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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIUB] human gut metagenome; human gut
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182501269
OIUB01004819
[OIUB] human gut metagenome; human gut
2
77
+
Ile2
CAT
[ENA]
¢þ
>WENV182501262
OIUB01003835
[OIUB] human gut metagenome; human gut
16
90
+
Asn
GTT
[ENA]
¢þ
>WENV182501250
OIUB01003068
[OIUB] human gut metagenome; human gut
45
120
+
Gly
TCC
[ENA]
¢þ
>WENV182501277
OIUB01006054
[OIUB] human gut metagenome; human gut
46
121
+
Thr
TGT
[ENA]
¢þ
>WENV182501274
OIUB01005786
[OIUB] human gut metagenome; human gut
66
155
+
Ser
GCT
[ENA]
¢þ
>WENV182501211
OIUB01000528
[OIUB] human gut metagenome; human gut
79
3
-
Arg
TCT
[ENA]
¢þ
>WENV182501281
OIUB01006307
[OIUB] human gut metagenome; human gut
82
6
-
Arg
TCT
[ENA]
¢þ
>WENV182501270
OIUB01004819
[OIUB] human gut metagenome; human gut
85
161
+
Arg
TCG
[ENA]
¢þ
>WENV182501268
OIUB01004009
[OIUB] human gut metagenome; human gut
87
160
+
Ala
TGC
[ENA]
¢þ
>WENV182501263
OIUB01003835
[OIUB] human gut metagenome; human gut
94
181
+
Cys
GCA
[ENA]
¢þ
>WENV182501278
OIUB01006054
[OIUB] human gut metagenome; human gut
124
198
+
Met
CAT
[ENA]
¢þ
>WENV182501242
OIUB01002602
[OIUB] human gut metagenome; human gut
131
215
+
Leu
CAA
[ENA]
¢þ
>WENV182501246
OIUB01002761
[OIUB] human gut metagenome; human gut
133
58
-
Val
TAC
[ENA]
¢þ
>WENV182501241
OIUB01002492
[OIUB] human gut metagenome; human gut
156
82
-
Asn
GTT
[ENA]
¢þ
>WENV182501248
OIUB01002823
[OIUB] human gut metagenome; human gut
169
243
+
Arg
TCT
[ENA]
¢þ
>WENV182501271
OIUB01004819
[OIUB] human gut metagenome; human gut
175
251
+
Arg
TCT
[ENA]
¢þ
>WENV182501264
OIUB01003835
[OIUB] human gut metagenome; human gut
194
270
+
Asp
GTC
[ENA]
¢þ
>WENV182501209
OIUB01000312
[OIUB] human gut metagenome; human gut
209
138
-
Gln
TTG
[ENA]
¢þ
>WENV182501254
OIUB01003319
[OIUB] human gut metagenome; human gut
210
283
+
Arg
CCG
[ENA]
¢þ
>WENV182501260
OIUB01003611
[OIUB] human gut metagenome; human gut
212
136
-
Arg
TCT
[ENA]
¢þ
>WENV182501245
OIUB01002761
[OIUB] human gut metagenome; human gut
244
169
-
Lys
TTT
[ENA]
¢þ
>WENV182501280
OIUB01006195
[OIUB] human gut metagenome; human gut
256
345
+
Ser
CGA
[ENA]
¢þ
>WENV182501189
OIUB01000050
[OIUB] human gut metagenome; human gut
271
345
+
Ile2
CAT
[ENA]
¢þ
>WENV182501279
OIUB01006054
[OIUB] human gut metagenome; human gut
279
353
+
Arg
CCT
[ENA]
¢þ
>WENV182501249
OIUB01003039
[OIUB] human gut metagenome; human gut
281
205
-
Pro
CGG
[ENA]
¢þ
>WENV182501256
OIUB01003378
[OIUB] human gut metagenome; human gut
282
366
+
Leu
CAA
[ENA]
¢þ
>WENV182501273
OIUB01005148
[OIUB] human gut metagenome; human gut
294
218
-
Asn
GTT
[ENA]
¢þ
>WENV182501220
OIUB01000864
[OIUB] human gut metagenome; human gut
300
227
-
fMet
CAT
[ENA]
¢þ
>WENV182501251
OIUB01003068
[OIUB] human gut metagenome; human gut
356
430
+
Gln
TTG
[ENA]
¢þ
>WENV182501199
OIUB01000135
[OIUB] human gut metagenome; human gut
360
433
+
Gly
CCC
[ENA]
¢þ
>WENV182501226
OIUB01001154
[OIUB] human gut metagenome; human gut
362
445
