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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIUF] human gut metagenome; human gut
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182501880
OIUF01004947
[OIUF] human gut metagenome; human gut
56
130
+
Met
CAT
[ENA]
¢þ
>WENV182501878
OIUF01004833
[OIUF] human gut metagenome; human gut
82
7
-
Gly
TCC
[ENA]
¢þ
>WENV182501882
OIUF01005081
[OIUF] human gut metagenome; human gut
106
192
+
Leu
GAG
[ENA]
¢þ
>WENV182501860
OIUF01003540
[OIUF] human gut metagenome; human gut
117
203
+
Leu
TAA
[ENA]
¢þ
>WENV182501887
OIUF01006321
[OIUF] human gut metagenome; human gut
126
212
+
Leu
TAA
[ENA]
¢þ
>WENV182501837
OIUF01000920
[OIUF] human gut metagenome; human gut
130
55
-
Thr
TGT
[ENA]
¢þ
>WENV182501848
OIUF01001718
[OIUF] human gut metagenome; human gut
134
59
-
Val
TAC
[ENA]
¢þ
>WENV182501864
OIUF01003661
[OIUF] human gut metagenome; human gut
152
76
-
Pro
TGG
[ENA]
¢þ
>WENV182501877
OIUF01004833
[OIUF] human gut metagenome; human gut
163
88
-
Val
TAC
[ENA]
¢þ
>WENV182501871
OIUF01004271
[OIUF] human gut metagenome; human gut
194
271
+
fMet
CAT
[ENA]
¢þ
>WENV182501886
OIUF01005627
[OIUF] human gut metagenome; human gut
199
125
-
His
GTG
[ENA]
¢þ
>WENV182501881
OIUF01004947
[OIUF] human gut metagenome; human gut
211
285
+
Arg
CCT
[ENA]
¢þ
>WENV182501879
OIUF01004852
[OIUF] human gut metagenome; human gut
215
301
+
Leu
AAG
[ENA]
¢þ
>WENV182501836
OIUF01000920
[OIUF] human gut metagenome; human gut
225
136
-
Ser
TGA
[ENA]
¢þ
>WENV182501872
OIUF01004703
[OIUF] human gut metagenome; human gut
232
319
+
Ser
CGA
[ENA]
¢þ
>WENV182501863
OIUF01003661
[OIUF] human gut metagenome; human gut
236
161
-
Thr
TGT
[ENA]
¢þ
>WENV182501876
OIUF01004833
[OIUF] human gut metagenome; human gut
247
171
-
Arg
ACG
[ENA]
¢þ
>WENV182501855
OIUF01002813
[OIUF] human gut metagenome; human gut
249
174
-
Ile2
CAT
[ENA]
¢þ
>WENV182501885
OIUF01005627
[OIUF] human gut metagenome; human gut
282
206
-
Asp
GTC
[ENA]
¢þ
>WENV182501859
OIUF01003391
[OIUF] human gut metagenome; human gut
290
217
-
Lys
TTT
[ENA]
¢þ
>WENV182501875
OIUF01004833
[OIUF] human gut metagenome; human gut
323
248
-
Ala
TGC
[ENA]
¢þ
>WENV182501865
OIUF01003760
[OIUF] human gut metagenome; human gut
323
398
+
Gly
TCC
[ENA]
¢þ
>WENV182501884
OIUF01005627
[OIUF] human gut metagenome; human gut
366
291
-
Phe
GAA
[ENA]
¢þ
>WENV182501853
OIUF01002440
[OIUF] human gut metagenome; human gut
372
287
-
Ser
TGA
[ENA]
¢þ
>WENV182501839
OIUF01000995
[OIUF] human gut metagenome; human gut
417
345
-
Glu
TTC
[ENA]
¢þ
>WENV182501888
OIUF01006321
[OIUF] human gut metagenome; human gut
442
517
+
Ile2
CAT
[ENA]
¢þ
>WENV182501845
OIUF01001375
[OIUF] human gut metagenome; human gut
444
518
+
Ile2
CAT
[ENA]
¢þ
>WENV182501883
OIUF01005627
[OIUF] human gut metagenome; human gut
446
372
-
Gln
TTG
[ENA]
¢þ
>WENV182501857
OIUF01002943
[OIUF] human gut metagenome; human gut
465
549
+
Leu
TAG
