
[OISP] human gut metagenome; human gut
539
615
+
Asp
GTC
[ENA]
¢þ
>WENV182492051
OISP01009710
[OISP] human gut metagenome; human gut
551
477
-
Glu
CTC
[ENA]
¢þ
>WENV182492050
OISP01009520
[OISP] human gut metagenome; human gut
552
476
-
Val
GAC
[ENA]
¢þ
>WENV182492035
OISP01007179
[OISP] human gut metagenome; human gut
553
478
-
Trp
CCA
[ENA]
¢þ
>WENV182492025
OISP01005080
[OISP] human gut metagenome; human gut
559
650
+
Ser
CGA
[ENA]
¢þ
>WENV182492010
OISP01003630
[OISP] human gut metagenome; human gut
568
495
-
Lys
CTT
[ENA]
¢þ
>WENV182491980
OISP01000805
[OISP] human gut metagenome; human gut
581
653
+
Arg
CCT
[ENA]
¢þ
>WENV182491986
OISP01001048
[OISP] human gut metagenome; human gut
582
658
+
Asn
GTT
[ENA]
¢þ
>WENV182492024
OISP01005073
[OISP] human gut metagenome; human gut
583
509
-
Thr
TGT
[ENA]
¢þ
>WENV182492045
OISP01008577
[OISP] human gut metagenome; human gut
589
514
-
Ala
TGC
[ENA]
¢þ
>WENV182492039
OISP01007562
[OISP] human gut metagenome; human gut
592
519
-
Thr
CGT
[ENA]
¢þ
>WENV182492013
OISP01003857
[OISP] human gut metagenome; human gut
603
678
+
Thr
TGT
[ENA]
¢þ
>WENV182492028
OISP01005738
[OISP] human gut metagenome; human gut
611
685
+
Arg
TCT
[ENA]
¢þ
>WENV182492038
OISP01007292
[OISP] human gut metagenome; human gut
619
694
+
Thr
GGT
[ENA]
¢þ
>WENV182492003
OISP01002919
[OISP] human gut metagenome; human gut
620
536
-
Leu
TAA
[ENA]
¢þ
>WENV182492034
OISP01007179
[OISP] human gut metagenome; human gut
638
562
-
Asp
GTC
[ENA]
¢þ
>WENV182491999
OISP01002676
[OISP] human gut metagenome; human gut
639
566
-
Phe
GAA
[ENA]
¢þ
>WENV182492009
OISP01003630
[OISP] human gut metagenome; human gut
665
592
-
Lys
CTT
[ENA]
¢þ
>WENV182492011
OISP01003660
[OISP] human gut metagenome; human gut
668
592
-
Trp
CCA
[ENA]
¢þ
>WENV182492005
OISP01003201
[OISP] human gut metagenome; human gut
672
759
+
Ser
GCT
[ENA]
¢þ
>WENV182492014
OISP01003857
[OISP] human gut metagenome; human gut
687
771
+
Tyr
GTA
[ENA]
¢þ
>WENV182492002
OISP01002919
[OISP] human gut metagenome; human gut
707
634
-
Gly
GCC
[ENA]
¢þ
>WENV182491977
OISP01000680
[OISP] human gut metagenome; human gut
736
824
+
Ser
GGA
[ENA]
¢þ
>WENV182492020
OISP01004123
[OISP] human gut metagenome; human gut
789
874
+
Tyr
GTA
[ENA]
¢þ
>WENV182492018
OISP01003980
[OISP] human gut metagenome; human gut
793
717
-
Arg
CCG
[ENA]
¢þ
>WENV182492006
OISP01003201
[OISP] human gut metagenome; human gut
837
909
+
Glu
CTC
[ENA]
¢þ
>WENV182491981
OISP01000828
[OISP] human gut metagenome; human gut
878
952
+
Gly
TCC
[ENA]
¢þ
>WENV182492015
OISP01003857
[OISP] human gut metagenome; human gut
888
962
+
Gly
TCC
[ENA]
¢þ
>WENV182491992
OISP01001739
[OISP] human gut metagenome; human gut
942
868
-
Thr
TGT
[ENA]
¢þ
>WENV182492001
OISP01002784
[OISP] human gut metagenome; human gut
944
872
-
Cys
GCA
[ENA]
¢þ
>WENV182492016
OISP01003857
[OISP] human gut metagenome; human gut
969
1044
+
Thr