+
Tyr
GTA
[ENA]
¢þ
>WENV182501255
OIUB01003319
[OIUB] human gut metagenome; human gut
376
452
+
fMet
CAT
[ENA]
¢þ
>WENV182501272
OIUB01005148
[OIUB] human gut metagenome; human gut
392
301
-
Ser
GCT
[ENA]
¢þ
>WENV182501259
OIUB01003611
[OIUB] human gut metagenome; human gut
398
312
-
Leu
TAA
[ENA]
¢þ
>WENV182501239
OIUB01002458
[OIUB] human gut metagenome; human gut
398
474
+
Pro
GGG
[ENA]
¢þ
>WENV182501276
OIUB01005842
[OIUB] human gut metagenome; human gut
422
339
-
Tyr
GTA
[ENA]
¢þ
>WENV182501265
OIUB01003835
[OIUB] human gut metagenome; human gut
456
531
+
Asp
GTC
[ENA]
¢þ
>WENV182501235
OIUB01001940
[OIUB] human gut metagenome; human gut
503
415
-
Ser
GGA
[ENA]
¢þ
>WENV182501275
OIUB01005842
[OIUB] human gut metagenome; human gut
511
428
-
Tyr
GTA
[ENA]
¢þ
>WENV182501210
OIUB01000397
[OIUB] human gut metagenome; human gut
517
441
-
Met
CAT
[ENA]
¢þ
>WENV182501266
OIUB01003835
[OIUB] human gut metagenome; human gut
532
606
+
Gln
CTG
[ENA]
¢þ
>WENV182501227
OIUB01001154
[OIUB] human gut metagenome; human gut
536
608
+
Thr
GGT
[ENA]
¢þ
>WENV182501244
OIUB01002756
[OIUB] human gut metagenome; human gut
541
616
+
Gly
GCC
[ENA]
¢þ
>WENV182501258
OIUB01003611
[OIUB] human gut metagenome; human gut
542
467
-
Ile2
CAT
[ENA]
¢þ
>WENV182501236
OIUB01002193
[OIUB] human gut metagenome; human gut
560
474
-
Leu
GAG
[ENA]
¢þ
>WENV182501195
OIUB01000102
[OIUB] human gut metagenome; human gut
574
501
-
Pro
CGG
[ENA]
¢þ
>WENV182501252
OIUB01003068
[OIUB] human gut metagenome; human gut
576
651
+
Thr
TGT
[ENA]
¢þ
>WENV182501240
OIUB01002464
[OIUB] human gut metagenome; human gut
594
669
+
Phe
GAA
[ENA]
¢þ
>WENV182501219
OIUB01000822
[OIUB] human gut metagenome; human gut
598
671
+
Lys
TTT
[ENA]
¢þ
>WENV182501267
OIUB01003835
[OIUB] human gut metagenome; human gut
614
689
+
His
GTG
[ENA]
¢þ
>WENV182501238
OIUB01002382
[OIUB] human gut metagenome; human gut
616
690
+
Arg
CCT
[ENA]
¢þ
>WENV182501214
OIUB01000653
[OIUB] human gut metagenome; human gut
624
698
+
Asp
GTC
[ENA]
¢þ
>WENV182501194
OIUB01000102
[OIUB] human gut metagenome; human gut
659
586
-
Phe
GAA
[ENA]
¢þ
>WENV182501253
OIUB01003187
[OIUB] human gut metagenome; human gut
712
794
+
Leu
TAG
[ENA]
¢þ
>WENV182501261
OIUB01003656
[OIUB] human gut metagenome; human gut
728
801
+
Glu
TTC
[ENA]
¢þ
>WENV182501237
OIUB01002300
[OIUB] human gut metagenome; human gut
785
712
-
Thr
CGT
[ENA]
¢þ
>WENV182501257
OIUB01003611
[OIUB] human gut metagenome; human gut
819
744
-
Ile
GAT
[ENA]
¢þ
>WENV182501230
OIUB01001221
[OIUB] human gut metagenome; human gut
834
758
-
Val
GAC
[ENA]
¢þ
>WENV182501231
OIUB01001262
[OIUB] human gut metagenome; human gut
905
830
-
Asn
GTT
[ENA]
¢þ
>WENV182501229
OIUB01001221
[OIUB] human gut metagenome; human gut
915
839
-
Val
GAC
[ENA]
¢þ
>WENV182501243
OIUB01002628
[OIUB] human gut metagenome; human gut
988
901
-
Ser
TGA
[ENA]
¢þ
>WENV182501247
OIUB01002809
[OIUB] human gut metagenome; human gut
1012
938
-
Gln
CTG
[ENA]
¢þ
>WENV182501200
OIUB01000137
[OIUB] human gut metagenome; human gut
1036
963
-
Lys
CTT
[ENA]
¢þ
>WENV182501234
OIUB01001466