[ENA]
¢þ
>WENV182501874
OIUF01004833
[OIUF] human gut metagenome; human gut
513
437
-
Met
CAT
[ENA]
¢þ
>WENV182501866
OIUF01003760
[OIUF] human gut metagenome; human gut
517
592
+
Gly
TCC
[ENA]
¢þ
>WENV182501828
OIUF01000464
[OIUF] human gut metagenome; human gut
533
606
+
Thr
CGT
[ENA]
¢þ
>WENV182501847
OIUF01001433
[OIUF] human gut metagenome; human gut
544
619
+
Ala
GGC
[ENA]
¢þ
>WENV182501873
OIUF01004833
[OIUF] human gut metagenome; human gut
598
523
-
Val
TAC
[ENA]
¢þ
>WENV182501841
OIUF01001194
[OIUF] human gut metagenome; human gut
607
694
+
Ser
GCT
[ENA]
¢þ
>WENV182501867
OIUF01003836
[OIUF] human gut metagenome; human gut
622
700
+
Ala
TGC
[ENA]
¢þ
>WENV182501868
OIUF01003836
[OIUF] human gut metagenome; human gut
706
781
+
Ile
GAT
[ENA]
¢þ
>WENV182501858
OIUF01003271
[OIUF] human gut metagenome; human gut
712
628
-
Leu
CAA
[ENA]
¢þ
>WENV182501861
OIUF01003639
[OIUF] human gut metagenome; human gut
768
842
+
Met
CAT
[ENA]
¢þ
>WENV182501842
OIUF01001194
[OIUF] human gut metagenome; human gut
772
844
+
Glu
CTC
[ENA]
¢þ
>WENV182501870
OIUF01003874
[OIUF] human gut metagenome; human gut
775
691
-
Tyr
GTA
[ENA]
¢þ
>WENV182501852
OIUF01002345
[OIUF] human gut metagenome; human gut
781
857
+
Pro
CGG
[ENA]
¢þ
>WENV182501869
OIUF01003836
[OIUF] human gut metagenome; human gut
786
861
+
Ala
TGC
[ENA]
¢þ
>WENV182501862
OIUF01003661
[OIUF] human gut metagenome; human gut
802
727
-
Arg
TCT
[ENA]
¢þ
>WENV182501802
OIUF01000054
[OIUF] human gut metagenome; human gut
802
730
-
Arg
CCT
[ENA]
¢þ
>WENV182501816
OIUF01000172
[OIUF] human gut metagenome; human gut
826
751
-
Trp
CCA
[ENA]
¢þ
>WENV182501846
OIUF01001418
[OIUF] human gut metagenome; human gut
901
827
-
Asp
GTC
[ENA]
¢þ
>WENV182501854
OIUF01002619
[OIUF] human gut metagenome; human gut
902
975
+
fMet
CAT
[ENA]
¢þ
>WENV182501815
OIUF01000172
[OIUF] human gut metagenome; human gut
911
835
-
Asp
GTC
[ENA]
¢þ
>WENV182501843
OIUF01001198
[OIUF] human gut metagenome; human gut
944
1018
+
Ala
GGC
[ENA]
¢þ
>WENV182501849
OIUF01001735
[OIUF] human gut metagenome; human gut
964
891
-
Gly
CCC
[ENA]
¢þ
>WENV182501856
OIUF01002888
[OIUF] human gut metagenome; human gut
973
1047
+
Asn
GTT
[ENA]
¢þ
>WENV182501826
OIUF01000388
[OIUF] human gut metagenome; human gut
1029
955
-
Arg
TCT
[ENA]
¢þ
>WENV182501832
OIUF01000683
[OIUF] human gut metagenome; human gut
1043
970
-
Trp
CCA
[ENA]
¢þ
>WENV182501835
OIUF01000873
[OIUF] human gut metagenome; human gut
1057
1129
+
Cys
GCA
[ENA]
¢þ
>WENV182501844
OIUF01001255
[OIUF] human gut metagenome; human gut
1059
985
-
Arg
CCT
[ENA]
¢þ
>WENV182501838
OIUF01000938
[OIUF] human gut metagenome; human gut
1064
988
-
Pro
GGG
[ENA]
¢þ
>WENV182501824
OIUF01000330
[OIUF] human gut metagenome; human gut
1149
1073
-
Arg
TCT
[ENA]
¢þ
>WENV182501827
OIUF01000437
[OIUF] human gut metagenome; human gut
1161
1086
-
Phe
GAA
[ENA]
¢þ
>WENV182501823
OIUF01000330
[OIUF] human gut metagenome; human gut
1239
1163
-
Arg
TCG
[ENA]
¢þ
>WENV182501834
OIUF01000793
[OIUF] human gut metagenome; human gut
1260
1185
-
Asn
GTT
[ENA]
¢þ
>WENV182501812
OIUF01000146
[OIUF] human gut metagenome; human gut
1308
1381
+
Gly
GCC
[ENA]
¢þ
>WENV182501822
OIUF01000330
[OIUF] human gut metagenome; human gut
1322
1247
-
Ile2
CAT
[ENA]
¢þ
>WENV182501813
OIUF01000146
[OIUF] human gut metagenome; human gut
1395
1479
+
Leu
TAA
[ENA]
¢þ
>WENV182501851
OIUF01001740
[OIUF] human gut metagenome; human gut
1447
1371
-
Asn
GTT
[ENA]
¢þ
>WENV182501850
OIUF01001740
[OIUF] human gut metagenome; human gut
1545
1454
-
Ser
GCT
[ENA]
¢þ
>WENV182501829
OIUF01000526
[OIUF] human gut metagenome; human gut
1607
1532
-
Pro
GGG
[ENA]
¢þ
>WENV182501808
OIUF01000125
[OIUF] human gut metagenome; human gut
1625
1550
-
Val
TAC
[ENA]
¢þ
>WENV182501803
OIUF01000097
[OIUF] human gut metagenome; human gut
1766
1842
+
Arg
CCG
[ENA]
¢þ
>WENV182501817
OIUF01000184
[OIUF] human gut metagenome; human gut
1779
1708
-
Gln
CTG
[ENA]
¢þ
>WENV182501820
OIUF01000271
[OIUF] human gut metagenome; human gut
1827
1900
+
Phe
GAA
[ENA]
¢þ
>WENV182501807
OIUF01000112
[OIUF] human gut metagenome; human gut
1849
1922
+
Trp
CCA
[ENA]
¢þ
>WENV182501804
OIUF01000097
[OIUF] human gut metagenome; human gut
1901
1976
+
His
GTG
[ENA]
¢þ
>WENV182501805
OIUF01000097
[OIUF] human gut metagenome; human gut
1997
2083
+
Leu
CAG
[ENA]
¢þ
>WENV182501840
OIUF01001085
[OIUF] human gut metagenome; human gut
2062
1989
-
Gly
CCC
[ENA]
¢þ
>WENV182501806
OIUF01000097
[OIUF] human gut metagenome; human gut
2126
2202
+
Pro
TGG
[ENA]
¢þ
>WENV182501833
OIUF01000793
[OIUF] human gut metagenome; human gut
2252
2341
+
Ser
CGA
[ENA]
¢þ
>WENV182501831
OIUF01000675
[OIUF] human gut metagenome; human gut
2378
2462
+
Leu
CAA
[ENA]
¢þ
>WENV182501810
OIUF01000126
[OIUF] human gut metagenome; human gut
2716
2633
-
Tyr
GTA
[ENA]
¢þ
>WENV182501818
OIUF01000214
[OIUF] human gut metagenome; human gut
2770
2846
+
Ile
GAT
[ENA]
¢þ
>WENV182501830
OIUF01000569
[OIUF] human gut metagenome; human gut
2808
2882
+
Thr
TGT
[ENA]
¢þ
>WENV182501801
OIUF01000045
[OIUF] human gut metagenome; human gut
2855
2926
+
Gln
TTG
[ENA]
¢þ
>WENV182501809
OIUF01000126
[OIUF] human gut metagenome; human gut
2864
2790
-
Thr
TGT
[ENA]
¢þ
>WENV182501819
OIUF01000214
[OIUF] human gut metagenome; human gut
2875
2949
+
Ala
TGC
[ENA]
¢þ
>WENV182501821
OIUF01000306
[OIUF] human gut metagenome; human gut
2995
2901
-
SeC
TCA
[ENA]
¢þ
>WENV182501825
OIUF01000345
[OIUF] human gut metagenome; human gut
3491
3573
+
Leu
TAG
[ENA]
¢þ
>WENV182501811
OIUF01000139
[OIUF] human gut metagenome; human gut
4258
4346
+
Ser
GGA
[ENA]
¢þ
>WENV182501814
OIUF01000172
[OIUF] human gut metagenome; human gut
4348
4273
-
Glu
TTC
[ENA]
¢þ
>WENV182501800
OIUF01000037
[OIUF] human gut metagenome; human gut
5464
5390
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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