GGT
[ENA]
¢þ
>WENV182492017
OISP01003907
[OISP] human gut metagenome; human gut
1066
1138
+
Glu
TTC
[ENA]
¢þ
>WENV182492000
OISP01002682
[OISP] human gut metagenome; human gut
1099
1182
+
Leu
GAG
[ENA]
¢þ
>WENV182491979
OISP01000741
[OISP] human gut metagenome; human gut
1113
1187
+
Ala
GGC
[ENA]
¢þ
>WENV182491964
OISP01000146
[OISP] human gut metagenome; human gut
1116
1192
+
Val
CAC
[ENA]
¢þ
>WENV182491995
OISP01002254
[OISP] human gut metagenome; human gut
1118
1193
+
Gly
GCC
[ENA]
¢þ
>WENV182491987
OISP01001092
[OISP] human gut metagenome; human gut
1153
1241
+
Ser
GGA
[ENA]
¢þ
>WENV182491968
OISP01000244
[OISP] human gut metagenome; human gut
1161
1244
+
Tyr
GTA
[ENA]
¢þ
>WENV182491962
OISP01000096
[OISP] human gut metagenome; human gut
1235
1319
+
Leu
CAA
[ENA]
¢þ
>WENV182491996
OISP01002254
[OISP] human gut metagenome; human gut
1247
1320
+
Cys
GCA
[ENA]
¢þ
>WENV182491974
OISP01000524
[OISP] human gut metagenome; human gut
1281
1206
-
Glu
TTC
[ENA]
¢þ
>WENV182491997
OISP01002254
[OISP] human gut metagenome; human gut
1333
1419
+
Leu
TAA
[ENA]
¢þ
>WENV182491969
OISP01000244
[OISP] human gut metagenome; human gut
1337
1409
+
Thr
GGT
[ENA]
¢þ
>WENV182491973
OISP01000497
[OISP] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¢þ
>WENV182491976
OISP01000546
[OISP] human gut metagenome; human gut
1358
1443
+
Ser
TGA
[ENA]
¢þ
>WENV182491989
OISP01001519
[OISP] human gut metagenome; human gut
1429
1343
-
Leu
CAG
[ENA]
¢þ
>WENV182491998
OISP01002387
[OISP] human gut metagenome; human gut
1434
1359
-
His
GTG
[ENA]
¢þ
>WENV182491972
OISP01000497
[OISP] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¢þ
>WENV182491978
OISP01000693
[OISP] human gut metagenome; human gut
1445
1516
+
Gln
CTG
[ENA]
¢þ
>WENV182491988
OISP01001198
[OISP] human gut metagenome; human gut
1609
1683
+
Asp
GTC
[ENA]
¢þ
>WENV182491966
OISP01000179
[OISP] human gut metagenome; human gut
1661
1587
-
Asn
GTT
[ENA]
¢þ
>WENV182491975
OISP01000531
[OISP] human gut metagenome; human gut
2028
1957
-
Gln
TTG
[ENA]
¢þ
>WENV182491983
OISP01001011
[OISP] human gut metagenome; human gut
2171
2244
+
Thr
CGT
[ENA]
¢þ
>WENV182491982
OISP01000835
[OISP] human gut metagenome; human gut
2236
2311
+
Thr
GGT
[ENA]
¢þ
>WENV182491970
OISP01000244
[OISP] human gut metagenome; human gut
2702
2775
+
Trp
CCA
[ENA]
¢þ
>WENV182491967
OISP01000232
[OISP] human gut metagenome; human gut
3508
3582
+
Met
CAT
[ENA]
¢þ
>WENV182491961
OISP01000064
[OISP] human gut metagenome; human gut
3599
3526
-
Lys
TTT
[ENA]
¢þ
>WENV182491965
OISP01000166
[OISP] human gut metagenome; human gut
3627
3701
+
Ile2
CAT
[ENA]
¢þ
>WENV182491963
OISP01000107
[OISP] human gut metagenome; human gut
3908
3983
+
Pro
GGG
[ENA]
¢þ
>WENV182491960
OISP01000062
[OISP] human gut metagenome; human gut
4576
4501
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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