[OIUB] human gut metagenome; human gut
1060
1135
+
Ala
GGC
[ENA]
¢þ
>WENV182501225
OIUB01000941
[OIUB] human gut metagenome; human gut
1182
1257
+
Thr
CGT
[ENA]
¢þ
>WENV182501218
OIUB01000804
[OIUB] human gut metagenome; human gut
1199
1123
-
fMet
CAT
[ENA]
¢þ
>WENV182501228
OIUB01001172
[OIUB] human gut metagenome; human gut
1217
1304
+
Ser
GGA
[ENA]
¢þ
>WENV182501213
OIUB01000603
[OIUB] human gut metagenome; human gut
1262
1334
+
Cys
GCA
[ENA]
¢þ
>WENV182501217
OIUB01000781
[OIUB] human gut metagenome; human gut
1512
1437
-
Pro
TGG
[ENA]
¢þ
>WENV182501232
OIUB01001327
[OIUB] human gut metagenome; human gut
1535
1460
-
Pro
GGG
[ENA]
¢þ
>WENV182501221
OIUB01000893
[OIUB] human gut metagenome; human gut
1545
1621
+
Arg
CCG
[ENA]
¢þ
>WENV182501216
OIUB01000781
[OIUB] human gut metagenome; human gut
1623
1548
-
Pro
TGG
[ENA]
¢þ
>WENV182501222
OIUB01000893
[OIUB] human gut metagenome; human gut
1680
1755
+
His
GTG
[ENA]
¢þ
>WENV182501215
OIUB01000709
[OIUB] human gut metagenome; human gut
1685
1770
+
Ser
TGA
[ENA]
¢þ
>WENV182501233
OIUB01001356
[OIUB] human gut metagenome; human gut
1744
1671
-
Gly
CCC
[ENA]
¢þ
>WENV182501223
OIUB01000893
[OIUB] human gut metagenome; human gut
1776
1862
+
Leu
CAG
[ENA]
¢þ
>WENV182501224
OIUB01000893
[OIUB] human gut metagenome; human gut
1905
1981
+
Pro
TGG
[ENA]
¢þ
>WENV182501212
OIUB01000554
[OIUB] human gut metagenome; human gut
1985
1911
-
His
GTG
[ENA]
¢þ
>WENV182501201
OIUB01000228
[OIUB] human gut metagenome; human gut
2164
2238
+
Ala
GGC
[ENA]
¢þ
>WENV182501191
OIUB01000079
[OIUB] human gut metagenome; human gut
2198
2274
+
Ile
GAT
[ENA]
¢þ
>WENV182501192
OIUB01000079
[OIUB] human gut metagenome; human gut
2303
2377
+
Ala
TGC
[ENA]
¢þ
>WENV182501208
OIUB01000289
[OIUB] human gut metagenome; human gut
2362
2288
-
Thr
TGT
[ENA]
¢þ
>WENV182501202
OIUB01000231
[OIUB] human gut metagenome; human gut
2787
2860
+
Gly
GCC
[ENA]
¢þ
>WENV182501203
OIUB01000231
[OIUB] human gut metagenome; human gut
2874
2958
+
Leu
TAA
[ENA]
¢þ
>WENV182501188
OIUB01000025
[OIUB] human gut metagenome; human gut
2981
2909
-
Arg
CCT
[ENA]
¢þ
>WENV182501207
OIUB01000251
[OIUB] human gut metagenome; human gut
3030
2955
-
Thr
GGT
[ENA]
¢þ
>WENV182501206
OIUB01000251
[OIUB] human gut metagenome; human gut
3111
3037
-
Gly
TCC
[ENA]
¢þ
>WENV182501205
OIUB01000251
[OIUB] human gut metagenome; human gut
3312
3228
-
Tyr
GTA
[ENA]
¢þ
>WENV182501193
OIUB01000100
[OIUB] human gut metagenome; human gut
3392
3317
-
Glu
TTC
[ENA]
¢þ
>WENV182501204
OIUB01000251
[OIUB] human gut metagenome; human gut
3396
3321
-
Thr
TGT
[ENA]
¢þ
>WENV182501198
OIUB01000128
[OIUB] human gut metagenome; human gut
3591
3664
+
Trp
CCA
[ENA]
¢þ
>WENV182501190
OIUB01000051
[OIUB] human gut metagenome; human gut
4349
4424
+
Val
TAC
[ENA]
¢þ
>WENV182501197
OIUB01000126
[OIUB] human gut metagenome; human gut
4624
4549
-
Trp
CCA
[ENA]
¢þ
>WENV182501196
OIUB01000126
[OIUB] human gut metagenome; human gut
4709
4633
-
Asp
GTC
[ENA]
¢þ
>WENV182501187
OIUB01000011
[OIUB] human gut metagenome; human gut
8847
8919
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK